FvH4_4g10940

Protein of unknown function (DUF1336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007793
Physical Location & Seq
Reverse (-)
14628606 .. 14631537
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10940.t2

Sequence Viewer

Length: 939 bp
ATGGCCAGCAAAAGGGAGGCTGAATGGATGGGAAGAGCGAGATCAGAGGGTGCTGTTCCACTTGTTGATGCAGACACTTGTCAAACTGGCTGGGCTTGTCCACCTGCACACAAGTTCAGGGTCAGAGGCCCAGATTACTTGTCAACCAAGGTTAAAATTCCCGCCGGCGGTTGTCTTCTCAAGCCTATTGGATTCGATTGGATTAAAAGTTCTTCAAAGATTGCAGACATCTTGAAACATCCTAATAGTCGTGTCAGGAAGGTTATTGAGGATGAGTTTCAGACAGGTGATAAGCCTTTTGTTTGGGCTTTCAATCTTCAAGTTCCGAGTAAGGATCACTACAGTGCAGTGGCATATTTCACAACATCAGAGCCTATCCCCAAGGGGTCTCTGATGGATCAGTTTCTGAAAGGTGATGACGGGTTTAGGAATTCAAGGCTTAAGTTGATTGCCAACATTGTCAAGGGCCCTTGGATTGTGAGAAAAGCGGTTGGGGAGCAGGCCATATGCATCATTGGTCGTGCCCTCTCTTGTAACTACAGGATATCAGACAGTTATCTAGAAGTAGATGTAGACATTGGATCTTCCATGGTTGCAAGTGCAATAGTTCATCTAGCATTTGGTTATATCACAACTTTGACTGTAGACCTTGCCTTTCTGATAGAGAGTCAAACTGAGTCAGAGCTTCCAGAGCAGCTCTTAGGTGCTGTAAGATTCTCTAACCTAGACCCTGCTGTGGCTAGGCCTGCCGAATCATCATCTGATAGGAGTCCTGGCATTTTACAGTCTTCTCTGCCTACCCGACTATGGAAATCACTTGGGCAGGGTTTCTCCCATATTCTTCATCCAGGTGCCCAAGATGGCTCTAGGTCAGGCTCACCACAAGCTAATGGAACTGGAGAGAATAAAGTTGACAGTGTTGAAGAGATTAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

313

Amino Acids

34.02

Weight (kDa)

