AT1G06130

hydroxyacylglutathione hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011321
Physical Location & Seq
Reverse (-)
1857757 .. 1860938
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06130.1

Sequence Viewer

Length: 996 bp
ATGCAAGCCATCTCCAAAGTTTCTTCTGCAGCATCATTCTTTAGATGTTCTAGGAAGCTAGTTAGTCAGCCATGTGTGAGGCCTTGCGTGAGACAGCTTCACGTCAGAAAGGGTCTTGTCTCTGGTGTCATGAAGCTGTTCTCTTCACCTCTTAGGACTTTGCGTGATGCTGGTAAATCCGTTCGCATTTCAAGATTCTGCAGTGTCTCCAATGTCTCTTCCTCATTGCAAATTGAACTGGTGCCATGTCTTACGGACAACTATGCTTATATCTTACATGATGAGGATACCGGTACAGTTGGTGTGGTTGACCCTTCTGAAGCTGTACCTGTTATGGATGCCCTCCAGAAGAATAGTCGAAATCTAACTTATATATTAAATACACATCACCATTATGATCACACTGGTGGCAATTTGGAATTAAAAGACAGGTATGGTGCAAAGGTGATCGGCTCAGCTGCAGATAGGGACCGGATTCCTGGAATTGATGTAGCCTTGAAAGATGCTGACAAATGGATGTTTGCTGGCCATGAAGTCCATATTATGGAAACTCCTGGCCACACCAGAGGCCATATTAGTTTCTACTTTCCAGGGGCACGAGCAATTTTCACCGGGGACACCTTGTTTAGCTTATCATGTGGTAAACTCTTCGAAGGTACTCCAGAGCAGATGCTAGCTTCTCTACAGAGGATAATTGCGTTGCCAGATGACACAAGCGTATACTGTGGCCATGAATATACACTGAGTAATTCCAAGTTTGCATTGTCTATAGAACCAACAAACGAAGTGCTCCAGTCTTATGCAGCCTACGTTGCAGAACTCCGTGACAAGAAATTACCAACGATTCCAACGACGATGAAGATGGAGAAAGCTTGTAACCCGTTTCTCCGCACTGAGAACACAGATATCCGTCGAGCTTTAGGTATTCCAGAGACAGCAGATGAAGCAGAAGCTCTGGGTATTATAAGAAGAGCAAAGGACAATTTCAAAGCTTAG

Protein Analysis

331

Amino Acids

36.62

Weight (kDa)

