RLG00000008772

Protein of unknown function (DUF1336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007793
Physical Location & Seq
Reverse (-)
36876200 .. 36878418
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008772

Sequence Viewer

Length: 828 bp
ATGGTCAGAGGCCCGGATTACTTGTCGACCAAGGTTAAAATTCCTGCTGGTGCATGTCTTCTAAAGCCTCTTGGTTTCGATTGGATTAAAAGCTCTACAAAGATTACAGAGATCTTAAAACATCCTAACAGTCGTGTCAGGAAGGCTATTGAGGATGAGTATTGGTCAGTTAATAAGCCTTTTGTTTGGGCTTTCAATCTTCAAGTTCCTAGCAAGGATAACTATAGTGCAGTGGCATATTTTACAACCACAGAGCCTATCCCTGAGGGGTCTTTGATGGATCAGTTTCTGAAAGGTGATGATGGCTTTAGGAATTCGAGGCTTAAGTTGATTGCCAACATTGTCAAGGGCCCTTGGATTGTAAGAAAAGCAGTTGGGGAGCAGGCCATATGCATAATTGGTCGTGCCCTTTCTTGTAGCTATAGTGTATCAGACACTTTCCTAGAAGTAGATGTAGATATTGGATCTTCCATGGTTGCAAGTGCAATAGTTCATCTTGCATTTGGTTATATCACAACATTGACCGTAGACCTTGCCTTTCTGATCGAGGCTCAAACTGAGTCAGAGCTTCCAGAACAGCTCTTAGGTGCTGTAAGATTCTCTGACCTGGACCCTGCTGTGGCTCGGCCCGCTGAGCCATCATCTGATAGGAGTCTTGGCACTTTGCAGTCTTCTCTGCCTACACGACTATGGAAATCACTTGGGCAGGGTTTCTCCCATATTCTTCATCCAGGTCCCCAAGAAAATGGCTCTAGCTCAGGCTCACCGCATGCTAATGGAACTGGGGATAATAAAGAAGGCAGTTTTGAAGAGATTAACAAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

276

Amino Acids

29.93

Weight (kDa)

