Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007793

Physical Location & Seq

Genomic Coordinates Forward (+)

343993 .. 345880

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGACAGCAGTGGTGAAAAGAAGGAGCTTGAATGGATAGAGAGAGTGAGATCAGAAGGAGCTGTTCCACTTCTTGATCCGGACAATTGCCGAAATGGTTGGGCTTCTCCACCTGGATACAAGTTCTTGGTTAGAGGTCCAGACTACTTGTCAACCAGGGTTAAAGTTCCTGCTGGTGAATATCTTCTAAAGTCTCTTGGTTTCGATTGGATTAGAAGTTCGACAAAGATTGGGGAGGTCTTAAAACATCCAAGTGGTCGTGTTAAGAAGGCTATTGAGGAAGAGTTTCCGACAGGTGATAAGCCTTTCGTTTGGGCTTTCAATCTTCAAGTTCCGAGTAAGGATAATTATAGTGCTGTGGCGTATTTTACTACCAGAGAGCCTATTCTGGAGGGGTCTTTGATGGACCAGTTCTTGAAAGGTGATGATGGGTTTAGGAATTCAAGGCTTAAATTGATTGCCAACATTGTCAAGGGCCCTTGGATTGTGAGGAAAGCAGTTGGGGAGCAGGCCATATGCATAATTGGGCGTGCCCTTTCTTGTAATTATTGTGCATCAGATAGTTTCTTAGAAGTAGACGTGGATATTGGGTCTTCCATGGTTGCAAGTGCAATAGTTCATCTTGCATTTGGTTATATCACAACTCTGACCGTTGACCTTGCATTTCTCATCGAGAGCCAAACTGAATCAGAGCTTCCAGAACAACTTTTAGGTGCTGTAAGATTCTCTGAACTAGACCCTGCGGTGGCAAGGCCAACTGAACCATATCTTGGTAGGAGTACTGGCAGTTTGCAGTCTAATCTGCCTACACGATTATGGAAGTCAATTGGGCAGGGATTTTCCCACATGCTTCATCCAGGTGACCATGAAAATGGCTCTAGCTTGGGCTCACCATGTGTTAATGGGATTGGAGACAATGAAAGCAGTTCCATAGAGATTAAGAAATGCAATATAGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

321

Amino Acids

35.14

Weight (kDa)

