Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007793

Physical Location & Seq

Genomic Coordinates Forward (+)

1102222 .. 1102869

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1003100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGACAACACTGGTGAAAAGAAGGAGATTGAATGGATAGAGAGAGTGAGATCAGAAGGAGCTGTTCCACTTCTTGATCCGGACAATTGCCGAAATGGTTGGGCTTCTCCACCTGGATACAAGTTCTTGGTTAGAGGTCCAGACTACTTGTCAACCAGGGTTAAGGTTTCTACTGGTGAATATCTTCTAAAGTCTCTTGGTTTTGATTGGATTAGAAGTTCGACAAAGATTGGGGAGGTCTTAAAACATCCAAGTAGTCAGCCTATTCCGGAGGGGTCTTTGATGGACCAGTTCTTGAAAGGTGATGATGGGATTAGGAATTCGAGGCTTAAATTGATTGCCAACATTGTCAAGGGCCCTTGGATTGTGAGGAAAGCAGTTGGGGAGCAGGCCATATGCATAATTGGGCATGCCCTTTCTTGTAATTATTGTGCATCAGATAGTTTCTTAGAAGTAGACATGGATATTGGGTCTTCCATGGTTGCAAGTGCAATAGTTCATCTTGCATCTGGTTATATCACAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

176

Amino Acids

19.21

Weight (kDa)

