Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007793

Physical Location & Seq

Genomic Coordinates Forward (+)

15796391 .. 15799513

Gene Structure 3123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G102100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCCAGCACTGGTGGAAAAAAGGAGCTTGAATGGATAGAGAGAGTGAGATCAGAGGGAGCTGTTCCACTTCTTGATGCAGAAAATTGCCGAAATGGTTGGTCTTCTCCACCTGCGGACAAGTTTATGGTTAGAGGTCCTGAGTACCTGTCAAACAGGGTTAAAGTTCCTGCTGGGGAATACCTTCTAAAGCCTCTTGGTTTTGATTGGATAAGAGGTTCTACAAAAATTGGGGAGGTCTTAAAACATCCAAACAGTCGTGTGAGAAAGGCTATTGAGGATGAGTGTCTGACAGGTGATAAGCCTTTTGTTTGGGCTTTCAATCTACAAGTTCCTAGTAAGGATAATTATAGTGCTATAGCATATTTTACAACCAAGGAACCTATTCCTGAGGGGTCTTTGATGGACCAGTTCTTAAAAGGTGATGATGGGTTTAGGAATTCAAGGCTTAAATTGATTGCCAACATTGTGAAGGGTCCTTGGATTGTGAGGAAAGCAGTTGGGGAGCAGGCCATATGCATAATTGGGCGTGCCCTTTCTTGTAAATATTGTGTATCAGACAATTTCTTAGAAGTAGATGTGGATATTGGATCTTCCATGGTTGCAAGTGCAATAGTTCATCTGGCATTTGGTTATATAACAACGCTGACTGTTGACCTTGCCTTTCTCATTGAGGGCCAAACTGAATCAGAGCTACCAGAACAAATCTTAGGTGCTGTAAGGTTCTCTGAACTAGACCCTGCTGTGGCTAGGGCAACTGAACCATCTTCTAGTAGGAGTGCTGGCAATTTGCAGTCTAATCTGCCTACGCGATTATGGAAGTCAATAGGGCAGGGGTTTTCCCACATGCTTCATCCAGGTACCCAAGAAAATGGCTCTAGCTTGGGCTCAGCACATGGTAATGGGATTGGGGATCATGAAGGAAATTCAGAAGAACCTAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

316

Amino Acids

34.39

Weight (kDa)