5.78

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 1 - 204 3.8e-74 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 26, 528
AciI CCGC 2 cut(s) 630, 767
AclWI GGATC 2 cut(s) 288, 472
AcsI RAATTY 2 cut(s) 39, 313
AfiI CCNNNNNNNGG 1 cut(s) 619
AflII CTTAAG 1 cut(s) 323
AgsI TTSAA 3 cut(s) 196, 203, 809
AjnI CCWGG 2 cut(s) 606, 730
AluBI AGCT 5 cut(s) 93, 420, 568, 580, 756
AluI AGCT 5 cut(s) 93, 420, 568, 580, 756
AlwI GGATC 2 cut(s) 288, 472
AlwNI CAGNNNCTG 1 cut(s) 289
AoxI GGCC 4 cut(s) 10, 349, 384, 626
ApaI GGGCCC 1 cut(s) 353
ApoI RAATTY 2 cut(s) 39, 313
AspS9I GGNCC 6 cut(s) 11, 349, 350, 610, 627, 734
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 308, 756
AvaII GGWCC 2 cut(s) 610, 734
AxyI CCTNAGG 1 cut(s) 264
BaeGI GKGCMC 2 cut(s) 353, 409
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 2 cut(s) 50, 663
BccI CCATC 3 cut(s) 271, 296, 646
BciT130I CCWGG 2 cut(s) 608, 732
BcnI CCSGG 1 cut(s) 14
BfaI CTAG 3 cut(s) 210, 443, 753
BfmI CTRYAG 2 cut(s) 223, 421
BfrI CTTAAG 1 cut(s) 323
BglII AGATCT 1 cut(s) 111
BlpI GCTNAGC 1 cut(s) 633
Bme1390I CCNGG 3 cut(s) 14, 608, 732
Bme18I GGWCC 2 cut(s) 610, 734
BmgT120I GGNCC 6 cut(s) 11, 349, 350, 610, 627, 734
BmiI GGNNCC 3 cut(s) 351, 612, 736
BmrFI CCNGG 3 cut(s) 14, 608, 732
BmrI ACTGGG 1 cut(s) 792
BmuI ACTGGG 1 cut(s) 792
BpiI GAAGAC 2 cut(s) 50, 663
Bpu10I CCTNAGC 1 cut(s) 757
Bpu1102I GCTNAGC 1 cut(s) 633
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 30, 353, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 619
Bse1I ACTGG 1 cut(s) 787
Bse21I CCTNAGG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 608, 732
BseDI CCNNGG 3 cut(s) 30, 353, 471
BseGI GGATG 3 cut(s) 121, 160, 727
BseLI CCNNNNNNNGG 1 cut(s) 619
BseMII CTCAG 4 cut(s) 255, 549, 624, 771
BseNI ACTGG 1 cut(s) 787
BseSI GKGCMC 2 cut(s) 353, 409
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 4 cut(s) 12, 351, 386, 628
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 720
BslI CCNNNNNNNGG 1 cut(s) 619
BsmFI GGGAC 1 cut(s) 720
BsnI GGCC 4 cut(s) 12, 351, 386, 628
Bsp120I GGGCCC 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 353, 409
Bsp143I GATC 4 cut(s) 111, 280, 464, 543
Bsp1720I GCTNAGC 1 cut(s) 633
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 2 cut(s) 630, 767
BspANI GGCC 4 cut(s) 12, 351, 386, 628
BspCNI CTCAG 4 cut(s) 256, 550, 625, 770
BspLI GGNNCC 3 cut(s) 351, 612, 736
BspPI GGATC 2 cut(s) 288, 472
BspTI CTTAAG 1 cut(s) 323
BsrI ACTGG 1 cut(s) 787
BssECI CCNNGG 3 cut(s) 30, 353, 471
BssMI GATC 4 cut(s) 111, 280, 464, 543
BssT1I CCWWGG 3 cut(s) 30, 353, 471
Bst2UI CCWGG 2 cut(s) 608, 732
Bst4CI ACNGT 2 cut(s) 131, 526
Bst6I CTCTTC 1 cut(s) 804
BstAFI CTTAAG 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 384, 630, 771
BstDEI CTNAG 5 cut(s) 264, 558, 583, 633, 757
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 3 cut(s) 121, 160, 727
BstKTI GATC 4 cut(s) 114, 283, 467, 546
BstMBI GATC 4 cut(s) 111, 280, 464, 543
BstMWI GCNNNNNNNGC 2 cut(s) 629, 634
BstNI CCWGG 2 cut(s) 608, 732
BstNSI RCATGY 2 cut(s) 57, 773
BstSCI CCNGG 3 cut(s) 12, 606, 730
BstSFI CTRYAG 2 cut(s) 223, 421
BstSLI GKGCMC 2 cut(s) 353, 409
BstV2I GAAGAC 2 cut(s) 50, 663
BstX2I RGATCY 2 cut(s) 111, 464
BstXI CCANNNNNNTGG 1 cut(s) 746
BstYI RGATCY 2 cut(s) 111, 464
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 4 cut(s) 12, 351, 386, 628
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 3 cut(s) 121, 160, 727
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 3 cut(s) 384, 630, 771
CaiI CAGNNNCTG 1 cut(s) 289
Cfr13I GGNCC 6 cut(s) 11, 349, 350, 610, 627, 734
CviAII CATG 3 cut(s) 54, 472, 770
DdeI CTNAG 5 cut(s) 264, 558, 583, 633, 757
DpnI GATC 4 cut(s) 113, 282, 466, 545
DpnII GATC 4 cut(s) 111, 280, 464, 543
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