6.61

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 31 - 243 1.3e-78 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 851
AccI GTMKAC 2 cut(s) 573, 645
AciI CCGC 3 cut(s) 162, 168, 488
AclWI GGATC 3 cut(s) 342, 405, 589
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 156, 430
AfiI CCNNNNNNNGG 4 cut(s) 12, 167, 736, 807
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 6 cut(s) 216, 235, 313, 320, 435, 923
AjnI CCWGG 2 cut(s) 772, 847
AleI CACNNNNGTG 1 cut(s) 342
AloI GAACNNNNNNTCC 2 cut(s) 193, 225
AluBI AGCT 3 cut(s) 685, 697, 887
AluI AGCT 3 cut(s) 685, 697, 887
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 3 cut(s) 342, 405, 589
AlwNI CAGNNNCTG 1 cut(s) 406
AoxI GGCC 5 cut(s) 3, 127, 466, 501, 743
ApaI GGGCCC 1 cut(s) 470
ApeKI GCWGC 1 cut(s) 694
ApoI RAATTY 2 cut(s) 156, 430
AspS9I GGNCC 3 cut(s) 128, 466, 467
AsuHPI GGTGA 3 cut(s) 299, 425, 870
BaeGI GKGCMC 3 cut(s) 470, 526, 856
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 851
BanII GRGCYC 1 cut(s) 470
BbsI GAAGAC 2 cut(s) 167, 780
BbvI GCAGC 1 cut(s) 706
BccI CCATC 3 cut(s) 22, 388, 854
BciT130I CCWGG 2 cut(s) 774, 849
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 5 cut(s) 560, 614, 725, 741, 867
BfmI CTRYAG 3 cut(s) 340, 538, 642
BfrI CTTAAG 1 cut(s) 440
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 695
BlsI GCNGC 1 cut(s) 696
Bme1390I CCNGG 2 cut(s) 774, 849
BmgT120I GGNCC 3 cut(s) 128, 466, 467
BmiI GGNNCC 2 cut(s) 468, 853
BmrFI CCNGG 2 cut(s) 774, 849
BmsI GCATC 2 cut(s) 58, 519
BoxI GACNNNNGTC 1 cut(s) 78
BpiI GAAGAC 2 cut(s) 167, 780
BpmI CTGGAG 1 cut(s) 918
BpuEI CTTGAG 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 4 cut(s) 147, 381, 470, 588
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 167, 736, 807
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 91, 901
BseBI CCWGG 2 cut(s) 774, 849
BseDI CCNNGG 4 cut(s) 147, 381, 470, 588
BseGI GGATG 4 cut(s) 33, 238, 277, 844
BseLI CCNNNNNNNGG 4 cut(s) 12, 167, 736, 807
BseMII CTCAG 1 cut(s) 666
BseNI ACTGG 2 cut(s) 91, 901
BseSI GKGCMC 3 cut(s) 470, 526, 856
BseXI GCAGC 1 cut(s) 706
BseYI CCCAGC 1 cut(s) 90
BsgI GTGCAG 2 cut(s) 90, 366
BshFI GGCC 5 cut(s) 5, 129, 468, 503, 745
BshNI GGYRCC 1 cut(s) 851
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 4 cut(s) 12, 167, 736, 807
BsmAI GTCTC 1 cut(s) 393
BsnI GGCC 5 cut(s) 5, 129, 468, 503, 745
Bso31I GGTCTC 1 cut(s) 393
Bsp120I GGGCCC 1 cut(s) 466
Bsp1286I GDGCHC 3 cut(s) 470, 526, 856
Bsp143I GATC 4 cut(s) 41, 334, 397, 581
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 3 cut(s) 162, 168, 488
BspANI GGCC 5 cut(s) 5, 129, 468, 503, 745
BspCNI CTCAG 1 cut(s) 667
BspLI GGNNCC 2 cut(s) 468, 853
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 3 cut(s) 342, 405, 589
BspQI GCTCTTC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 851
BspTI CTTAAG 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 2 cut(s) 91, 901
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 4 cut(s) 147, 381, 470, 588
BssMI GATC 4 cut(s) 41, 334, 397, 581
BssT1I CCWWGG 4 cut(s) 147, 381, 470, 588
Bst2UI CCWGG 2 cut(s) 774, 849
Bst4CI ACNGT 5 cut(s) 344, 554, 643, 786, 917
Bst6I CTCTTC 2 cut(s) 28, 918
BstAFI CTTAAG 1 cut(s) 440
BstC8I GCNNGC 4 cut(s) 7, 166, 501, 747
BstDEI CTNAG 2 cut(s) 675, 700
BstDSI CCRYGG 1 cut(s) 588
BstF5I GGATG 4 cut(s) 33, 238, 277, 844
BstKTI GATC 4 cut(s) 44, 337, 400, 584
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 4 cut(s) 41, 334, 397, 581
BstMWI GCNNNNNNNGC 2 cut(s) 691, 746
BstNI CCWGG 2 cut(s) 774, 849
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 772, 847
BstSFI CTRYAG 3 cut(s) 340, 538, 642
BstSLI GKGCMC 3 cut(s) 470, 526, 856
BstV1I GCAGC 1 cut(s) 706
BstV2I GAAGAC 2 cut(s) 167, 780
BstX2I RGATCY 1 cut(s) 581
BstYI RGATCY 1 cut(s) 581
BsuRI GGCC 5 cut(s) 5, 129, 468, 503, 745
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 4 cut(s) 33, 238, 277, 844
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 3 cut(s) 349, 354, 922
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 4 cut(s) 7, 166, 501, 747
CaiI CAGNNNCTG 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 3 cut(s) 128, 466, 467
CviAII CATG 1 cut(s) 589
DdeI CTNAG 2 cut(s) 675, 700
DpnI GATC 4 cut(s) 43, 336, 399, 583
DpnII GATC 4 cut(s) 41, 334, 397, 581
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 28, 918
EarI CTCTTC 2 cut(s) 28, 918
Eco130I CCWWGG 4 cut(s) 147, 381, 470, 588
Eco147I AGGCCT 1 cut(s) 745
Eco24I GRGCYC 1 cut(s) 470
Eco31I GGTCTC 1 cut(s) 393
