Rroxscaffold_7G00166240

Glucose-induced degradation protein 8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012908
Physical Location & Seq
Reverse (-)
7783191 .. 7785592
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166240.1

Sequence Viewer

Length: 675 bp
ATGGACGTCGATCCTAGTAACTACAATCAACTTGCTATCAATGAGAACGACACTCATAGTGTTGTCCTATCATATCTAGTGCACAACTGTTATATAGAAACTGTGGAGTCATTTGTTGCTTCTACGGGGATGAAGCAGCCTGCCGATTGTATTGATGATATGGAGAAAAGGAAAAGGATTTATCATTGTGCAGTGGAGGGGAATGCTCTTAAGGCGATTGAACTGACAGAACAGCTGGCGAATGACTTACTGGAGAAAAATAAAGACTTGCATTTTGATCTTCTCAGCCTTCACTTTGTTGAACTTCACAGAAGCTTTGGAATTTGCCCAGACCAATTTGACCCCTTTGGGAAGGTGGAAAAATACGTTGAAAAACTTGAAGACTTCATGGCTCTTCTTGCTTACGAAGAGCCGGAGAAATCCCCAATGTTTCATTTGCTTAGCAAGGATTATCGGCAGCAAGTTGCAGATAGTTTGAATCGAGCAATTCTAGCACATTCAAACCTTCCCAGTTATACAGCAATGGAAAGGCTAATACAACAGACAACAGCAGTTAAGCAATTTATAAGTGAAGACAATGCCAAGCTAATGGAGGAATGCTTCAAGTACTACTGGCGAGGAGCTATTGCGGTTGATGAGCTTTCAAGTCTTACTGTTCAGCAAGTTTGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

224

Amino Acids

25.74

Weight (kDa)

