RchiOBHm_Chr6g0301961

Glucose-induced degradation protein 8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012908
Physical Location & Seq
Forward (+)
62173728 .. 62176448
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27123

Sequence Viewer

Length: 648 bp
ATGGACGTCGATCCTAGTAACTACAATCAACTTGCTATCAATGAGAACGACACTCATAGTGTTGTCCTATCATATCTGGTGCACAACTGTTATATAGAAACTGTGGAGTCATTTGTTGCTTCTACGGGGATGAAGCAGCCTGCCGATTGCATTGATGATATGGAGAAAAGGAAAAGGATTTATCATTGTGCAGTGGAGGGGAATGCTCTTAAGGCGATTGAACTGACAGAACAGCTGGCGAATGACTTACTAGAGAAAAATAAAGACTTGCATTTTGATCTTCTCAGCCTTCACTTTGTTGAACTTGTTTGCTCTAGAAAATGCACAGAAGCTTTGGAATTTGCCCAGACCAATTTGACCCCATTTGGGAAGGTGGAAAAATACGTTGAAAAACTCGAAGACTTCATGGCTCTTCTTGCTTACGAAGAGCCGGAGAAATCCCCAATGTTTCATTTGCTTAGCAAGGATTATCGGCAGCAAGTTGCAGATAGTTTGAATCGAGCAATTCTAGCACATTCAAACCTTCCCAGTTATACAGCAATGGAAAGGCTAATACAACAGACAACAGCAGTTAAGCAATTTATAAGTGAAGACAATGCCAAGAATGGGTCACAACCATTTTCTTTGAAGGATTTTCTTAGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

215

Amino Acids

24.49

Weight (kDa)