5.67

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06050
fragaria_vesca	FvH4_4g10940 FvH4_4g10940 FvH4_4g10940 FvH4_4g10940 FvH4_4g10940
malus_domestica	MD05G1003100.v1.1 MD10G1004000.v1.1
prunus_persica	Prupe.2G102100_v2.0.a1 Prupe.2G102100_v2.0.a1 Prupe.2G102100_v2.0.a1
pyrus_communis	pycom05g00280 pycom10g00320
rosa_chinensis	RchiOBHm_Chr4g0406431
rosa_laevigata	RLG00000008772
rosa_multiflora	Rmu_ssc0000186.1_g000010
rosa_roxburghii	Rroxscaffold_5G00351270
rosa_rugosa	Rorug04G0071100 Rorug04G0071200
rosa_samantha	Rh4AG138200 Rh4BG135400 Rh4CG145800 Rh4DG132800
rosa_wichuraiana	Rw4G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	770
AccI	GTMKAC	1 cut(s)	576
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	1 cut(s)	743
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	439
AdeI	CACNNNGTG	1 cut(s)	896
AfaI	GTAC	1 cut(s)	781
AfiI	CCNNNNNNNGG	2 cut(s)	745, 770
AgsI	TTSAA	5 cut(s)	32, 322, 329, 418, 444
AhdI	GACNNNNNGTC	1 cut(s)	148
AjiI	CACGTC	1 cut(s)	580
AjnI	CCWGG	3 cut(s)	112, 155, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	753, 785
AloI	GAACNNNNNNTCC	2 cut(s)	202, 234
AluBI	AGCT	4 cut(s)	28, 62, 694, 882
AluI	AGCT	4 cut(s)	28, 62, 694, 882
Alw26I	GTCTC	2 cut(s)	198, 906
AlwI	GGATC	1 cut(s)	71
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	3 cut(s)	475, 510, 752
ApaI	GGGCCC	1 cut(s)	479
ApoI	RAATTY	1 cut(s)	439
Asp700I	GAANNNNTTC	2 cut(s)	183, 285
AspS9I	GGNCC	4 cut(s)	137, 406, 475, 476
AsuHPI	GGTGA	6 cut(s)	26, 188, 308, 434, 872, 882
AvaII	GGWCC	2 cut(s)	137, 406
BaeGI	GKGCMC	2 cut(s)	479, 535
BanII	GRGCYC	2 cut(s)	479, 890
BbsI	GAAGAC	1 cut(s)	585
BccI	CCATC	2 cut(s)	397, 422
BciT130I	CCWGG	3 cut(s)	114, 157, 858
BciVI	GTATCC	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	198, 906
BfaI	CTAG	2 cut(s)	734, 879
BfuI	GTATCC	1 cut(s)	110
BmcAI	AGTACT	1 cut(s)	781
Bme1390I	CCNGG	3 cut(s)	114, 157, 858
Bme18I	GGWCC	2 cut(s)	137, 406
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	580
BmgT120I	GGNCC	4 cut(s)	137, 406, 475, 476
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	3 cut(s)	114, 157, 858
BmsI	GCATC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	410
BsaJI	CCNNGG	3 cut(s)	156, 479, 597
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	745, 770
Bse1I	ACTGG	2 cut(s)	409, 787
BseAI	TCCGGA	1 cut(s)	79
BseBI	CCWGG	3 cut(s)	114, 157, 858
BseDI	CCNNGG	3 cut(s)	156, 479, 597
BseGI	GGATG	2 cut(s)	247, 853
BseLI	CCNNNNNNNGG	2 cut(s)	745, 770
BseNI	ACTGG	2 cut(s)	409, 787
BseSI	GKGCMC	2 cut(s)	479, 535
BshFI	GGCC	3 cut(s)	477, 512, 754
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	745, 770
BsmAI	GTCTC	2 cut(s)	198, 906
BsnI	GGCC	3 cut(s)	477, 512, 754
Bsp120I	GGGCCC	1 cut(s)	475
Bsp1286I	GDGCHC	3 cut(s)	479, 535, 890
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	50, 76
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	1 cut(s)	743
BspANI	GGCC	3 cut(s)	477, 512, 754
BspEI	TCCGGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	409, 787
BssECI	CCNNGG	3 cut(s)	156, 479, 597
BssMI	GATC	2 cut(s)	50, 76
BssT1I	CCWWGG	2 cut(s)	479, 597
Bst2UI	CCWGG	3 cut(s)	114, 157, 858
Bst4CI	ACNGT	1 cut(s)	652
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	510, 531
BstDEI	CTNAG	1 cut(s)	568
BstDSI	CCRYGG	1 cut(s)	597
BstEII	GGTNACC	1 cut(s)	860
BstF5I	GGATG	2 cut(s)	247, 853
BstKTI	GATC	2 cut(s)	53, 79
BstMAI	GTCTC	2 cut(s)	198, 906
BstMBI	GATC	2 cut(s)	50, 76
BstNI	CCWGG	3 cut(s)	114, 157, 858
BstNSI	RCATGY	1 cut(s)	850
BstPI	GGTNACC	1 cut(s)	860
BstSCI	CCNGG	3 cut(s)	112, 155, 856
BstSLI	GKGCMC	2 cut(s)	479, 535
BstV2I	GAAGAC	1 cut(s)	585
BstXI	CCANNNNNNTGG	1 cut(s)	872
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	3 cut(s)	477, 512, 754
BtgI	CCRYGG	1 cut(s)	597
BtrI	CACGTC	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	247, 853
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	510, 531
Cfr13I	GGNCC	4 cut(s)	137, 406, 475, 476
Csp6I	GTAC	1 cut(s)	780
CviAII	CATG	4 cut(s)	598, 847, 866, 894
CviQI	GTAC	1 cut(s)	780
DdeI	CTNAG	1 cut(s)	568
DpnI	GATC	2 cut(s)	52, 78
DpnII	GATC	2 cut(s)	50, 76
DraIII	CACNNNGTG	1 cut(s)	896