4.88

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 54 - 186 6e-22 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06060 AT1G06060
fragaria_vesca FvH4_2g38860
malus_domestica MD08G1023000.v1.1 MD15G1020700.v1.1
prunus_persica Prupe.1G372300_v2.0.a1 Prupe.1G372300_v2.0.a1
pyrus_communis pycom08g01800 pycom15g01700
rosa_chinensis RchiOBHm_Chr6g0301961
rosa_laevigata RLG00000011207
rosa_multiflora Rmu_co8505221.1_g000001
rosa_roxburghii Rroxscaffold_7G00166240
rosa_rugosa Rorug06G0310600 Rorug06G0310600
rosa_samantha Rh6AG423000 Rh6BG429800
rosa_wichuraiana Rw6G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 566
AatII GACGTC 1 cut(s) 9
AciI CCGC 1 cut(s) 629
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 608
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 8 cut(s) 221, 302, 371, 380, 478, 501, 604, 645
AluBI AGCT 5 cut(s) 235, 315, 586, 623, 640
AluI AGCT 5 cut(s) 235, 315, 586, 623, 640
Alw21I GWGCWC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 80
AlwI GGATC 1 cut(s) 5
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 136, 457
ApoI RAATTY 1 cut(s) 321
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
BaeGI GKGCMC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 387, 579
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 148, 469
BfaI CTAG 3 cut(s) 15, 77, 491
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 2 cut(s) 137, 458
BlpI GCTNAGC 1 cut(s) 440
BlsI GCNGC 2 cut(s) 138, 459
BmcAI AGTACT 1 cut(s) 608
BmrI ACTGGG 1 cut(s) 504
BmuI ACTGGG 1 cut(s) 504
BpiI GAAGAC 2 cut(s) 387, 579
BpmI CTGGAG 1 cut(s) 272
Bpu1102I GCTNAGC 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 6
Bse1I ACTGG 3 cut(s) 255, 510, 617
Bse3DI GCAATG 1 cut(s) 528
BseGI GGATG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 3 cut(s) 255, 510, 617
BseRI GAGGAG 1 cut(s) 633
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 2 cut(s) 148, 469
BsgI GTGCAG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 413
BsmI GAATGC 2 cut(s) 208, 602
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 10, 277
Bsp1720I GCTNAGC 1 cut(s) 440
BspACI CCGC 1 cut(s) 629
BspCNI CTCAG 1 cut(s) 297
BspPI GGATC 1 cut(s) 5
BspQI GCTCTTC 2 cut(s) 399, 402
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 3 cut(s) 255, 510, 617
BssMI GATC 2 cut(s) 10, 277
BssNI GRCGYC 1 cut(s) 6
Bst4CI ACNGT 3 cut(s) 89, 103, 655
Bst6I CTCTTC 2 cut(s) 399, 402
BstACI GRCGYC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 141, 237
BstDEI CTNAG 2 cut(s) 284, 440
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 2 cut(s) 13, 280
BstMBI GATC 2 cut(s) 10, 277
BstMWI GCNNNNNNNGC 3 cut(s) 212, 398, 491
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 148, 469
BstV2I GAAGAC 2 cut(s) 387, 579
BstXI CCANNNNNNTGG 1 cut(s) 589
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 141, 237
Csp6I GTAC 1 cut(s) 607
CviAII CATG 1 cut(s) 388
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 2 cut(s) 284, 440
DpnI GATC 2 cut(s) 12, 279
DpnII GATC 2 cut(s) 10, 277
Eam1104I CTCTTC 2 cut(s) 399, 402
EarI CTCTTC 2 cut(s) 399, 402
FaeI CATG 1 cut(s) 391
FaiI YATR 8 cut(s) 57, 73, 93, 95, 161, 389, 516, 566
FatI CATG 1 cut(s) 387
Fnu4HI GCNGC 2 cut(s) 137, 458
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 137, 458
FspBI CTAG 3 cut(s) 15, 77, 491
GluI GCNGC 2 cut(s) 137, 458
GsuI CTGGAG 1 cut(s) 272
HapII CCGG 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 2 cut(s) 107, 478
HpaII CCGG 1 cut(s) 413
Hpy166II GTNNAC 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 299, 346, 515
HpyCH4III ACNGT 3 cut(s) 89, 103, 655
HpyCH4IV ACGT 2 cut(s) 6, 366
HpyCH4V TGCA 4 cut(s) 82, 191, 271, 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 398, 491
HpyF3I CTNAG 2 cut(s) 284, 440
HpySE526I ACGT 2 cut(s) 6, 366
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 391
Kzo9I GATC 2 cut(s) 10, 277
LguI GCTCTTC 2 cut(s) 399, 402
LmnI GCTCC 1 cut(s) 620
LpnPI CCDG 7 cut(s) 153, 221, 236, 342, 426, 523, 598
Lsp1109I GCAGC 2 cut(s) 148, 469
MaeI CTAG 3 cut(s) 15, 77, 491
MaeII ACGT 2 cut(s) 6, 366
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 12, 279
MboI GATC 2 cut(s) 10, 277
MboII GAAGA 5 cut(s) 272, 386, 392, 419, 584
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 4 cut(s) 321, 335, 486, 560
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 3 cut(s) 190, 586, 611
MseI TTAA 3 cut(s) 210, 555, 673
MspA1I CMGCKG 1 cut(s) 235
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 1 cut(s) 413
Mva1269I GAATGC 2 cut(s) 208, 602
MwoI GCNNNNNNNGC 3 cut(s) 212, 398, 491
NdeII GATC 2 cut(s) 10, 277
NlaIII CATG 1 cut(s) 391
PciSI GCTCTTC 2 cut(s) 399, 402
PctI GAATGC 2 cut(s) 208, 602
PfeI GAWTC 1 cut(s) 478
PkrI GCNGC 2 cut(s) 138, 459
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
SapI GCTCTTC 2 cut(s) 399, 402
SaqAI TTAA 3 cut(s) 210, 555, 673
SatI GCNGC 2 cut(s) 137, 458
Sau3AI GATC 2 cut(s) 10, 277
ScaI AGTACT 1 cut(s) 608
SchI GAGTC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 84
SetI ASST 9 cut(s) 9, 237, 317, 357, 369, 507, 588, 625, 642
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 4 cut(s) 321, 335, 486, 560
SsiI CCGC 1 cut(s) 629
SspMI CTAG 3 cut(s) 15, 77, 491
TaaI ACNGT 3 cut(s) 89, 103, 655
TaiI ACGT 2 cut(s) 9, 369
TaqI TCGA 2 cut(s) 9, 481
TasI AATT 4 cut(s) 321, 335, 486, 560
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 3 cut(s) 210, 555, 673
Tru9I TTAA 3 cut(s) 210, 555, 673
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 136, 457
TspDTI ATGAA 3 cut(s) 146, 376, 422
TspRI CASTG 1 cut(s) 198
Vha464I CTTAAG 1 cut(s) 209
VneI GTGCAC 1 cut(s) 80
XapI RAATTY 1 cut(s) 321
XspI CTAG 3 cut(s) 15, 77, 491
ZraI GACGTC 1 cut(s) 7
ZrmI AGTACT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.