Eco130I CCWWGG 3 cut(s) 30, 353, 471
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 610, 734
Eco81I CCTNAGG 1 cut(s) 264
EcoO109I RGGNCCY 3 cut(s) 349, 350, 734
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 606, 730
EcoT14I CCWWGG 3 cut(s) 30, 353, 471
EcoT22I ATGCAT 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 3 cut(s) 30, 353, 471
FaeI CATG 3 cut(s) 57, 475, 773
FaqI GGGAC 1 cut(s) 720
FatI CATG 3 cut(s) 53, 471, 769
FauI CCCGC 1 cut(s) 637
FauNDI CATATG 1 cut(s) 389
FblI GTMKAC 2 cut(s) 26, 528
FokI GGATG 3 cut(s) 108, 167, 714
FriOI GRGCYC 1 cut(s) 353
FspBI CTAG 3 cut(s) 210, 443, 753
HaeIII GGCC 4 cut(s) 12, 351, 386, 628
HapII CCGG 1 cut(s) 14
Hin1II CATG 3 cut(s) 57, 475, 773
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 3 cut(s) 560, 597, 652
HpaII CCGG 1 cut(s) 14
HphI GGTGA 2 cut(s) 308, 756
Hpy166II GTNNAC 2 cut(s) 27, 529
Hpy188I TCNGA 7 cut(s) 8, 291, 433, 543, 565, 604, 646
Hpy188III TCNNGA 2 cut(s) 139, 572
Hpy8I GTNNAC 2 cut(s) 27, 529
HpyAV CCTTC 2 cut(s) 136, 791
HpyCH4III ACNGT 2 cut(s) 131, 526
HpyCH4V TGCA 7 cut(s) 53, 230, 393, 479, 485, 500, 667
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 634
HpyF3I CTNAG 5 cut(s) 264, 558, 583, 633, 757
Hsp92II CATG 3 cut(s) 57, 475, 773
Kzo9I GATC 4 cut(s) 111, 280, 464, 543
LmnI GCTCC 1 cut(s) 379
MaeI CTAG 3 cut(s) 210, 443, 753
MalI GATC 4 cut(s) 113, 282, 466, 545
MboI GATC 4 cut(s) 111, 280, 464, 543
MboII GAAGA 6 cut(s) 50, 191, 459, 663, 716, 821
MflI RGATCY 2 cut(s) 111, 464
MhlI GDGCHC 2 cut(s) 353, 409
MluCI AATT 3 cut(s) 39, 313, 396
MlyI GAGTC 2 cut(s) 569, 661
MnlI CCTC 5 cut(s) 78, 145, 259, 312, 541
Mph1103I ATGCAT 1 cut(s) 395
MseI TTAA 6 cut(s) 36, 87, 116, 171, 324, 816
MslI CAYNNNNRTG 2 cut(s) 688, 774
MspA1I CMGCKG 1 cut(s) 632
MspCI CTTAAG 1 cut(s) 323
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 3 cut(s) 14, 608, 732
MvaI CCWGG 2 cut(s) 608, 732
MwoI GCNNNNNNNGC 2 cut(s) 629, 634
NciI CCSGG 1 cut(s) 14
NcoI CCATGG 1 cut(s) 471
NdeI CATATG 1 cut(s) 389
NdeII GATC 4 cut(s) 111, 280, 464, 543
NlaIII CATG 3 cut(s) 57, 475, 773
NlaIV GGNNCC 3 cut(s) 351, 612, 736
NmeAIII GCCGAG 1 cut(s) 604
NsiI ATGCAT 1 cut(s) 395
NspI RCATGY 2 cut(s) 57, 773
PaeI GCATGC 1 cut(s) 773
PfeI GAWTC 1 cut(s) 597
PleI GAGTC 2 cut(s) 568, 660
PpsI GAGTC 2 cut(s) 568, 660
PpuMI RGGWCCY 1 cut(s) 734
Psp5II RGGWCCY 1 cut(s) 734
Psp6I CCWGG 2 cut(s) 606, 730
PspGI CCWGG 2 cut(s) 606, 730
PspN4I GGNNCC 3 cut(s) 351, 612, 736
PspOMI GGGCCC 1 cut(s) 349
PspPI GGNCC 6 cut(s) 11, 349, 350, 610, 627, 734
PspPPI RGGWCCY 1 cut(s) 734
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 111, 464
RseI CAYNNNNRTG 2 cut(s) 688, 774
SalI GTCGAC 1 cut(s) 25
SaqAI TTAA 6 cut(s) 36, 87, 116, 171, 324, 816
Sau3AI GATC 4 cut(s) 111, 280, 464, 543
Sau96I GGNCC 6 cut(s) 11, 349, 350, 610, 627, 734
SchI GAGTC 2 cut(s) 569, 661
ScrFI CCNGG 3 cut(s) 14, 608, 732
SduI GDGCHC 2 cut(s) 353, 409
SfcI CTRYAG 2 cut(s) 223, 421
SinI GGWCC 2 cut(s) 610, 734
SmiMI CAYNNNNRTG 2 cut(s) 688, 774
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SphI GCATGC 1 cut(s) 773
Sse9I AATT 3 cut(s) 39, 313, 396
SsiI CCGC 2 cut(s) 630, 767
SspMI CTAG 3 cut(s) 210, 443, 753
StyD4I CCNGG 3 cut(s) 12, 606, 730
StyI CCWWGG 3 cut(s) 30, 353, 471
TaaI ACNGT 2 cut(s) 131, 526
TaqI TCGA 4 cut(s) 26, 78, 317, 546
TasI AATT 3 cut(s) 39, 313, 396
TfiI GAWTC 1 cut(s) 597
Tru1I TTAA 6 cut(s) 36, 87, 116, 171, 324, 816
Tru9I TTAA 6 cut(s) 36, 87, 116, 171, 324, 816
TscAI CASTG 1 cut(s) 237
TspDTI ATGAA 2 cut(s) 482, 716
TspRI CASTG 1 cut(s) 237
Vha464I CTTAAG 1 cut(s) 323
VpaK11BI GGWCC 2 cut(s) 610, 734
XapI RAATTY 2 cut(s) 39, 313
XceI RCATGY 2 cut(s) 57, 773
XmiI GTMKAC 2 cut(s) 26, 528
XspI CTAG 3 cut(s) 210, 443, 753
Zsp2I ATGCAT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.