5.94

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06050
fragaria_vesca	FvH4_4g10940 FvH4_4g10940 FvH4_4g10940 FvH4_4g10940 FvH4_4g10940
malus_domestica	MD05G1003100.v1.1 MD10G1004000.v1.1
prunus_persica	Prupe.2G102100_v2.0.a1 Prupe.2G102100_v2.0.a1 Prupe.2G102100_v2.0.a1
pyrus_communis	pycom05g00280 pycom10g00320
rosa_chinensis	RchiOBHm_Chr4g0406431
rosa_laevigata	RLG00000008772
rosa_multiflora	Rmu_ssc0000186.1_g000010
rosa_roxburghii	Rroxscaffold_5G00351270
rosa_rugosa	Rorug04G0071100 Rorug04G0071200
rosa_samantha	Rh4AG138200 Rh4BG135400 Rh4CG145800 Rh4DG132800
rosa_wichuraiana	Rw4G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	121
Acc65I	GGTACC	1 cut(s)	860
AccB1I	GGYRCC	1 cut(s)	860
AccII	CGCG	1 cut(s)	811
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	2 cut(s)	598, 921
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	439, 925
AfaI	GTAC	2 cut(s)	146, 862
AfiI	CCNNNNNNNGG	1 cut(s)	745
AgsI	TTSAA	3 cut(s)	32, 322, 444
AjnI	CCWGG	1 cut(s)	856
AloI	GAACNNNNNNTCC	2 cut(s)	202, 234
AluBI	AGCT	4 cut(s)	28, 62, 694, 882
AluI	AGCT	4 cut(s)	28, 62, 694, 882
AlwI	GGATC	2 cut(s)	598, 921
AoxI	GGCC	3 cut(s)	3, 510, 676
ApoI	RAATTY	2 cut(s)	439, 925
Asp700I	GAANNNNTTC	2 cut(s)	183, 384
Asp718I	GGTACC	1 cut(s)	860
AspS9I	GGNCC	4 cut(s)	137, 406, 476, 676
AsuHPI	GGTGA	2 cut(s)	308, 434
AvaII	GGWCC	3 cut(s)	137, 406, 476
AxyI	CCTNAGG	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	535
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	860
BanII	GRGCYC	1 cut(s)	890
BbsI	GAAGAC	1 cut(s)	96
BccI	CCATC	3 cut(s)	397, 422, 772
BciT130I	CCWGG	1 cut(s)	858
BfaI	CTAG	5 cut(s)	336, 734, 750, 771, 879
BfmI	CTRYAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	121
BlpI	GCTNAGC	1 cut(s)	889
Bme1390I	CCNGG	1 cut(s)	858
Bme18I	GGWCC	3 cut(s)	137, 406, 476
BmgT120I	GGNCC	4 cut(s)	137, 406, 476, 676
BmiI	GGNNCC	3 cut(s)	381, 477, 862
BmrFI	CCNGG	1 cut(s)	858
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	889
BsaJI	CCNNGG	3 cut(s)	375, 479, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	745
Bse1I	ACTGG	2 cut(s)	16, 409
Bse21I	CCTNAGG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	858
BseDI	CCNNGG	3 cut(s)	375, 479, 597
BseGI	GGATG	3 cut(s)	247, 286, 853
BseLI	CCNNNNNNNGG	1 cut(s)	745
BseMII	CTCAG	3 cut(s)	132, 381, 903
BseNI	ACTGG	2 cut(s)	16, 409
BseSI	GKGCMC	1 cut(s)	535
BseYI	CCCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	811
BshFI	GGCC	3 cut(s)	5, 512, 678
BshNI	GGYRCC	1 cut(s)	860
BslI	CCNNNNNNNGG	1 cut(s)	745
BsnI	GGCC	3 cut(s)	5, 512, 678
Bsp1286I	GDGCHC	2 cut(s)	535, 890
Bsp143I	GATC	3 cut(s)	50, 590, 913
Bsp1720I	GCTNAGC	1 cut(s)	889
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	3 cut(s)	5, 512, 678
BspCNI	CTCAG	3 cut(s)	133, 382, 902
BspFNI	CGCG	1 cut(s)	811
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	3 cut(s)	381, 477, 862
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	2 cut(s)	598, 921
BspT107I	GGYRCC	1 cut(s)	860
BsrI	ACTGG	2 cut(s)	16, 409
BssECI	CCNNGG	3 cut(s)	375, 479, 597
BssMI	GATC	3 cut(s)	50, 590, 913
BssT1I	CCWWGG	3 cut(s)	375, 479, 597
Bst2UI	CCWGG	1 cut(s)	858
Bst4CI	ACNGT	2 cut(s)	257, 652
BstC8I	GCNNGC	4 cut(s)	7, 510, 531, 784
BstDEI	CTNAG	6 cut(s)	141, 390, 568, 709, 889, 939
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	3 cut(s)	247, 286, 853
BstFNI	CGCG	1 cut(s)	811
BstKTI	GATC	3 cut(s)	53, 593, 916
BstMBI	GATC	3 cut(s)	50, 590, 913
BstNI	CCWGG	1 cut(s)	858
BstNSI	RCATGY	1 cut(s)	850
BstSCI	CCNGG	1 cut(s)	856
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	535
BstUI	CGCG	1 cut(s)	811
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	590
BstXI	CCANNNNNNTGG	1 cut(s)	872
BstYI	RGATCY	1 cut(s)	590
Bsu36I	CCTNAGG	1 cut(s)	390
BsuRI	GGCC	3 cut(s)	5, 512, 678
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	247, 286, 853
BtsIMutI	CAGTG	1 cut(s)	9
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	4 cut(s)	7, 510, 531, 784
CciI	TCATGA	1 cut(s)	916
Cfr13I	GGNCC	4 cut(s)	137, 406, 476, 676
Csp6I	GTAC	2 cut(s)	145, 861
