Rmu_co8505221.1_g000001

Glucose-induced degradation protein 8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8505221.1
OG0012908
Physical Location & Seq
Forward (+)
719 .. 2990
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8505221.1_g000001.1.cds

Sequence Viewer

Length: 738 bp
atggacgtcgatcctagtaactacaatcaacttgctatcaatgagaacgacactcatagtgttgtcctatcatatctggtgcacaactgttatatagaaactgtggagtcatttgttgcttctacggggatgaagcagcctgccgattgcattgatgatatggagaaaaggaaaaggatttatcattgtgcggtggaggggaatgctcttaaggcaattgaactgacagaacagctggcgaatgacttactggagaaaaataaagacttgcactttgatcttctcagccttcactttgttgaacttgtttgctctagaaaatgcacagaagctttggaatttgcccagaccaatttgaccccatttgggaaggtggaaaaatacgttgaaaaactcgaagacttcatggctcttcttgcttacgaagagccggagaaatccccaatgtttcatttgcttagcaaggattatcggcagcaagttgcagatagtttgaatcgagcaattctagcacattcaaaccttcccagttatacagcaatggaaaggctaatacaacagacaacagcagttaagcaatttataagtgaagacaatgccaaggaatgcttcaagtactactggcgaggagctattgcggttgatgagctttcaagtcttactgttcagcaaagtttgcttctaagttgccacaagttgagcaagttgagtcggggtcaccgattgtttcttgtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

245

Amino Acids

28.06

Weight (kDa)

