Rorug06G0310600

Glucose-induced degradation protein 8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012908
Physical Location & Seq
Reverse (-)
46183151 .. 46185979
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0310600.1

Sequence Viewer

Length: 957 bp
ATGGGTTCGTTGAGCGACGACGGCGCCACCGCCACCGGGTTCGAGTCGTCACCGGAGATGGTGAAGTTTCTCTGCGACAGATTGCTGGACCCGGCGCAGCCCATATCGGAGCGGTTCAGAGCCTTGTTCTCTCTCCGCAACCTCAAAGGCCCTGCCCCGCGCAACGCCCTTATTACCGCAACAAGGGATTCTTCCAACTTGTTGGCACATGAGGCTGCATTTGCGTTGGGTCAAATGCAAGACGCGGAGGCAATTCCTGCTTTGATAGCGGTTCTCAATGATTTCTCTCTGCATCCCATTGTTCGTCATGAGGCAGCAGAAGCTCTTGGTGCAATTGGTTTGGAGAGCAATATTCCTCTTTTAAAGAATAGCCTGGTTTCAGATCCAGCTCAGGAGGTAAAAGAGACTTGTGAGTTGGCTCTTAATCGAATTGAGCAGTTGAAGAATGATAGTAGTCAATCCATGGATAAAAAATCACCTTTTATGTCTGTGGATCCGGCTGCACCGGCTACTTCTGGCTCTTCTGTAAATCAGCTAAGGGAAGCTCTTCTGGATGAAAAAAGGAGTATGTATGAGCGGTATTCAGCTCTCTTTGCACTTCGGAATGATGGTGGTGATGAAGCTGTTACTGCTATAATTGATTCCTTGGGTTCCCAAAGTGCTCTCTTGCGACACGAGGTTGCTTATGTGTTGGGCCAATTACAAGATAAAGCTGCTTCAGCTGCTCTTTCCAACATACTTATGGATAAAAATGAGCACCCAATGGTTAGACATGAAGCTGCTGAAGCTCTTGGTTCCATTGCAGATGACCAAAGTGTATCACTTCTCAAGGAATTTGCAATGGATCCTGAGCCTATCGTGTCTCAGAGCTGTGAAGTTGCTCTAAGCATGCTTGAGTATGAAGGATCGGGCAAATCGTTTGAGTACCTATTCATGCAAGCTCCTCAAGTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

318

Amino Acids

34.34

Weight (kDa)

