AT1G06060

CT11-RanBPM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012908
Physical Location & Seq
Forward (+)
1832941 .. 1834861
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06060.1

Sequence Viewer

Length: 642 bp
ATGGATCCTCGTCAATTCGAACACACCGTTGTTGCTGATAATGATATTCACAGCATTGTTATGTCATATCTTCTGCACAACTGCTTCAACGAAACTGCGGACTCACTTGCTTCTTCCACTGGAGTTAAGCAGCCTGCAATTGATCGTGATAACATGGAGAGAAGAAAACAAATAATACATTTTATACTGGAGAGGAAGGCGTTGAAGGCTTTTGAACTAACTGAACAACTAGCACAAGACTTGCTTGAGAAAAACAAGGATTTGCAATTCGATCTTCTATGCCTTCATTTTGTGGAGCTAATCTGTGCTGGGAACTGCACCGAAGCTCTCAAATTTGGTAAGACAAGATTGGCTCCTTTTGGGAAGGTCAAAAAATATGTAGAAAAGCTTGAAGACGTAATGGCATTGCTCGCTTATGAAGACCCTGAGAAATCCCCAATGTTCCATCTTTTGAGCTCTGAATACCGCCAACAAGTTGCTGATAATCTGAACCGCACAATTCTTGAACACACAAACCACCCGAGCTACACACCAATGGAAAGGATCATACAACAGGTGACAGTTGTGAGACAATACTTGACTGAGGAGAATGGCAAAGATGCGTTTCCTCCATTCTCTCTGAAGGATTCTCTCAAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

213

Amino Acids

24.56

Weight (kDa)