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	276
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	479, 597
Eco24I	GRGCYC	2 cut(s)	479, 890
Eco47I	GGWCC	2 cut(s)	137, 406
Eco91I	GGTNACC	1 cut(s)	860
EcoO109I	RGGNCCY	2 cut(s)	475, 476
EcoO65I	GGTNACC	1 cut(s)	860
EcoRI	GAATTC	1 cut(s)	439
EcoRII	CCWGG	3 cut(s)	112, 155, 856
EcoT14I	CCWWGG	2 cut(s)	479, 597
EcoT22I	ATGCAT	1 cut(s)	521
EcoT38I	GRGCYC	2 cut(s)	479, 890
ErhI	CCWWGG	2 cut(s)	479, 597
FaeI	CATG	4 cut(s)	601, 850, 869, 897
FatI	CATG	4 cut(s)	597, 846, 865, 893
FauNDI	CATATG	1 cut(s)	515
FblI	GTMKAC	1 cut(s)	576
FokI	GGATG	2 cut(s)	234, 840
FriOI	GRGCYC	2 cut(s)	479, 890
FspBI	CTAG	2 cut(s)	734, 879
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	3 cut(s)	477, 512, 754
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	4 cut(s)	601, 850, 869, 897
HincII	GTYRAC	2 cut(s)	153, 655
HindII	GTYRAC	2 cut(s)	153, 655
HinfI	GANTC	2 cut(s)	686, 723
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	6 cut(s)	26, 188, 308, 434, 872, 882
Hpy166II	GTNNAC	3 cut(s)	153, 577, 655
Hpy188I	TCNGA	7 cut(s)	55, 291, 336, 559, 648, 691, 730
Hpy188III	TCNNGA	7 cut(s)	74, 80, 140, 389, 415, 673, 698
Hpy8I	GTNNAC	3 cut(s)	153, 577, 655
HpyAV	CCTTC	3 cut(s)	16, 50, 262
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	8 cut(s)	519, 554, 605, 611, 626, 662, 793, 948
HpyF3I	CTNAG	1 cut(s)	568
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	4 cut(s)	601, 850, 869, 897
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	50, 76
LmnI	GCTCC	3 cut(s)	25, 59, 505
LweI	GCATC	1 cut(s)	563
MaeI	CTAG	2 cut(s)	734, 879
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	1 cut(s)	860
MalI	GATC	2 cut(s)	52, 78
MboI	GATC	2 cut(s)	50, 76
MboII	GAAGA	4 cut(s)	176, 293, 317, 585
MfeI	CAATTG	2 cut(s)	85, 825
MhlI	GDGCHC	3 cut(s)	479, 535, 890
MluCI	AATT	7 cut(s)	85, 346, 439, 452, 522, 544, 825
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	5 cut(s)	128, 229, 271, 385, 483
Mph1103I	ATGCAT	1 cut(s)	521
MroI	TCCGGA	1 cut(s)	79
MroXI	GAANNNNTTC	2 cut(s)	183, 285
MseI	TTAA	6 cut(s)	162, 242, 264, 450, 900, 939
MslI	CAYNNNNRTG	4 cut(s)	252, 814, 858, 870
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	3 cut(s)	114, 157, 858
MunI	CAATTG	2 cut(s)	85, 825
MvaI	CCWGG	3 cut(s)	114, 157, 858
NcoI	CCATGG	1 cut(s)	597
NdeI	CATATG	1 cut(s)	515
NdeII	GATC	2 cut(s)	50, 76
NlaIII	CATG	4 cut(s)	601, 850, 869, 897
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	1 cut(s)	860
NsiI	ATGCAT	1 cut(s)	521
NspI	RCATGY	1 cut(s)	850
PdmI	GAANNNNTTC	2 cut(s)	183, 285
PfeI	GAWTC	2 cut(s)	686, 723
PflMI	CCANNNNNTGG	1 cut(s)	770
Psp6I	CCWGG	3 cut(s)	112, 155, 856
PspEI	GGTNACC	1 cut(s)	860
PspGI	CCWGG	3 cut(s)	112, 155, 856
PspN4I	GGNNCC	1 cut(s)	477
PspOMI	GGGCCC	1 cut(s)	475
PspPI	GGNCC	4 cut(s)	137, 406, 475, 476
RsaI	GTAC	1 cut(s)	781
RsaNI	GTAC	1 cut(s)	780
RseI	CAYNNNNRTG	4 cut(s)	252, 814, 858, 870
SaqAI	TTAA	6 cut(s)	162, 242, 264, 450, 900, 939
Sau3AI	GATC	2 cut(s)	50, 76
Sau96I	GGNCC	4 cut(s)	137, 406, 475, 476
ScaI	AGTACT	1 cut(s)	781
ScrFI	CCNGG	3 cut(s)	114, 157, 858
SduI	GDGCHC	3 cut(s)	479, 535, 890
SfaNI	GCATC	1 cut(s)	563
SinI	GGWCC	2 cut(s)	137, 406
SmiMI	CAYNNNNRTG	4 cut(s)	252, 814, 858, 870
Sse9I	AATT	7 cut(s)	85, 346, 439, 452, 522, 544, 825
SsiI	CCGC	1 cut(s)	743
SspMI	CTAG	2 cut(s)	734, 879
StyD4I	CCNGG	3 cut(s)	112, 155, 856
StyI	CCWWGG	2 cut(s)	479, 597
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	3 cut(s)	204, 221, 672
TasI	AATT	7 cut(s)	85, 346, 439, 452, 522, 544, 825
TatI	WGTACW	1 cut(s)	779
TfiI	GAWTC	2 cut(s)	686, 723
Tru1I	TTAA	6 cut(s)	162, 242, 264, 450, 900, 939
Tru9I	TTAA	6 cut(s)	162, 242, 264, 450, 900, 939
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	860
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	4 cut(s)	608, 842, 882, 933
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	770
VpaK11BI	GGWCC	2 cut(s)	137, 406
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	850
XmiI	GTMKAC	1 cut(s)	576
XmnI	GAANNNNTTC	2 cut(s)	183, 285
XspI	CTAG	2 cut(s)	734, 879
ZrmI	AGTACT	1 cut(s)	781
Zsp2I	ATGCAT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.