Rh6BG429800

Glucose-induced degradation protein 8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012908
Physical Location & Seq
Forward (+)
64977069 .. 64979732
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG429800.1

Sequence Viewer

Length: 519 bp
ATGAAGCAGCCTGCCGATTGTATTGATGATATGGAGAAAAGGAAAAGGATTTATCATTGTGCAGTGGAGGGGAATGCTCTTAAGGCGATTGAACTGACAGAACAGCTGGCGAATGACTTACTGGAGAAAAATAAAGACTTGCATTTTGATCTTCTCAGCCTTCACTTTGTTGAACTTGTTTGCTCTAGAAAATGCACAGAAGCTTTGGAATTTGCCCAGACCAATTTGACCCCCTTTGGGAAGGTGGAAAAATACGTTGAAAAACTCGAAGACTTCATGGCTCTTCTTGCTTACGAAGAGCCGGAGAAATCCCCAATGTTTCATTTGCTTAGCAAGGATTATCGGCAGCAAGTTGCAGATAGTTTGAATCGAGCAATTCTAGCACATTCAAACCTTCCCAGTTATACAGCAATGGAAAGGCTAATACAACAGACAATAGCAGTTAAGCAATTTATAAGTGAAGACAATGCCAAGAATGGGTCACAACCATTTTCTTTGAAGGATTTTCTTAGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

172

Amino Acids

19.73

Weight (kDa)

5.4

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 11 - 149 1.4e-33 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06060 AT1G06060
fragaria_vesca FvH4_2g38860
malus_domestica MD08G1023000.v1.1 MD15G1020700.v1.1
prunus_persica Prupe.1G372300_v2.0.a1 Prupe.1G372300_v2.0.a1
pyrus_communis pycom08g01800 pycom15g01700
rosa_chinensis RchiOBHm_Chr6g0301961
rosa_laevigata RLG00000011207
rosa_multiflora Rmu_co8505221.1_g000001
rosa_roxburghii Rroxscaffold_7G00166240
rosa_rugosa Rorug06G0310600 Rorug06G0310600
rosa_samantha Rh6AG423000 Rh6BG429800
rosa_wichuraiana Rw6G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 455
AcsI RAATTY 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 237, 477
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 6 cut(s) 92, 173, 260, 367, 390, 499
AluBI AGCT 3 cut(s) 106, 203, 516
AluI AGCT 3 cut(s) 106, 203, 516
ApeKI GCWGC 3 cut(s) 7, 346, 513
ApoI RAATTY 1 cut(s) 209
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
BbsI GAAGAC 2 cut(s) 276, 468
BbvI GCAGC 2 cut(s) 19, 358
BfaI CTAG 2 cut(s) 186, 380
BfrI CTTAAG 1 cut(s) 80
BisI GCNGC 3 cut(s) 8, 347, 514
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 3 cut(s) 9, 348, 515
BmrI ACTGGG 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 393
BpiI GAAGAC 2 cut(s) 276, 468
BpmI CTGGAG 1 cut(s) 143
Bpu1102I GCTNAGC 1 cut(s) 329
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 477
Bse1I ACTGG 2 cut(s) 126, 399
Bse3DI GCAATG 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 237, 477
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 2 cut(s) 126, 399
BseXI GCAGC 2 cut(s) 19, 358
BsgI GTGCAG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 237, 477
BsmI GAATGC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 148
Bsp1720I GCTNAGC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 168
BspQI GCTCTTC 2 cut(s) 288, 291
BspTI CTTAAG 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 2 cut(s) 126, 399
BssMI GATC 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 288, 291
BstAFI CTTAAG 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 12, 108
BstDEI CTNAG 3 cut(s) 155, 329, 509
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 83, 287, 380
BstV1I GCAGC 2 cut(s) 19, 358
BstV2I GAAGAC 2 cut(s) 276, 468
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 12, 108
CviAII CATG 1 cut(s) 277
CviJI RGCY 8 cut(s) 10, 106, 159, 203, 281, 301, 421, 516
CviKI_1 RGCY 8 cut(s) 10, 106, 159, 203, 281, 301, 421, 516
DdeI CTNAG 3 cut(s) 155, 329, 509
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 2 cut(s) 288, 291
EarI CTCTTC 2 cut(s) 288, 291
FaeI CATG 1 cut(s) 280
FaiI YATR 4 cut(s) 32, 278, 405, 455
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 8, 347, 514
Fsp4HI GCNGC 3 cut(s) 8, 347, 514
FspBI CTAG 2 cut(s) 186, 380
GluI GCNGC 3 cut(s) 8, 347, 514
GsuI CTGGAG 1 cut(s) 143
HapII CCGG 1 cut(s) 302
Hin1II CATG 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 1 cut(s) 367
HpaII CCGG 1 cut(s) 302
Hpy188III TCNNGA 1 cut(s) 186
HpyAV CCTTC 4 cut(s) 170, 235, 404, 493
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 4 cut(s) 62, 142, 195, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 287, 380
HpyF3I CTNAG 3 cut(s) 155, 329, 509
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 1 cut(s) 280
Kzo9I GATC 1 cut(s) 148
LguI GCTCTTC 2 cut(s) 288, 291
LpnPI CCDG 6 cut(s) 24, 92, 107, 230, 315, 412
Lsp1109I GCAGC 2 cut(s) 19, 358
MaeI CTAG 2 cut(s) 186, 380
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 480
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 5 cut(s) 143, 275, 281, 308, 473
MluCI AATT 4 cut(s) 209, 223, 375, 449
MnlI CCTC 1 cut(s) 61
MseI TTAA 2 cut(s) 81, 444
MspA1I CMGCKG 1 cut(s) 106
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 79
MwoI GCNNNNNNNGC 3 cut(s) 83, 287, 380
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 480
PciSI GCTCTTC 2 cut(s) 288, 291
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 3 cut(s) 9, 348, 515
PsiI TTATAA 1 cut(s) 455
PvuII CAGCTG 1 cut(s) 106
SapI GCTCTTC 2 cut(s) 288, 291
SaqAI TTAA 2 cut(s) 81, 444
SatI GCNGC 3 cut(s) 8, 347, 514
Sau3AI GATC 1 cut(s) 148
SetI ASST 6 cut(s) 108, 205, 246, 258, 396, 518
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 4 cut(s) 209, 223, 375, 449
SspMI CTAG 2 cut(s) 186, 380
TaiI ACGT 1 cut(s) 258
TaqI TCGA 2 cut(s) 267, 370
TasI AATT 4 cut(s) 209, 223, 375, 449
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 2 cut(s) 81, 444
Tru9I TTAA 2 cut(s) 81, 444
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 480
TseI GCWGC 3 cut(s) 7, 346, 513
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 3 cut(s) 17, 265, 311
TspRI CASTG 1 cut(s) 69
Vha464I CTTAAG 1 cut(s) 80
XapI RAATTY 1 cut(s) 209
XbaI TCTAGA 1 cut(s) 185
XspI CTAG 2 cut(s) 186, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.