Eco32I GATATC 1 cut(s) 546
EcoO109I RGGNCCY 2 cut(s) 466, 467
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 772, 847
EcoRV GATATC 1 cut(s) 546
EcoT14I CCWWGG 4 cut(s) 147, 381, 470, 588
EcoT22I ATGCAT 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 4 cut(s) 147, 381, 470, 588
FaeI CATG 1 cut(s) 592
FaiI YATR 7 cut(s) 355, 506, 508, 590, 627, 808, 837
FatI CATG 1 cut(s) 588
FauI CCCGC 1 cut(s) 169
FauNDI CATATG 1 cut(s) 506
FblI GTMKAC 2 cut(s) 573, 645
Fnu4HI GCNGC 1 cut(s) 695
FokI GGATG 4 cut(s) 40, 225, 284, 831
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 695
FspBI CTAG 5 cut(s) 560, 614, 725, 741, 867
GluI GCNGC 1 cut(s) 695
GsaI CCCAGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 918
HaeIII GGCC 5 cut(s) 5, 129, 468, 503, 745
HapII CCGG 1 cut(s) 165
Hin1II CATG 1 cut(s) 592
HincII GTYRAC 2 cut(s) 144, 913
HindII GTYRAC 2 cut(s) 144, 913
HinfI GANTC 6 cut(s) 192, 667, 677, 714, 752, 769
HpaII CCGG 1 cut(s) 165
HphI GGTGA 3 cut(s) 299, 425, 870
Hpy166II GTNNAC 5 cut(s) 101, 144, 574, 646, 913
Hpy188III TCNNGA 4 cut(s) 232, 256, 560, 689
Hpy8I GTNNAC 5 cut(s) 101, 144, 574, 646, 913
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 5 cut(s) 344, 554, 643, 786, 917
HpyCH4V TGCA 7 cut(s) 71, 107, 224, 347, 510, 596, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 691, 746
HpyF3I CTNAG 2 cut(s) 675, 700
Hsp92II CATG 1 cut(s) 592
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Kzo9I GATC 4 cut(s) 41, 334, 397, 581
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 496
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 2 cut(s) 58, 519
MaeI CTAG 5 cut(s) 560, 614, 725, 741, 867
MaeIII GTNAC 1 cut(s) 533
MalI GATC 4 cut(s) 43, 336, 399, 583
MboI GATC 4 cut(s) 41, 334, 397, 581
MboII GAAGA 8 cut(s) 45, 167, 204, 308, 576, 780, 833, 935
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 3 cut(s) 470, 526, 856
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 156, 430
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 676, 686, 778
MnlI CCTC 5 cut(s) 10, 40, 119, 262, 536
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 512
MreI CGCCGGCG 1 cut(s) 164
MroNI GCCGGC 1 cut(s) 164
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 153, 204, 441, 930
MslI CAYNNNNRTG 2 cut(s) 342, 849
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 2 cut(s) 774, 849
MvaI CCWGG 2 cut(s) 774, 849
MwoI GCNNNNNNNGC 2 cut(s) 691, 746
NaeI GCCGGC 1 cut(s) 166
NcoI CCATGG 1 cut(s) 588
NdeI CATATG 1 cut(s) 506
NdeII GATC 4 cut(s) 41, 334, 397, 581
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 1 cut(s) 592
NlaIV GGNNCC 2 cut(s) 468, 853
NsiI ATGCAT 1 cut(s) 512
OliI CACNNNNGTG 1 cut(s) 342
PaqCI CACCTGC 1 cut(s) 112
PceI AGGCCT 1 cut(s) 745
PciSI GCTCTTC 1 cut(s) 28
PdiI GCCGGC 1 cut(s) 166
PfeI GAWTC 3 cut(s) 192, 714, 752
PkrI GCNGC 1 cut(s) 696
PleI GAGTC 3 cut(s) 675, 685, 777
PpsI GAGTC 3 cut(s) 675, 685, 777
PshAI GACNNNNGTC 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 772, 847
PspFI CCCAGC 1 cut(s) 90
PspGI CCWGG 2 cut(s) 772, 847
PspN4I GGNNCC 2 cut(s) 468, 853
PspOMI GGGCCC 1 cut(s) 466
PspPI GGNCC 3 cut(s) 128, 466, 467
PstNI CAGNNNCTG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 581
RseI CAYNNNNRTG 2 cut(s) 342, 849
SapI GCTCTTC 1 cut(s) 28
SaqAI TTAA 4 cut(s) 153, 204, 441, 930
SatI GCNGC 1 cut(s) 695
Sau3AI GATC 4 cut(s) 41, 334, 397, 581
Sau96I GGNCC 3 cut(s) 128, 466, 467
SchI GAGTC 3 cut(s) 676, 686, 778
ScrFI CCNGG 2 cut(s) 774, 849
SduI GDGCHC 3 cut(s) 470, 526, 856
SfaNI GCATC 2 cut(s) 58, 519
SfcI CTRYAG 3 cut(s) 340, 538, 642
SgrAI CRCCGGYG 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 342, 849
SmlI CTYRAG 2 cut(s) 179, 440
SmoI CTYRAG 2 cut(s) 179, 440
Sse9I AATT 2 cut(s) 156, 430
SseBI AGGCCT 1 cut(s) 745
SsiI CCGC 3 cut(s) 162, 168, 488
SspMI CTAG 5 cut(s) 560, 614, 725, 741, 867
StuI AGGCCT 1 cut(s) 745
StyD4I CCNGG 2 cut(s) 772, 847
StyI CCWWGG 4 cut(s) 147, 381, 470, 588
TaaI ACNGT 5 cut(s) 344, 554, 643, 786, 917
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 156, 430
TfiI GAWTC 3 cut(s) 192, 714, 752
Tru1I TTAA 4 cut(s) 153, 204, 441, 930
Tru9I TTAA 4 cut(s) 153, 204, 441, 930
TscAI CASTG 3 cut(s) 349, 354, 922
TseI GCWGC 1 cut(s) 694
TspDTI ATGAA 2 cut(s) 599, 833
TspRI CASTG 3 cut(s) 349, 354, 922
Vha464I CTTAAG 1 cut(s) 440
XapI RAATTY 2 cut(s) 156, 430
XbaI TCTAGA 1 cut(s) 559
XmiI GTMKAC 2 cut(s) 573, 645
XspI CTAG 5 cut(s) 560, 614, 725, 741, 867
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.