Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012908

Physical Location & Seq

Genomic Coordinates Reverse (-)

1340468 .. 1342311

Gene Structure 1844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGACGTCGATCCTCGTCACTTCAATCAAGTTGCTATCAATGACAATGATATCAACAGTATTGTTCTGTCATACCTTGTGCATAACTGCTACAAAGAAACTGTAGAGTCGTTTGTTGCTTCGACGGGGACGAAGCAGCCTGCCGACTGCATTGAGGATATGGAGAAAAGAAAAAGGATTTTTCAATGTGCAGTGGAGGGGAATGCTCAGAAGGCGATTGAACTGACGGAAGAGCTGGCACCTGAGTTGCTGGAGAAAAACAAAGACTTGCATTTTGACCTTCTGAGCCTGCACTTTGTTGAACTTGTTTGCGCTAAAAAATGCACAGAAGCTTTGGAATTCGCCCAGAACAAGTTGGGCCCCTTTGGGAAGGTGGACAAATACGTTACAAAGCTTGAAGATTTCATGGCTCTGCTTGCTTACAATGAACCGGAGAAGTCTCCTATGTTTCATTTGCTTAGCTTGGACTATCGGCAGCAAGTTGCAGATAGTTTGAATCAAGCAATTCTTGGGCATTCAAACCTGCCCGATTACTCTGCATTGGAAAGGCTAATACAACAGACAACAGTAGTAAGACAATATATGAGCGAAGATAATGTCAAGAATGGGAATCCTCCATTTTCTTTGAAGGATTTTATTAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH

Protein Analysis

216

Amino Acids

24.53

Weight (kDa)

5.08

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06060 AT1G06060
fragaria_vesca	FvH4_2g38860
malus_domestica	MD08G1023000.v1.1 MD15G1020700.v1.1
prunus_persica	Prupe.1G372300_v2.0.a1 Prupe.1G372300_v2.0.a1
pyrus_communis	pycom08g01800 pycom15g01700
rosa_chinensis	RchiOBHm_Chr6g0301961
rosa_laevigata	RLG00000011207
rosa_multiflora	Rmu_co8505221.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166240
rosa_rugosa	Rorug06G0310600 Rorug06G0310600
rosa_samantha	Rh6AG423000 Rh6BG429800
rosa_wichuraiana	Rw6G036650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
Acc36I	ACCTGC	1 cut(s)	531
AccB1I	GGYRCC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	6
AgsI	TTSAA	8 cut(s)	25, 185, 221, 302, 398, 496, 519, 628
AluBI	AGCT	5 cut(s)	235, 332, 394, 462, 645
AluI	AGCT	5 cut(s)	235, 332, 394, 462, 645
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	1 cut(s)	5
AoxI	GGCC	1 cut(s)	358
ApaI	GGGCCC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	136, 475
ApoI	RAATTY	1 cut(s)	338
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 582, 614
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	358, 359
BaeGI	GKGCMC	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	148, 487
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BcoDI	GTCTC	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	531
BisI	GCNGC	2 cut(s)	137, 476
BlpI	GCTNAGC	1 cut(s)	458
BlsI	GCNGC	2 cut(s)	138, 477
BmgT120I	GGNCC	2 cut(s)	358, 359
BmiI	GGNNCC	3 cut(s)	240, 360, 361
BpmI	CTGGAG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	430
BseMII	CTCAG	3 cut(s)	221, 234, 275
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	148, 487
BsgI	GTGCAG	2 cut(s)	210, 275
BshFI	GGCC	1 cut(s)	360
BshNI	GGYRCC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	142
BsmI	GAATGC	2 cut(s)	208, 514
BsnI	GGCC	1 cut(s)	360
Bsp120I	GGGCCC	1 cut(s)	358
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	10
Bsp1720I	GCTNAGC	1 cut(s)	458
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	3 cut(s)	220, 235, 276
BspLI	GGNNCC	3 cut(s)	240, 360, 361
BspMI	ACCTGC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	5
BspQI	GCTCTTC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	238
BssMI	GATC	1 cut(s)	10
BssNI	GRCGYC	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	59, 103, 568
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	4 cut(s)	141, 237, 290, 417
BstDEI	CTNAG	4 cut(s)	207, 243, 284, 458
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 416
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	148, 487
BsuRI	GGCC	1 cut(s)	360
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	4 cut(s)	141, 237, 290, 417
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	358, 359
CviAII	CATG	1 cut(s)	406
DdeI	CTNAG	4 cut(s)	207, 243, 284, 458
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	338
EcoRV	GATATC	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	362
FaeI	CATG	1 cut(s)	409
FaiI	YATR	7 cut(s)	73, 84, 161, 407, 446, 582, 584
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	1 cut(s)	405
Fnu4HI	GCNGC	2 cut(s)	137, 476
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	2 cut(s)	137, 476
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	2 cut(s)	137, 476
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	409
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HindIII	AAGCTT	2 cut(s)	330, 392
HinfI	GANTC	3 cut(s)	107, 496, 610
HpaII	CCGG	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	210, 285
Hpy188III	TCNNGA	1 cut(s)	601
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	2 cut(s)	11, 127
HpyAV	CCTTC	4 cut(s)	205, 290, 364, 622
HpyCH4III	ACNGT	3 cut(s)	59, 103, 568
HpyCH4IV	ACGT	2 cut(s)	6, 384
HpyCH4V	TGCA	8 cut(s)	82, 150, 191, 271, 292, 324, 485, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 416
HpyF3I	CTNAG	4 cut(s)	207, 243, 284, 458
HpySE526I	ACGT	2 cut(s)	6, 384
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	409
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	1 cut(s)	10
LguI	GCTCTTC	1 cut(s)	225
LpnPI	CCDG	8 cut(s)	153, 221, 236, 255, 302, 359, 444, 536
Lsp1109I	GCAGC	2 cut(s)	148, 487
MaeII	ACGT	2 cut(s)	6, 384
MaeIII	GTNAC	2 cut(s)	17, 385
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	3 cut(s)	242, 410, 602
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	2 cut(s)	338, 504
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	4 cut(s)	24, 148, 190, 624
MspI	CCGG	1 cut(s)	431
Mva1269I	GAATGC	2 cut(s)	208, 514
MwoI	GCNNNNNNNGC	2 cut(s)	212, 416
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	409
NlaIV	GGNNCC	3 cut(s)	240, 360, 361
NmuCI	GTSAC	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PctI	GAATGC	2 cut(s)	208, 514
PfeI	GAWTC	2 cut(s)	496, 610
PkrI	GCNGC	2 cut(s)	138, 477
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	240, 360, 361
PspOMI	GGGCCC	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	358, 359
SapI	GCTCTTC	1 cut(s)	225
SatI	GCNGC	2 cut(s)	137, 476
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	2 cut(s)	358, 359
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	362
SfcI	CTRYAG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	338, 504
TaaI	ACNGT	3 cut(s)	59, 103, 568
TaiI	ACGT	2 cut(s)	9, 387
TaqI	TCGA	2 cut(s)	9, 122
TasI	AATT	2 cut(s)	338, 504
TfiI	GAWTC	2 cut(s)	496, 610
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	2 cut(s)	136, 475
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	3 cut(s)	394, 440, 441
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	338
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.