5.77

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 52 - 191 4.2e-35 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06060 AT1G06060
fragaria_vesca FvH4_2g38860
malus_domestica MD08G1023000.v1.1 MD15G1020700.v1.1
prunus_persica Prupe.1G372300_v2.0.a1 Prupe.1G372300_v2.0.a1
pyrus_communis pycom08g01800 pycom15g01700
rosa_chinensis RchiOBHm_Chr6g0301961
rosa_laevigata RLG00000011207
rosa_multiflora Rmu_co8505221.1_g000001
rosa_roxburghii Rroxscaffold_7G00166240
rosa_rugosa Rorug06G0310600 Rorug06G0310600
rosa_samantha Rh6AG423000 Rh6BG429800
rosa_wichuraiana Rw6G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 98, 466, 493
AclWI GGATC 2 cut(s) 12, 551
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 641
AgsI TTSAA 5 cut(s) 88, 205, 215, 392, 506
AluBI AGCT 5 cut(s) 298, 326, 388, 456, 525
AluI AGCT 5 cut(s) 298, 326, 388, 456, 525
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 1 cut(s) 562
AlwI GGATC 2 cut(s) 12, 551
Ama87I CYCGRG 1 cut(s) 520
ApeKI GCWGC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 568
AsuII TTCGAA 1 cut(s) 18
AvaI CYCGRG 1 cut(s) 520
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 458
BbsI GAAGAC 2 cut(s) 399, 426
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 562
BfaI CTAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
BmeT110I CYCGRG 1 cut(s) 520
BmiI GGNNCC 2 cut(s) 6, 354
BmsI GCATC 1 cut(s) 589
BpiI GAAGAC 2 cut(s) 399, 426
BpmI CTGGAG 2 cut(s) 141, 209
Bpu14I TTCGAA 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 266
Bse1I ACTGG 2 cut(s) 124, 192
Bse3DI GCAATG 1 cut(s) 404
BseMI GCAATG 1 cut(s) 404
BseMII CTCAG 2 cut(s) 417, 573
BseNI ACTGG 2 cut(s) 124, 192
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 308
BsgI GTGCAG 2 cut(s) 59, 301
BsiHKAI GWGCWC 1 cut(s) 458
BsiHKCI CYCGRG 1 cut(s) 520
BsmAI GTCTC 1 cut(s) 562
BsoBI CYCGRG 1 cut(s) 520
Bsp119I TTCGAA 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 4 cut(s) 4, 142, 271, 543
BspACI CCGC 3 cut(s) 98, 466, 493
BspCNI CTCAG 2 cut(s) 418, 574
BspLI GGNNCC 2 cut(s) 6, 354
BspPI GGATC 2 cut(s) 12, 551
BspT104I TTCGAA 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 404
BsrI ACTGG 2 cut(s) 124, 192
BssMI GATC 4 cut(s) 4, 142, 271, 543
Bst4CI ACNGT 2 cut(s) 28, 562
BstBI TTCGAA 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 135, 411
BstDEI CTNAG 2 cut(s) 426, 582
BstKTI GATC 4 cut(s) 7, 145, 274, 546
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 4 cut(s) 4, 142, 271, 543
BstMWI GCNNNNNNNGC 2 cut(s) 206, 410
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 2 cut(s) 399, 426
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 135, 411
CviAII CATG 1 cut(s) 154
CviJI RGCY 9 cut(s) 133, 209, 298, 326, 353, 388, 456, 525, 639
CviKI_1 RGCY 9 cut(s) 133, 209, 298, 326, 353, 388, 456, 525, 639
DdeI CTNAG 2 cut(s) 426, 582
DpnI GATC 4 cut(s) 6, 144, 273, 545
DpnII GATC 4 cut(s) 4, 142, 271, 543
Ecl136II GAGCTC 1 cut(s) 456
Eco24I GRGCYC 1 cut(s) 458
Eco53kI GAGCTC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 641
Eco88I CYCGRG 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 456
EcoT38I GRGCYC 1 cut(s) 458
FaeI CATG 1 cut(s) 157
FaiI YATR 8 cut(s) 62, 67, 155, 185, 280, 378, 417, 548
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 131
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 2 cut(s) 141, 209
Hin1II CATG 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 2 cut(s) 101, 626
HphI GGTGA 1 cut(s) 568
Hpy188I TCNGA 3 cut(s) 460, 489, 621
Hpy188III TCNNGA 2 cut(s) 146, 503
HpyAV CCTTC 5 cut(s) 190, 199, 293, 358, 616
HpyCH4III ACNGT 2 cut(s) 28, 562
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 4 cut(s) 76, 137, 265, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 410
HpyF3I CTNAG 2 cut(s) 426, 582
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 4 cut(s) 4, 142, 271, 543
LmnI GCTCC 2 cut(s) 295, 358
LpnPI CCDG 6 cut(s) 105, 147, 173, 294, 438, 539
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 589
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 556
MalI GATC 4 cut(s) 6, 144, 273, 545
MboI GATC 4 cut(s) 4, 142, 271, 543
MboII GAAGA 6 cut(s) 62, 105, 174, 266, 404, 431
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 5 cut(s) 14, 138, 266, 332, 498
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 4 cut(s) 18, 186, 577, 618
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 59, 533
MunI CAATTG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 206, 410
NdeII GATC 4 cut(s) 4, 142, 271, 543
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 2 cut(s) 6, 354
NmuCI GTSAC 1 cut(s) 556
NspV TTCGAA 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 1 cut(s) 626
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 6, 354
PsuI RGATCY 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 59, 533
SacI GAGCTC 1 cut(s) 458
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 4 cut(s) 4, 142, 271, 543
SchI GAGTC 1 cut(s) 95
SduI GDGCHC 1 cut(s) 458
SetI ASST 8 cut(s) 300, 328, 369, 390, 399, 458, 527, 558
SfaNI GCATC 1 cut(s) 589
SfuI TTCGAA 1 cut(s) 18
SmiMI CAYNNNNRTG 2 cut(s) 59, 533
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 5 cut(s) 14, 138, 266, 332, 498
SsiI CCGC 3 cut(s) 98, 466, 493
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 458
TaaI ACNGT 2 cut(s) 28, 562
TaiI ACGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 18, 270
TasI AATT 5 cut(s) 14, 138, 266, 332, 498
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 2 cut(s) 275, 432
TspRI CASTG 1 cut(s) 124
XapI RAATTY 1 cut(s) 332
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.