8.35

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 89 - 244 6.6e-23 Metallo-beta-lactamase superfamily
HAGH_C PF16123 245 - 329 1.4e-25 Hydroxyacylglutathione hydrolase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011321)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06130 AT1G06130 AT2G31350 AT2G43430 AT2G43430
fragaria_vesca FvH4_3g41770 FvH4_3g41770
malus_domestica MD04G1045200.v1.1
prunus_persica Prupe.1G198300_v2.0.a1 Prupe.1G198300_v2.0.a1
pyrus_communis pycom04g03890
rosa_chinensis RchiOBHm_Chr5g0074861
rosa_laevigata RLG00000036511
rosa_multiflora Rmu_sc0003945.1_g000008 Rmu_sc0012777.1_g000001
rosa_roxburghii Rroxscaffold_1G00006720
rosa_rugosa Rorug05G0435000
rosa_samantha Rh5CG537400 Rh5DG525800
rosa_wichuraiana Rw5G045610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 544
AccI GTMKAC 1 cut(s) 720
AciI CCGC 1 cut(s) 889
AcoI YGGCCR 3 cut(s) 526, 556, 727
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 3 cut(s) 295, 327, 658
AfiI CCNNNNNNNGG 1 cut(s) 544
AgeI ACCGGT 1 cut(s) 290
AgsI TTSAA 4 cut(s) 192, 236, 499, 988
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 3 cut(s) 478, 553, 589
AleI CACNNNNGTG 1 cut(s) 405
Alw21I GWGCWC 1 cut(s) 792
Alw26I GTCTC 5 cut(s) 85, 124, 211, 220, 926
AoxI GGCC 5 cut(s) 80, 526, 556, 568, 727
ApeKI GCWGC 3 cut(s) 29, 458, 803
AsiGI ACCGGT 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 469
AsuC2I CCSGG 1 cut(s) 613
AsuHPI GGTGA 4 cut(s) 138, 380, 457, 601
AsuII TTCGAA 1 cut(s) 651
AsuNHI GCTAGC 1 cut(s) 673
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 598
BalI TGGCCA 3 cut(s) 528, 558, 729
BanI GGYRCC 1 cut(s) 241
BauI CACGAG 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 792
BbvI GCAGC 3 cut(s) 41, 445, 815
BccI CCATC 2 cut(s) 17, 856
BciT130I CCWGG 3 cut(s) 480, 555, 591
BciVI GTATCC 1 cut(s) 280
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 613
BcoDI GTCTC 5 cut(s) 85, 124, 211, 220, 926
BfaI CTAG 3 cut(s) 51, 59, 674
BfmI CTRYAG 5 cut(s) 27, 199, 459, 683, 768
BfuI GTATCC 1 cut(s) 280
BisI GCNGC 3 cut(s) 30, 459, 804
BlpI GCTNAGC 1 cut(s) 454
BlsI GCNGC 3 cut(s) 31, 460, 805
Bme1390I CCNGG 4 cut(s) 480, 555, 591, 613
Bme18I GGWCC 1 cut(s) 469
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 2 cut(s) 243, 470
BmrFI CCNGG 4 cut(s) 480, 555, 591, 613
BmsI GCATC 5 cut(s) 41, 157, 328, 493, 660
BmtI GCTAGC 1 cut(s) 677
BpmI CTGGAG 3 cut(s) 329, 645, 776
Bpu1102I GCTNAGC 1 cut(s) 454
Bpu14I TTCGAA 1 cut(s) 651
BpuMI CCSGG 1 cut(s) 613
BsaJI CCNNGG 2 cut(s) 590, 612
BsaWI WCCGGW 2 cut(s) 290, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 3 cut(s) 243, 409, 793
Bse3DI GCAATG 1 cut(s) 224
BseBI CCWGG 3 cut(s) 480, 555, 591
BseDI CCNNGG 2 cut(s) 590, 612
BseGI GGATG 2 cut(s) 343, 522
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMI GCAATG 1 cut(s) 224
BseMII CTCAG 3 cut(s) 468, 734, 885
BseNI ACTGG 3 cut(s) 243, 409, 793
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 3 cut(s) 41, 445, 815
BshFI GGCC 5 cut(s) 82, 528, 558, 570, 729