CviAII	CATG	4 cut(s)	598, 847, 896, 917
CviQI	GTAC	2 cut(s)	145, 861
DdeI	CTNAG	6 cut(s)	141, 390, 568, 709, 889, 939
DpnI	GATC	3 cut(s)	52, 592, 915
DpnII	GATC	3 cut(s)	50, 590, 913
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	3 cut(s)	375, 479, 597
Eco24I	GRGCYC	1 cut(s)	890
Eco47I	GGWCC	3 cut(s)	137, 406, 476
Eco81I	CCTNAGG	1 cut(s)	390
EcoO109I	RGGNCCY	2 cut(s)	137, 476
EcoRI	GAATTC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	856
EcoT14I	CCWWGG	3 cut(s)	375, 479, 597
EcoT22I	ATGCAT	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	890
ErhI	CCWWGG	3 cut(s)	375, 479, 597
FaeI	CATG	4 cut(s)	601, 850, 899, 920
FatI	CATG	4 cut(s)	597, 846, 895, 916
FauNDI	CATATG	1 cut(s)	515
FokI	GGATG	3 cut(s)	234, 293, 840
FriOI	GRGCYC	1 cut(s)	890
FspBI	CTAG	5 cut(s)	336, 734, 750, 771, 879
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	5, 512, 678
Hin1II	CATG	4 cut(s)	601, 850, 899, 920
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	1 cut(s)	686
HphI	GGTGA	2 cut(s)	308, 434
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	6 cut(s)	55, 291, 559, 691, 730, 931
Hpy188III	TCNNGA	4 cut(s)	74, 140, 389, 917
Hpy8I	GTNNAC	1 cut(s)	655
HpyAV	CCTTC	3 cut(s)	194, 466, 914
HpyCH4III	ACNGT	2 cut(s)	257, 652
HpyCH4V	TGCA	5 cut(s)	80, 519, 605, 611, 793
HpyF3I	CTNAG	6 cut(s)	141, 390, 568, 709, 889, 939
Hsp92II	CATG	4 cut(s)	601, 850, 899, 920
KpnI	GGTACC	1 cut(s)	864
Kzo9I	GATC	3 cut(s)	50, 590, 913
LmnI	GCTCC	3 cut(s)	25, 59, 505
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	5 cut(s)	336, 734, 750, 771, 879
MalI	GATC	3 cut(s)	52, 592, 915
MboI	GATC	3 cut(s)	50, 590, 913
MboII	GAAGA	4 cut(s)	96, 585, 759, 944
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	2 cut(s)	535, 890
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	85, 228, 346, 439, 452, 522, 562, 787, 925
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	9 cut(s)	49, 128, 204, 209, 229, 271, 385, 483, 667
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	521
MroXI	GAANNNNTTC	2 cut(s)	183, 384
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	162, 242, 416, 450
MslI	CAYNNNNRTG	1 cut(s)	900
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	858
MvaI	CCWGG	1 cut(s)	858
MvnI	CGCG	1 cut(s)	811
NcoI	CCATGG	1 cut(s)	597
NdeI	CATATG	1 cut(s)	515
NdeII	GATC	3 cut(s)	50, 590, 913
NlaIII	CATG	4 cut(s)	601, 850, 899, 920
NlaIV	GGNNCC	3 cut(s)	381, 477, 862
NsiI	ATGCAT	1 cut(s)	521
NspI	RCATGY	1 cut(s)	850
PagI	TCATGA	1 cut(s)	916
PaqCI	CACCTGC	1 cut(s)	121
PdmI	GAANNNNTTC	2 cut(s)	183, 384
PfeI	GAWTC	1 cut(s)	686
PpuMI	RGGWCCY	2 cut(s)	137, 476
Psp5II	RGGWCCY	2 cut(s)	137, 476
Psp6I	CCWGG	1 cut(s)	856
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	856
PspN4I	GGNNCC	3 cut(s)	381, 477, 862
PspPI	GGNCC	4 cut(s)	137, 406, 476, 676
PspPPI	RGGWCCY	2 cut(s)	137, 476
PsuI	RGATCY	1 cut(s)	590
RsaI	GTAC	2 cut(s)	146, 862
RsaNI	GTAC	2 cut(s)	145, 861
RseI	CAYNNNNRTG	1 cut(s)	900
SaqAI	TTAA	4 cut(s)	162, 242, 416, 450
Sau3AI	GATC	3 cut(s)	50, 590, 913
Sau96I	GGNCC	4 cut(s)	137, 406, 476, 676
ScrFI	CCNGG	1 cut(s)	858
SduI	GDGCHC	2 cut(s)	535, 890
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	3 cut(s)	137, 406, 476
SmiMI	CAYNNNNRTG	1 cut(s)	900
Sse9I	AATT	9 cut(s)	85, 228, 346, 439, 452, 522, 562, 787, 925
SsiI	CCGC	1 cut(s)	116
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	5 cut(s)	336, 734, 750, 771, 879
StyD4I	CCNGG	1 cut(s)	856
StyI	CCWWGG	3 cut(s)	375, 479, 597
TaaI	ACNGT	2 cut(s)	257, 652
TasI	AATT	9 cut(s)	85, 228, 346, 439, 452, 522, 562, 787, 925
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	4 cut(s)	162, 242, 416, 450
Tru9I	TTAA	4 cut(s)	162, 242, 416, 450
TscAI	CASTG	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	608, 842, 933
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	3 cut(s)	137, 406, 476
XapI	RAATTY	2 cut(s)	439, 925
XceI	RCATGY	1 cut(s)	850
XmnI	GAANNNNTTC	2 cut(s)	183, 384
XspI	CTAG	5 cut(s)	336, 734, 750, 771, 879
Zsp2I	ATGCAT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.