4.64

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_2 PF13646 22 - 94 1.9e-06 HEAT repeats
HEAT_2 PF13646 56 - 141 1.4e-15 HEAT repeats
HEAT_PBS PF03130 69 - 94 1.8e-06 PBS lyase HEAT-like repeat
HEAT_2 PF13646 218 - 295 7.2e-12 HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06060 AT1G06060
fragaria_vesca FvH4_2g38860
malus_domestica MD08G1023000.v1.1 MD15G1020700.v1.1
prunus_persica Prupe.1G372300_v2.0.a1 Prupe.1G372300_v2.0.a1
pyrus_communis pycom08g01800 pycom15g01700
rosa_chinensis RchiOBHm_Chr6g0301961
rosa_laevigata RLG00000011207
rosa_multiflora Rmu_co8505221.1_g000001
rosa_roxburghii Rroxscaffold_7G00166240
rosa_rugosa Rorug06G0310600 Rorug06G0310600
rosa_samantha Rh6AG423000 Rh6BG429800
rosa_wichuraiana Rw6G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccBSI CCGCTC 2 cut(s) 112, 577
AccII CGCG 2 cut(s) 160, 245
AciI CCGC 8 cut(s) 30, 112, 136, 158, 177, 245, 269, 577
AclWI GGATC 6 cut(s) 377, 488, 501, 839, 852, 913
AcsI RAATTY 1 cut(s) 833
AcuI CTGAAG 2 cut(s) 702, 804
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 926, 951
AfiI CCNNNNNNNGG 2 cut(s) 36, 183
AgsI TTSAA 1 cut(s) 442
AjnI CCWGG 1 cut(s) 372
Alw21I GWGCWC 2 cut(s) 664, 759
Alw26I GTCTC 2 cut(s) 398, 867
AlwI GGATC 6 cut(s) 377, 488, 501, 839, 852, 913
AoxI GGCC 2 cut(s) 148, 694
ApeKI GCWGC 7 cut(s) 97, 215, 314, 500, 713, 722, 779
ApoI RAATTY 1 cut(s) 833
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 3 cut(s) 26, 97, 162
AspS9I GGNCC 3 cut(s) 88, 149, 694
AsuC2I CCSGG 2 cut(s) 37, 92
AsuHPI GGTGA 4 cut(s) 42, 73, 468, 626
AvaII GGWCC 1 cut(s) 88
BamHI GGATCC 2 cut(s) 493, 844
BanI GGYRCC 1 cut(s) 23
BauI CACGAG 1 cut(s) 674
Bbv12I GWGCWC 2 cut(s) 664, 759
BbvI GCAGC 7 cut(s) 109, 202, 326, 487, 700, 709, 766
BccI CCATC 2 cut(s) 52, 602
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 374
BcnI CCSGG 2 cut(s) 37, 92
BcoDI GTCTC 2 cut(s) 398, 867
BfoI RGCGCY 1 cut(s) 27
BisI GCNGC 7 cut(s) 98, 216, 315, 501, 714, 723, 780
BlsI GCNGC 7 cut(s) 99, 217, 316, 502, 715, 724, 781
Bme1390I CCNGG 3 cut(s) 37, 92, 374
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 3 cut(s) 88, 149, 694
BmiI GGNNCC 6 cut(s) 25, 90, 495, 652, 796, 846
BmrFI CCNGG 3 cut(s) 37, 92, 374
BmsI GCATC 1 cut(s) 301
Bpu10I CCTNAGC 3 cut(s) 390, 536, 849
BpuEI CTTGAG 3 cut(s) 812, 914, 930
BpuMI CCSGG 2 cut(s) 37, 92
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 462, 645
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 183
Bse118I RCCGGY 1 cut(s) 505
Bse3DI GCAATG 2 cut(s) 798, 846
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 2 cut(s) 462, 645
BseGI GGATG 2 cut(s) 292, 559
BseLI CCNNNNNNNGG 2 cut(s) 36, 183
BseMI GCAATG 2 cut(s) 798, 846
BseMII CTCAG 3 cut(s) 404, 840, 878
BseRI GAGGAG 1 cut(s) 933
BseXI GCAGC 7 cut(s) 109, 202, 326, 487, 700, 709, 766
BsgI GTGCAG 1 cut(s) 486
Bsh1236I CGCG 2 cut(s) 160, 245
BshFI GGCC 2 cut(s) 150, 696
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 664, 759
BsiSI CCGG 5 cut(s) 36, 53, 92, 497, 506
BslI CCNNNNNNNGG 2 cut(s) 36, 183
BsmAI GTCTC 2 cut(s) 398, 867
BsnI GGCC 2 cut(s) 150, 696
Bsp1286I GDGCHC 2 cut(s) 664, 759
Bsp143I GATC 4 cut(s) 382, 493, 844, 905
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 8 cut(s) 30, 112, 136, 158, 177, 245, 269, 577