BshNI GGYRCC 1 cut(s) 241
BshTI ACCGGT 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 792
BsiSI CCGG 3 cut(s) 291, 472, 612
BslFI GGGAC 2 cut(s) 482, 629
BslI CCNNNNNNNGG 1 cut(s) 544
BsmAI GTCTC 5 cut(s) 85, 124, 211, 220, 926
BsmFI GGGAC 2 cut(s) 482, 629
BsnI GGCC 5 cut(s) 82, 528, 558, 570, 729
Bsp119I TTCGAA 1 cut(s) 651
Bsp1286I GDGCHC 2 cut(s) 598, 792
Bsp143I GATC 2 cut(s) 397, 447
Bsp1720I GCTNAGC 1 cut(s) 454
BspACI CCGC 1 cut(s) 889
BspANI GGCC 5 cut(s) 82, 528, 558, 570, 729
BspCNI CTCAG 3 cut(s) 467, 735, 886
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 243, 470
BspMAI CTGCAG 3 cut(s) 31, 203, 463
BspOI GCTAGC 1 cut(s) 677
BspQI GCTCTTC 1 cut(s) 964
BspT104I TTCGAA 1 cut(s) 651
BspT107I GGYRCC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 3 cut(s) 243, 409, 793
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 590, 612
BssMI GATC 2 cut(s) 397, 447
BssNAI GTATAC 1 cut(s) 721
BssSI CACGAG 1 cut(s) 597
Bst1107I GTATAC 1 cut(s) 721
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 3 cut(s) 480, 555, 591
Bst4CI ACNGT 2 cut(s) 298, 725
Bst6I CTCTTC 4 cut(s) 148, 223, 653, 964
BstBI TTCGAA 1 cut(s) 651
BstC8I GCNNGC 3 cut(s) 6, 526, 675
BstDEI CTNAG 5 cut(s) 152, 454, 743, 894, 993
BstF5I GGATG 2 cut(s) 343, 522
BstKTI GATC 2 cut(s) 400, 450
BstMAI GTCTC 5 cut(s) 85, 124, 211, 220, 926
BstMBI GATC 2 cut(s) 397, 447
BstMWI GCNNNNNNNGC 2 cut(s) 812, 944
BstNI CCWGG 3 cut(s) 480, 555, 591
BstSCI CCNGG 4 cut(s) 478, 553, 589, 611
BstSFI CTRYAG 5 cut(s) 27, 199, 459, 683, 768
BstSLI GKGCMC 1 cut(s) 598
BstV1I GCAGC 3 cut(s) 41, 445, 815
BstZ17I GTATAC 1 cut(s) 721
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 5 cut(s) 82, 528, 558, 570, 729
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 2 cut(s) 343, 522
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 4 cut(s) 208, 402, 740, 891
Cac8I GCNNGC 3 cut(s) 6, 526, 675
CciI TCATGA 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 469
Csp6I GTAC 3 cut(s) 294, 326, 657
CspAI ACCGGT 1 cut(s) 290
CviAII CATG 7 cut(s) 72, 130, 246, 278, 530, 636, 731
CviQI GTAC 3 cut(s) 294, 326, 657
DdeI CTNAG 5 cut(s) 152, 454, 743, 894, 993
DpnI GATC 2 cut(s) 399, 449
DpnII GATC 2 cut(s) 397, 447
EaeI YGGCCR 3 cut(s) 526, 556, 727
Eam1104I CTCTTC 4 cut(s) 148, 223, 653, 964
EarI CTCTTC 4 cut(s) 148, 223, 653, 964
Eco147I AGGCCT 1 cut(s) 82
Eco32I GATATC 1 cut(s) 907
Eco47I GGWCC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 339
EcoRII CCWGG 3 cut(s) 478, 553, 589
EcoRV GATATC 1 cut(s) 907
FaeI CATG 7 cut(s) 75, 133, 249, 281, 533, 639, 734
FaqI GGGAC 2 cut(s) 482, 629
FatI CATG 7 cut(s) 71, 129, 245, 277, 529, 635, 730
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 3 cut(s) 30, 459, 804
FokI GGATG 2 cut(s) 350, 529
Fsp4HI GCNGC 3 cut(s) 30, 459, 804
FspBI CTAG 3 cut(s) 51, 59, 674
GluI GCNGC 3 cut(s) 30, 459, 804
GsuI CTGGAG 3 cut(s) 329, 645, 776
HaeIII GGCC 5 cut(s) 82, 528, 558, 570, 729
HapII CCGG 3 cut(s) 291, 472, 612
Hin1II CATG 7 cut(s) 75, 133, 249, 281, 533, 639, 734