6.3

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EDR2_C	PF07059	34 - 86	1e-11	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
EDR2_C	PF07059	87 - 174	7.7e-27	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06050
fragaria_vesca	FvH4_4g10940 FvH4_4g10940 FvH4_4g10940 FvH4_4g10940 FvH4_4g10940
malus_domestica	MD05G1003100.v1.1 MD10G1004000.v1.1
prunus_persica	Prupe.2G102100_v2.0.a1 Prupe.2G102100_v2.0.a1 Prupe.2G102100_v2.0.a1
pyrus_communis	pycom05g00280 pycom10g00320
rosa_chinensis	RchiOBHm_Chr4g0406431
rosa_laevigata	RLG00000008772
rosa_multiflora	Rmu_ssc0000186.1_g000010
rosa_roxburghii	Rroxscaffold_5G00351270
rosa_rugosa	Rorug04G0071100 Rorug04G0071200
rosa_samantha	Rh4AG138200 Rh4BG135400 Rh4CG145800 Rh4DG132800
rosa_wichuraiana	Rw4G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	456
AccIII	TCCGGA	2 cut(s)	79, 268
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	32, 298
AhdI	GACNNNNNGTC	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	112, 155
AloI	GAACNNNNNNTCC	2 cut(s)	202, 234
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	71
Aor13HI	TCCGGA	2 cut(s)	79, 268
AoxI	GGCC	2 cut(s)	355, 390
ApaI	GGGCCC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	183
AspS9I	GGNCC	4 cut(s)	137, 286, 355, 356
AsuHPI	GGTGA	3 cut(s)	26, 188, 314
AvaII	GGWCC	2 cut(s)	137, 286
BaeGI	GKGCMC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	465
BccI	CCATC	2 cut(s)	277, 302
BciT130I	CCWGG	2 cut(s)	114, 157
BciVI	GTATCC	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	110
Bme1390I	CCNGG	2 cut(s)	114, 157
Bme18I	GGWCC	2 cut(s)	137, 286
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	4 cut(s)	137, 286, 355, 356
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	2 cut(s)	114, 157
BmsI	GCATC	2 cut(s)	443, 515
BpiI	GAAGAC	1 cut(s)	465
BsaJI	CCNNGG	3 cut(s)	156, 359, 477
BsaWI	WCCGGW	2 cut(s)	79, 268
Bse1I	ACTGG	3 cut(s)	16, 178, 289
BseAI	TCCGGA	2 cut(s)	79, 268
BseBI	CCWGG	2 cut(s)	114, 157
BseDI	CCNNGG	3 cut(s)	156, 359, 477
BseGI	GGATG	1 cut(s)	247
BseNI	ACTGG	3 cut(s)	16, 178, 289
BseSI	GKGCMC	1 cut(s)	359
BshFI	GGCC	2 cut(s)	357, 392
BsiSI	CCGG	2 cut(s)	80, 269
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	357, 392
Bsp120I	GGGCCC	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp13I	TCCGGA	2 cut(s)	79, 268
Bsp143I	GATC	2 cut(s)	50, 76
Bsp19I	CCATGG	1 cut(s)	477
BspANI	GGCC	2 cut(s)	357, 392
BspEI	TCCGGA	2 cut(s)	79, 268
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	71
BsrI	ACTGG	3 cut(s)	16, 178, 289
BssECI	CCNNGG	3 cut(s)	156, 359, 477
BssMI	GATC	2 cut(s)	50, 76
BssT1I	CCWWGG	2 cut(s)	359, 477
Bst2UI	CCWGG	2 cut(s)	114, 157
BstC8I	GCNNGC	2 cut(s)	390, 411
BstDEI	CTNAG	1 cut(s)	448
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	53, 79
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	2 cut(s)	50, 76
BstNI	CCWGG	2 cut(s)	114, 157
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	112, 155
BstSLI	GKGCMC	1 cut(s)	359
BstV2I	GAAGAC	1 cut(s)	465
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	357, 392
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	2 cut(s)	390, 411
Cfr13I	GGNCC	4 cut(s)	137, 286, 355, 356
CviAII	CATG	3 cut(s)	410, 460, 478
CviJI	RGCY	6 cut(s)	62, 104, 262, 328, 357, 392
CviKI_1	RGCY	6 cut(s)	62, 104, 262, 328, 357, 392
DdeI	CTNAG	1 cut(s)	448
DpnI	GATC	2 cut(s)	52, 78
DpnII	GATC	2 cut(s)	50, 76
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1105I	GACNNNNNGTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	359, 477
Eco24I	GRGCYC	1 cut(s)	359
Eco47I	GGWCC	2 cut(s)	137, 286
EcoO109I	RGGNCCY	2 cut(s)	355, 356
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	2 cut(s)	112, 155
EcoT14I	CCWWGG	2 cut(s)	359, 477
EcoT22I	ATGCAT	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	359
ErhI	CCWWGG	2 cut(s)	359, 477
FaeI	CATG	3 cut(s)	413, 463, 481
FaiI	YATR	7 cut(s)	395, 397, 401, 411, 461, 479, 516
FatI	CATG	3 cut(s)	409, 459, 477
FauNDI	CATATG	1 cut(s)	395
FblI	GTMKAC	1 cut(s)	456
FokI	GGATG	1 cut(s)	234
FriOI	GRGCYC	1 cut(s)	359
HaeIII	GGCC	2 cut(s)	357, 392
HapII	CCGG	2 cut(s)	80, 269
Hin1II	CATG	3 cut(s)	413, 463, 481
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HpaII	CCGG	2 cut(s)	80, 269
HphI	GGTGA	3 cut(s)	26, 188, 314
Hpy166II	GTNNAC	2 cut(s)	153, 457
Hpy188I	TCNGA	2 cut(s)	55, 439
Hpy188III	TCNNGA	5 cut(s)	74, 80, 140, 269, 295
Hpy8I	GTNNAC	2 cut(s)	153, 457
HpyAV	CCTTC	2 cut(s)	16, 50
HpyCH4V	TGCA	5 cut(s)	399, 434, 485, 491, 506
HpyF3I	CTNAG	1 cut(s)	448
Hsp92II	CATG	3 cut(s)	413, 463, 481
Kpn2I	TCCGGA	2 cut(s)	79, 268
Kzo9I	GATC	2 cut(s)	50, 76
LmnI	GCTCC	2 cut(s)	59, 385
LweI	GCATC	2 cut(s)	443, 515
MalI	GATC	2 cut(s)	52, 78
MboI	GATC	2 cut(s)	50, 76
MboII	GAAGA	2 cut(s)	176, 465
MfeI	CAATTG	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	5 cut(s)	85, 319, 332, 402, 424
MnlI	CCTC	5 cut(s)	128, 229, 265, 318, 363
Mph1103I	ATGCAT	1 cut(s)	401
MroI	TCCGGA	2 cut(s)	79, 268
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	3 cut(s)	162, 242, 330
MspI	CCGG	2 cut(s)	80, 269
MspR9I	CCNGG	2 cut(s)	114, 157
MunI	CAATTG	1 cut(s)	85
MvaI	CCWGG	2 cut(s)	114, 157
NcoI	CCATGG	1 cut(s)	477
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	2 cut(s)	50, 76
NlaIII	CATG	3 cut(s)	413, 463, 481
NlaIV	GGNNCC	1 cut(s)	357
NsiI	ATGCAT	1 cut(s)	401
NspI	RCATGY	1 cut(s)	413
PaeI	GCATGC	1 cut(s)	413
PdmI	GAANNNNTTC	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	112, 155
PspGI	CCWGG	2 cut(s)	112, 155
PspN4I	GGNNCC	1 cut(s)	357
PspOMI	GGGCCC	1 cut(s)	355
PspPI	GGNCC	4 cut(s)	137, 286, 355, 356
SaqAI	TTAA	3 cut(s)	162, 242, 330
Sau3AI	GATC	2 cut(s)	50, 76
Sau96I	GGNCC	4 cut(s)	137, 286, 355, 356
ScrFI	CCNGG	2 cut(s)	114, 157
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	7 cut(s)	64, 115, 139, 168, 240, 304, 527
SfaNI	GCATC	2 cut(s)	443, 515
SinI	GGWCC	2 cut(s)	137, 286
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	5 cut(s)	85, 319, 332, 402, 424
StyD4I	CCNGG	2 cut(s)	112, 155
StyI	CCWWGG	2 cut(s)	359, 477
TaqI	TCGA	2 cut(s)	221, 323
TasI	AATT	5 cut(s)	85, 319, 332, 402, 424
Tru1I	TTAA	3 cut(s)	162, 242, 330
Tru9I	TTAA	3 cut(s)	162, 242, 330
TscAI	CASTG	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	2 cut(s)	137, 286
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.