5.0

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 54 - 192 4.8e-33 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06060 AT1G06060
fragaria_vesca FvH4_2g38860
malus_domestica MD08G1023000.v1.1 MD15G1020700.v1.1
prunus_persica Prupe.1G372300_v2.0.a1 Prupe.1G372300_v2.0.a1
pyrus_communis pycom08g01800 pycom15g01700
rosa_chinensis RchiOBHm_Chr6g0301961
rosa_laevigata RLG00000011207
rosa_multiflora Rmu_co8505221.1_g000001
rosa_roxburghii Rroxscaffold_7G00166240
rosa_rugosa Rorug06G0310600 Rorug06G0310600
rosa_samantha Rh6AG423000 Rh6BG429800
rosa_wichuraiana Rw6G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AatII GACGTC 1 cut(s) 9
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 6
AfiI CCNNNNNNNGG 2 cut(s) 366, 606
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 6 cut(s) 221, 302, 389, 496, 519, 628
AluBI AGCT 3 cut(s) 235, 332, 645
AluI AGCT 3 cut(s) 235, 332, 645
Alw21I GWGCWC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 80
AlwI GGATC 1 cut(s) 5
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 136, 475, 642
ApoI RAATTY 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
BaeGI GKGCMC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 405, 597
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 148, 487
BfaI CTAG 4 cut(s) 15, 251, 315, 509
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 3 cut(s) 137, 476, 643
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 3 cut(s) 138, 477, 644
BmrI ACTGGG 1 cut(s) 522
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 2 cut(s) 405, 597
Bpu1102I GCTNAGC 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 606
Bse1I ACTGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 546
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 366, 606
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 528
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 2 cut(s) 148, 487
BsgI GTGCAG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 431
BslI CCNNNNNNNGG 2 cut(s) 366, 606
BsmI GAATGC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 10, 277
Bsp1720I GCTNAGC 1 cut(s) 458
BspCNI CTCAG 1 cut(s) 297
BspPI GGATC 1 cut(s) 5
BspQI GCTCTTC 2 cut(s) 417, 420
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 546
BsrI ACTGG 1 cut(s) 528
BssMI GATC 2 cut(s) 10, 277
BssNI GRCGYC 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 89, 103
Bst6I CTCTTC 2 cut(s) 417, 420
BstACI GRCGYC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 141, 237
BstDEI CTNAG 3 cut(s) 284, 458, 638
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 2 cut(s) 13, 280
BstMBI GATC 2 cut(s) 10, 277
BstMWI GCNNNNNNNGC 3 cut(s) 212, 416, 509
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 148, 487
BstV2I GAAGAC 2 cut(s) 405, 597
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 141, 237
CviAII CATG 1 cut(s) 406
CviJI RGCY 8 cut(s) 139, 235, 288, 332, 410, 430, 550, 645
CviKI_1 RGCY 8 cut(s) 139, 235, 288, 332, 410, 430, 550, 645
DdeI CTNAG 3 cut(s) 284, 458, 638
DpnI GATC 2 cut(s) 12, 279
DpnII GATC 2 cut(s) 10, 277
Eam1104I CTCTTC 2 cut(s) 417, 420
EarI CTCTTC 2 cut(s) 417, 420
FaeI CATG 1 cut(s) 409
FaiI YATR 8 cut(s) 57, 73, 93, 95, 161, 407, 534, 584
FatI CATG 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 137, 476, 643
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 3 cut(s) 137, 476, 643
FspBI CTAG 4 cut(s) 15, 251, 315, 509
GluI GCNGC 3 cut(s) 137, 476, 643
HapII CCGG 1 cut(s) 431
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 2 cut(s) 107, 496
HpaII CCGG 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 315
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 299, 364, 533, 622
HpyCH4III ACNGT 2 cut(s) 89, 103
HpyCH4IV ACGT 2 cut(s) 6, 384
HpyCH4V TGCA 6 cut(s) 82, 150, 191, 271, 324, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 416, 509
HpyF3I CTNAG 3 cut(s) 284, 458, 638
HpySE526I ACGT 2 cut(s) 6, 384
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 409
Kzo9I GATC 2 cut(s) 10, 277
LguI GCTCTTC 2 cut(s) 417, 420
LpnPI CCDG 6 cut(s) 62, 153, 221, 359, 444, 541
Lsp1109I GCAGC 2 cut(s) 148, 487
MaeI CTAG 4 cut(s) 15, 251, 315, 509
MaeII ACGT 2 cut(s) 6, 384
MaeIII GTNAC 2 cut(s) 17, 609
MalI GATC 2 cut(s) 12, 279
MboI GATC 2 cut(s) 10, 277
MboII GAAGA 5 cut(s) 272, 404, 410, 437, 602
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 4 cut(s) 338, 352, 504, 578
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 1 cut(s) 190
MseI TTAA 2 cut(s) 210, 573
MspA1I CMGCKG 1 cut(s) 235
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 1 cut(s) 431
Mva1269I GAATGC 1 cut(s) 208
MwoI GCNNNNNNNGC 3 cut(s) 212, 416, 509
NdeII GATC 2 cut(s) 10, 277
NlaIII CATG 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 609
PciSI GCTCTTC 2 cut(s) 417, 420
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 496
PkrI GCNGC 3 cut(s) 138, 477, 644
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 235
SapI GCTCTTC 2 cut(s) 417, 420
SaqAI TTAA 2 cut(s) 210, 573
SatI GCNGC 3 cut(s) 137, 476, 643
Sau3AI GATC 2 cut(s) 10, 277
SchI GAGTC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 84
SetI ASST 7 cut(s) 9, 237, 334, 375, 387, 525, 647
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 4 cut(s) 338, 352, 504, 578
SspMI CTAG 4 cut(s) 15, 251, 315, 509
TaaI ACNGT 2 cut(s) 89, 103
TaiI ACGT 2 cut(s) 9, 387
TaqI TCGA 3 cut(s) 9, 396, 499
TasI AATT 4 cut(s) 338, 352, 504, 578
TfiI GAWTC 1 cut(s) 496
Tru1I TTAA 2 cut(s) 210, 573
Tru9I TTAA 2 cut(s) 210, 573
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 3 cut(s) 136, 475, 642
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 3 cut(s) 146, 394, 440
TspRI CASTG 1 cut(s) 198
Vha464I CTTAAG 1 cut(s) 209
VneI GTGCAC 1 cut(s) 80
XapI RAATTY 1 cut(s) 338
XbaI TCTAGA 1 cut(s) 314
XspI CTAG 4 cut(s) 15, 251, 315, 509
ZraI GACGTC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.