5.49

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06060 AT1G06060
fragaria_vesca FvH4_2g38860
malus_domestica MD08G1023000.v1.1 MD15G1020700.v1.1
prunus_persica Prupe.1G372300_v2.0.a1 Prupe.1G372300_v2.0.a1
pyrus_communis pycom08g01800 pycom15g01700
rosa_chinensis RchiOBHm_Chr6g0301961
rosa_laevigata RLG00000011207
rosa_multiflora Rmu_co8505221.1_g000001
rosa_roxburghii Rroxscaffold_7G00166240
rosa_rugosa Rorug06G0310600 Rorug06G0310600
rosa_samantha Rh6AG423000 Rh6BG429800
rosa_wichuraiana Rw6G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AatII GACGTC 1 cut(s) 9
AciI CCGC 2 cut(s) 191, 638
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 617
AfiI CCNNNNNNNGG 1 cut(s) 366
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 7 cut(s) 221, 302, 389, 496, 519, 613, 654
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AluBI AGCT 4 cut(s) 235, 332, 632, 649
AluI AGCT 4 cut(s) 235, 332, 632, 649
Alw21I GWGCWC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 80
AlwI GGATC 1 cut(s) 5
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 136, 475
ApoI RAATTY 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AsuHPI GGTGA 1 cut(s) 710
BaeGI GKGCMC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 405, 597
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 148, 487
BfaI CTAG 3 cut(s) 15, 315, 509
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 2 cut(s) 137, 476
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 2 cut(s) 138, 477
BmcAI AGTACT 1 cut(s) 617
BmrI ACTGGG 1 cut(s) 522
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 2 cut(s) 405, 597
BpmI CTGGAG 1 cut(s) 272
Bpu1102I GCTNAGC 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 600
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse1I ACTGG 3 cut(s) 255, 528, 626
Bse3DI GCAATG 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 3 cut(s) 255, 528, 626
BseRI GAGGAG 1 cut(s) 642
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 2 cut(s) 148, 487
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 366
BsmI GAATGC 2 cut(s) 208, 611
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 10, 277
Bsp1720I GCTNAGC 1 cut(s) 458
BspACI CCGC 2 cut(s) 191, 638
BspCNI CTCAG 1 cut(s) 297
BspPI GGATC 1 cut(s) 5
BspQI GCTCTTC 2 cut(s) 417, 420
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 546
BsrI ACTGG 3 cut(s) 255, 528, 626
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 2 cut(s) 10, 277
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 600
Bst4CI ACNGT 3 cut(s) 89, 103, 664
Bst6I CTCTTC 2 cut(s) 417, 420
BstACI GRCGYC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 676
BstC8I GCNNGC 2 cut(s) 141, 237
BstDEI CTNAG 3 cut(s) 284, 458, 683
BstEII GGTNACC 1 cut(s) 716
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 2 cut(s) 13, 280
BstMBI GATC 2 cut(s) 10, 277
BstMWI GCNNNNNNNGC 4 cut(s) 212, 416, 509, 676
BstPI GGTNACC 1 cut(s) 716
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 148, 487
BstV2I GAAGAC 2 cut(s) 405, 597
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 141, 237
Csp6I GTAC 1 cut(s) 616
CviAII CATG 1 cut(s) 406
CviJI RGCY 9 cut(s) 139, 235, 288, 332, 410, 430, 550, 632, 649
CviKI_1 RGCY 9 cut(s) 139, 235, 288, 332, 410, 430, 550, 632, 649
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 3 cut(s) 284, 458, 683
DpnI GATC 2 cut(s) 12, 279
DpnII GATC 2 cut(s) 10, 277
Eam1104I CTCTTC 2 cut(s) 417, 420
EarI CTCTTC 2 cut(s) 417, 420
Eco130I CCWWGG 1 cut(s) 600
Eco91I GGTNACC 1 cut(s) 716
EcoO65I GGTNACC 1 cut(s) 716
EcoT14I CCWWGG 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 1 cut(s) 409
FaiI YATR 9 cut(s) 57, 73, 93, 95, 161, 407, 534, 584, 736
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FatI CATG 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 137, 476
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 137, 476
FspBI CTAG 3 cut(s) 15, 315, 509
GluI GCNGC 2 cut(s) 137, 476
GsuI CTGGAG 1 cut(s) 272
HapII CCGG 1 cut(s) 431
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 3 cut(s) 107, 496, 709
HpaII CCGG 1 cut(s) 431
HphI GGTGA 1 cut(s) 710
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 315
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 299, 364, 533
HpyCH4III ACNGT 3 cut(s) 89, 103, 664
HpyCH4IV ACGT 2 cut(s) 6, 384
HpyCH4V TGCA 5 cut(s) 82, 150, 271, 324, 485
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 416, 509, 676
HpyF3I CTNAG 3 cut(s) 284, 458, 683
HpySE526I ACGT 2 cut(s) 6, 384
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 409
Kzo9I GATC 2 cut(s) 10, 277
LguI GCTCTTC 2 cut(s) 417, 420
LmnI GCTCC 1 cut(s) 629
LpnPI CCDG 8 cut(s) 62, 153, 221, 236, 359, 444, 541, 607
Lsp1109I GCAGC 2 cut(s) 148, 487
MaeI CTAG 3 cut(s) 15, 315, 509
MaeII ACGT 2 cut(s) 6, 384
MaeIII GTNAC 2 cut(s) 17, 716
MalI GATC 2 cut(s) 12, 279
MboI GATC 2 cut(s) 10, 277
MboII GAAGA 5 cut(s) 272, 404, 410, 437, 602
MfeI CAATTG 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 5 cut(s) 216, 338, 352, 504, 578
MlyI GAGTC 2 cut(s) 116, 718
MnlI CCTC 2 cut(s) 190, 620
MseI TTAA 2 cut(s) 210, 573
MspA1I CMGCKG 1 cut(s) 235
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 1 cut(s) 431
MunI CAATTG 1 cut(s) 216
Mva1269I GAATGC 2 cut(s) 208, 611
MwoI GCNNNNNNNGC 4 cut(s) 212, 416, 509, 676
NdeII GATC 2 cut(s) 10, 277
NlaIII CATG 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 716
PciSI GCTCTTC 2 cut(s) 417, 420
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PctI GAATGC 2 cut(s) 208, 611
PfeI GAWTC 1 cut(s) 496
PkrI GCNGC 2 cut(s) 138, 477
PleI GAGTC 2 cut(s) 115, 717
PpsI GAGTC 2 cut(s) 115, 717
PsiI TTATAA 1 cut(s) 584
PspEI GGTNACC 1 cut(s) 716
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
SapI GCTCTTC 2 cut(s) 417, 420
SaqAI TTAA 2 cut(s) 210, 573
SatI GCNGC 2 cut(s) 137, 476
Sau3AI GATC 2 cut(s) 10, 277
ScaI AGTACT 1 cut(s) 617
SchI GAGTC 2 cut(s) 116, 718
SduI GDGCHC 1 cut(s) 84
SetI ASST 8 cut(s) 9, 237, 334, 375, 387, 525, 634, 651
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 5 cut(s) 216, 338, 352, 504, 578
SsiI CCGC 2 cut(s) 191, 638
SspMI CTAG 3 cut(s) 15, 315, 509
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 3 cut(s) 89, 103, 664
TaiI ACGT 2 cut(s) 9, 387
TaqI TCGA 3 cut(s) 9, 396, 499
TasI AATT 5 cut(s) 216, 338, 352, 504, 578
TatI WGTACW 1 cut(s) 615
TfiI GAWTC 1 cut(s) 496
Tru1I TTAA 2 cut(s) 210, 573
Tru9I TTAA 2 cut(s) 210, 573
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 2 cut(s) 136, 475
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 3 cut(s) 146, 394, 440
Vha464I CTTAAG 1 cut(s) 209
VneI GTGCAC 1 cut(s) 80
XapI RAATTY 1 cut(s) 338
XbaI TCTAGA 1 cut(s) 314
XspI CTAG 3 cut(s) 15, 315, 509
ZraI GACGTC 1 cut(s) 7
ZrmI AGTACT 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.