BspANI GGCC 2 cut(s) 150, 696
BspCNI CTCAG 3 cut(s) 403, 841, 877
BspFNI CGCG 2 cut(s) 160, 245
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 6 cut(s) 25, 90, 495, 652, 796, 846
BspPI GGATC 6 cut(s) 377, 488, 501, 839, 852, 913
BspQI GCTCTTC 2 cut(s) 526, 552
BspT107I GGYRCC 1 cut(s) 23
BsrBI CCGCTC 2 cut(s) 112, 577
BsrDI GCAATG 2 cut(s) 798, 846
BsrFI RCCGGY 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 505
BssECI CCNNGG 2 cut(s) 462, 645
BssMI GATC 4 cut(s) 382, 493, 844, 905
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 1 cut(s) 674
BssT1I CCWWGG 2 cut(s) 462, 645
Bst2BI CACGAG 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 374
Bst6I CTCTTC 2 cut(s) 526, 552
BstACI GRCGYC 1 cut(s) 24
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 890, 939
BstDEI CTNAG 5 cut(s) 390, 536, 849, 864, 884
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 292, 559
BstFNI CGCG 2 cut(s) 160, 245
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 3 cut(s) 26, 97, 162
BstKTI GATC 4 cut(s) 385, 496, 847, 908
BstMAI GTCTC 2 cut(s) 398, 867
BstMBI GATC 4 cut(s) 382, 493, 844, 905
BstNI CCWGG 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 892
BstSCI CCNGG 3 cut(s) 35, 90, 372
BstUI CGCG 2 cut(s) 160, 245
BstV1I GCAGC 7 cut(s) 109, 202, 326, 487, 700, 709, 766
BstX2I RGATCY 3 cut(s) 382, 493, 844
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 3 cut(s) 382, 493, 844
BsuRI GGCC 2 cut(s) 150, 696
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 2 cut(s) 292, 559
Cac8I GCNNGC 2 cut(s) 890, 939
CciI TCATGA 1 cut(s) 307
CfoI GCGC 3 cut(s) 26, 97, 162
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 3 cut(s) 88, 149, 694
CseI GACGC 1 cut(s) 251
Csp6I GTAC 2 cut(s) 925, 950
CviAII CATG 6 cut(s) 209, 308, 463, 773, 889, 934
CviQI GTAC 2 cut(s) 925, 950
DdeI CTNAG 5 cut(s) 390, 536, 849, 864, 884
DinI GGCGCC 1 cut(s) 25
DpnI GATC 4 cut(s) 384, 495, 846, 907
DpnII GATC 4 cut(s) 382, 493, 844, 905
DraI TTTAAA 1 cut(s) 363
Eam1104I CTCTTC 2 cut(s) 526, 552
EarI CTCTTC 2 cut(s) 526, 552
Eco130I CCWWGG 2 cut(s) 462, 645
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 702, 804
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 462, 645
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 2 cut(s) 462, 645
FaeI CATG 6 cut(s) 212, 311, 466, 776, 892, 937
FalI AAGNNNNNCTT 2 cut(s) 175, 207
FatI CATG 6 cut(s) 208, 307, 462, 772, 888, 933
FauI CCCGC 1 cut(s) 165
Fnu4HI GCNGC 7 cut(s) 98, 216, 315, 501, 714, 723, 780
FokI GGATG 2 cut(s) 279, 566
Fsp4HI GCNGC 7 cut(s) 98, 216, 315, 501, 714, 723, 780
GlaI GCGC 3 cut(s) 25, 96, 161
GluI GCNGC 7 cut(s) 98, 216, 315, 501, 714, 723, 780
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 2 cut(s) 150, 696
HapII CCGG 5 cut(s) 36, 53, 92, 497, 506
HgaI GACGC 1 cut(s) 251
HhaI GCGC 3 cut(s) 26, 97, 162
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 6 cut(s) 212, 311, 466, 776, 892, 937
Hin6I GCGC 3 cut(s) 24, 95, 160
HinP1I GCGC 3 cut(s) 24, 95, 160
HinfI GANTC 3 cut(s) 44, 188, 641
HpaII CCGG 5 cut(s) 36, 53, 92, 497, 506
HphI GGTGA 4 cut(s) 42, 73, 468, 626
Hpy188I TCNGA 5 cut(s) 109, 119, 382, 603, 867
Hpy188III TCNNGA 4 cut(s) 308, 392, 551, 848
Hpy99I CGWCG 2 cut(s) 20, 23
HpyAV CCTTC 1 cut(s) 896
