Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012908

Physical Location & Seq

Genomic Coordinates Reverse (-)

989613 .. 991645

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGACGTCGATCCTCGTCACTTCAATCAAGTTGCTATCAATGACAATGATATCCACAATATTGTTTTGTCATACCTTGTGCATAACTGCTATAAAGAAACTGTGGAGTCGTTTGTTGCTTCGACGGGGACGAAGCAGCCTGCCGACTGCGTTGAGGATATGGAGAAAAGAAATAGGATTTTTCAATGTGCAGTGGAAGGGGAAGCTCTTAAGGCGATTGAACTGACGGAAGAGTTGGCACCTGACTTAGTGGAGAAAAACAAAGACTTGCATTTTGACCTTCTGAGCCTGCACTTTGTTGAACTTGTTTGCGCTAAAAAATGCACAGAAGCTTTGGAATTTGCCCAGAACAAGTTGACCCCCTTTGGGAAGGTGGAAAAATATGTCACAAAGCTTGAAGACTTCATGGCTCTGCTTGCTTATAAAGAACCGGAGAAGTCTCCTATGTTTCATTTGCTTAGCTTTGAGTATCGGCAGCAAGTTGCAGATAGTTTGAATCGAGCAGTTCTTGAGCATTCGAACCTGCCCAATTATTCCGCAATGGAAAGGCTAATACAACAGACCACTGTAGTTAGACAATGCATGAGTGAAGATAATGCCAAGAATGGGAACCCCCCATTTTCTCTGAATGATTTTCTTAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH

Protein Analysis

216

Amino Acids

24.65

Weight (kDa)

5.11

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06060 AT1G06060
fragaria_vesca	FvH4_2g38860
malus_domestica	MD08G1023000.v1.1 MD15G1020700.v1.1
prunus_persica	Prupe.1G372300_v2.0.a1 Prupe.1G372300_v2.0.a1
pyrus_communis	pycom08g01800 pycom15g01700
rosa_chinensis	RchiOBHm_Chr6g0301961
rosa_laevigata	RLG00000011207
rosa_multiflora	Rmu_co8505221.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166240
rosa_rugosa	Rorug06G0310600 Rorug06G0310600
rosa_samantha	Rh6AG423000 Rh6BG429800
rosa_wichuraiana	Rw6G036650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	423
AatII	GACGTC	1 cut(s)	9
Acc36I	ACCTGC	1 cut(s)	531
AccB1I	GGYRCC	1 cut(s)	238
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	366, 606
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	6 cut(s)	25, 185, 221, 302, 398, 496
AluBI	AGCT	5 cut(s)	206, 332, 394, 462, 645
AluI	AGCT	5 cut(s)	206, 332, 394, 462, 645
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	1 cut(s)	5
ApeKI	GCWGC	2 cut(s)	136, 475
ApoI	RAATTY	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspLEI	GCGC	1 cut(s)	314
AsuII	TTCGAA	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	148, 487
BcoDI	GTCTC	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	567
BfrI	CTTAAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	531
BisI	GCNGC	2 cut(s)	137, 476
BlpI	GCTNAGC	1 cut(s)	458
BlsI	GCNGC	2 cut(s)	138, 477
BmiI	GGNNCC	2 cut(s)	240, 611
BpiI	GAAGAC	1 cut(s)	405
Bpu1102I	GCTNAGC	1 cut(s)	458
Bpu14I	TTCGAA	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 606
Bse3DI	GCAATG	1 cut(s)	546
BseLI	CCNNNNNNNGG	2 cut(s)	366, 606
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	148, 487
BsgI	GTGCAG	2 cut(s)	210, 275
BshNI	GGYRCC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	366, 606
BsmAI	GTCTC	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	514
Bsp119I	TTCGAA	1 cut(s)	518
Bsp143I	GATC	1 cut(s)	10
Bsp1720I	GCTNAGC	1 cut(s)	458
BspACI	CCGC	1 cut(s)	537
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	240, 611
BspMI	ACCTGC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	5
BspT104I	TTCGAA	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	238
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	546
BssMI	GATC	1 cut(s)	10
BssNI	GRCGYC	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	103, 568
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	6
BstAFI	CTTAAG	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	141, 290, 417
BstDEI	CTNAG	4 cut(s)	247, 284, 458, 638
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 416
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	148, 487
BstV2I	GAAGAC	1 cut(s)	405
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 564
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	3 cut(s)	141, 290, 417
CfoI	GCGC	1 cut(s)	314
CviAII	CATG	2 cut(s)	406, 583
CviJI	RGCY	9 cut(s)	139, 206, 288, 332, 394, 410, 462, 550, 645
CviKI_1	RGCY	9 cut(s)	139, 206, 288, 332, 394, 410, 462, 550, 645
DdeI	CTNAG	4 cut(s)	247, 284, 458, 638
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	584
FaeI	CATG	2 cut(s)	409, 586
FaiI	YATR	9 cut(s)	73, 84, 93, 161, 384, 407, 423, 446, 584
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	2 cut(s)	405, 582
Fnu4HI	GCNGC	2 cut(s)	137, 476
Fsp4HI	GCNGC	2 cut(s)	137, 476
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	2 cut(s)	137, 476
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	409, 586
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HindIII	AAGCTT	2 cut(s)	330, 392
HinfI	GANTC	2 cut(s)	107, 496
HpaII	CCGG	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	2 cut(s)	285, 627
Hpy188III	TCNNGA	1 cut(s)	509
Hpy8I	GTNNAC	1 cut(s)	357
Hpy99I	CGWCG	2 cut(s)	11, 127
HpyAV	CCTTC	3 cut(s)	191, 290, 364
HpyCH4III	ACNGT	2 cut(s)	103, 568
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	7 cut(s)	82, 191, 271, 292, 324, 485, 582
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 416
HpyF3I	CTNAG	4 cut(s)	247, 284, 458, 638
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	409, 586
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	6 cut(s)	153, 255, 302, 359, 444, 536
Lsp1109I	GCAGC	2 cut(s)	148, 487
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	17, 385
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	3 cut(s)	242, 410, 602
MluCI	AATT	2 cut(s)	338, 529
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	2 cut(s)	24, 148
Mph1103I	ATGCAT	1 cut(s)	584
MseI	TTAA	1 cut(s)	210
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	514
MwoI	GCNNNNNNNGC	2 cut(s)	212, 416
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	409, 586
NlaIV	GGNNCC	2 cut(s)	240, 611
NmuCI	GTSAC	2 cut(s)	17, 385
NsiI	ATGCAT	1 cut(s)	584
NspV	TTCGAA	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	138, 477
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PsiI	TTATAA	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	240, 611
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	137, 476
Sau3AI	GATC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	518
SmlI	CTYRAG	2 cut(s)	209, 509
SmoI	CTYRAG	2 cut(s)	209, 509
Sse9I	AATT	2 cut(s)	338, 529
SsiI	CCGC	1 cut(s)	537
SspI	AATATT	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	103, 568
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	4 cut(s)	9, 122, 499, 518
TasI	AATT	2 cut(s)	338, 529
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	198, 571
TseFI	GTSAC	2 cut(s)	17, 385
TseI	GCWGC	2 cut(s)	136, 475
Tsp45I	GTSAC	2 cut(s)	17, 385
TspDTI	ATGAA	2 cut(s)	394, 440
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	2 cut(s)	198, 571
Vha464I	CTTAAG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	338
ZraI	GACGTC	1 cut(s)	7
Zsp2I	ATGCAT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.