HpyCH4V TGCA 9 cut(s) 218, 238, 292, 332, 503, 596, 803, 839, 937
HpyF3I CTNAG 5 cut(s) 390, 536, 849, 864, 884
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 6 cut(s) 212, 311, 466, 776, 892, 937
HspAI GCGC 3 cut(s) 24, 95, 160
KasI GGCGCC 1 cut(s) 23
Kzo9I GATC 4 cut(s) 382, 493, 844, 905
LguI GCTCTTC 2 cut(s) 526, 552
LmnI GCTCC 2 cut(s) 109, 946
Lsp1109I GCAGC 7 cut(s) 109, 202, 326, 487, 700, 709, 766
LweI GCATC 1 cut(s) 301
MaeIII GTNAC 2 cut(s) 48, 625
MalI GATC 4 cut(s) 384, 495, 846, 907
MbiI CCGCTC 2 cut(s) 112, 577
MboI GATC 4 cut(s) 382, 493, 844, 905
MboII GAAGA 4 cut(s) 183, 454, 513, 539
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 3 cut(s) 382, 493, 844
MhlI GDGCHC 2 cut(s) 664, 759
MluCI AATT 6 cut(s) 252, 333, 429, 636, 698, 833
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 219, 756
MnlI CCTC 8 cut(s) 152, 205, 241, 304, 366, 388, 670, 954
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 2 cut(s) 362, 423
MslI CAYNNNNRTG 1 cut(s) 740
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 5 cut(s) 36, 53, 92, 497, 506
MspR9I CCNGG 3 cut(s) 37, 92, 374
MunI CAATTG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 374
MvnI CGCG 2 cut(s) 160, 245
NarI GGCGCC 1 cut(s) 24
NciI CCSGG 2 cut(s) 37, 92
NcoI CCATGG 1 cut(s) 462
NdeII GATC 4 cut(s) 382, 493, 844, 905
NlaIII CATG 6 cut(s) 212, 311, 466, 776, 892, 937
NlaIV GGNNCC 6 cut(s) 25, 90, 495, 652, 796, 846
NmuCI GTSAC 1 cut(s) 48
NspI RCATGY 1 cut(s) 892
PaeI GCATGC 1 cut(s) 892
PagI TCATGA 1 cut(s) 307
PciSI GCTCTTC 2 cut(s) 526, 552
PcsI WCGNNNNNNNCGW 1 cut(s) 914
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 2 cut(s) 188, 641
PkrI GCNGC 7 cut(s) 99, 217, 316, 502, 715, 724, 781
PleI GAGTC 1 cut(s) 52
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 6 cut(s) 25, 90, 495, 652, 796, 846
PspPI GGNCC 3 cut(s) 88, 149, 694
PsuI RGATCY 3 cut(s) 382, 493, 844
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 2 cut(s) 926, 951
RsaNI GTAC 2 cut(s) 925, 950
RseI CAYNNNNRTG 1 cut(s) 740
SapI GCTCTTC 2 cut(s) 526, 552
SaqAI TTAA 2 cut(s) 362, 423
SatI GCNGC 7 cut(s) 98, 216, 315, 501, 714, 723, 780
Sau3AI GATC 4 cut(s) 382, 493, 844, 905
Sau96I GGNCC 3 cut(s) 88, 149, 694
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 3 cut(s) 37, 92, 374
SduI GDGCHC 2 cut(s) 664, 759
SfaNI GCATC 1 cut(s) 301
SfoI GGCGCC 1 cut(s) 25
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 3 cut(s) 827, 893, 945
SmoI CTYRAG 3 cut(s) 827, 893, 945
SphI GCATGC 1 cut(s) 892
Sse9I AATT 6 cut(s) 252, 333, 429, 636, 698, 833
SsiI CCGC 8 cut(s) 30, 112, 136, 158, 177, 245, 269, 577
SspDI GGCGCC 1 cut(s) 23
SspI AATATT 1 cut(s) 352
StyD4I CCNGG 3 cut(s) 35, 90, 372
StyI CCWWGG 2 cut(s) 462, 645
TaqI TCGA 2 cut(s) 42, 427
TasI AATT 6 cut(s) 252, 333, 429, 636, 698, 833
TatI WGTACW 1 cut(s) 949
TfiI GAWTC 2 cut(s) 188, 641
Tru1I TTAA 2 cut(s) 362, 423
Tru9I TTAA 2 cut(s) 362, 423
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 7 cut(s) 97, 215, 314, 500, 713, 722, 779
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 5 cut(s) 570, 633, 789, 915, 922
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 833
XceI RCATGY 1 cut(s) 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 739
XmnI GAANNNNTTC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.