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 2 cut(s) 870, 990
HinfI GANTC 3 cut(s) 195, 475, 844
HpaII CCGG 3 cut(s) 291, 472, 612
HphI GGTGA 4 cut(s) 138, 380, 457, 601
Hpy166II GTNNAC 3 cut(s) 310, 644, 721
Hpy188I TCNGA 2 cut(s) 107, 319
Hpy188III TCNNGA 5 cut(s) 130, 192, 346, 662, 929
Hpy8I GTNNAC 3 cut(s) 310, 644, 721
Hpy99I CGWCG 2 cut(s) 856, 915
HpyAV CCTTC 2 cut(s) 324, 647
HpyCH4III ACNGT 2 cut(s) 298, 725
HpyCH4IV ACGT 2 cut(s) 102, 810
HpyCH4V TGCA 9 cut(s) 4, 29, 201, 229, 440, 461, 761, 803, 815
HpyF10VI GCNNNNNNNGC 2 cut(s) 812, 944
HpyF3I CTNAG 5 cut(s) 152, 454, 743, 894, 993
HpySE526I ACGT 2 cut(s) 102, 810
Hsp92II CATG 7 cut(s) 75, 133, 249, 281, 533, 639, 734
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 2 cut(s) 397, 447
LguI GCTCTTC 1 cut(s) 964
LmnI GCTCC 1 cut(s) 795
Lsp1109I GCAGC 3 cut(s) 41, 445, 815
LweI GCATC 5 cut(s) 41, 157, 328, 493, 660
MaeI CTAG 3 cut(s) 51, 59, 674
MaeII ACGT 2 cut(s) 102, 810
MaeIII GTNAC 2 cut(s) 824, 875
MalI GATC 2 cut(s) 399, 449
MboI GATC 2 cut(s) 397, 447
MboII GAAGA 7 cut(s) 15, 135, 210, 361, 640, 871, 981
MhlI GDGCHC 2 cut(s) 598, 792
MlsI TGGCCA 3 cut(s) 528, 558, 729
MluCI AATT 9 cut(s) 231, 412, 419, 483, 603, 693, 748, 833, 982
MluNI TGGCCA 3 cut(s) 528, 558, 729
MmeI TCCRAC 1 cut(s) 872
MnlI CCTC 7 cut(s) 72, 159, 232, 277, 353, 560, 681
Mox20I TGGCCA 3 cut(s) 528, 558, 729
MroXI GAANNNNTTC 1 cut(s) 137
MscI TGGCCA 3 cut(s) 528, 558, 729
MseI TTAA 2 cut(s) 377, 422
MslI CAYNNNNRTG 2 cut(s) 393, 405
Msp20I TGGCCA 3 cut(s) 528, 558, 729
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 3 cut(s) 291, 472, 612
MspR9I CCNGG 4 cut(s) 480, 555, 591, 613
MvaI CCWGG 3 cut(s) 480, 555, 591
MwoI GCNNNNNNNGC 2 cut(s) 812, 944
NciI CCSGG 1 cut(s) 613
NdeII GATC 2 cut(s) 397, 447
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 7 cut(s) 75, 133, 249, 281, 533, 639, 734
NlaIV GGNNCC 2 cut(s) 243, 470
NmuCI GTSAC 1 cut(s) 824
NspV TTCGAA 1 cut(s) 651
OliI CACNNNNGTG 1 cut(s) 405
PagI TCATGA 1 cut(s) 129
PceI AGGCCT 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 964
PcsI WCGNNNNNNNCGW 1 cut(s) 848
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 3 cut(s) 195, 475, 844
PflMI CCANNNNNTGG 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 478
PinAI ACCGGT 1 cut(s) 290
PkrI GCNGC 3 cut(s) 31, 460, 805
PsiI TTATAA 1 cut(s) 965
Psp6I CCWGG 3 cut(s) 478, 553, 589
PspGI CCWGG 3 cut(s) 478, 553, 589
PspN4I GGNNCC 2 cut(s) 243, 470
PspPI GGNCC 1 cut(s) 469
PstI CTGCAG 3 cut(s) 31, 203, 463
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 3 cut(s) 295, 327, 658
RsaNI GTAC 3 cut(s) 294, 326, 657
RseI CAYNNNNRTG 2 cut(s) 393, 405
SapI GCTCTTC 1 cut(s) 964
SaqAI TTAA 2 cut(s) 377, 422
SatI GCNGC 3 cut(s) 30, 459, 804
Sau3AI GATC 2 cut(s) 397, 447
Sau96I GGNCC 1 cut(s) 469
ScrFI CCNGG 4 cut(s) 480, 555, 591, 613
SduI GDGCHC 2 cut(s) 598, 792
SfaNI GCATC 5 cut(s) 41, 157, 328, 493, 660
SfcI CTRYAG 5 cut(s) 27, 199, 459, 683, 768
SfuI TTCGAA 1 cut(s) 651
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 2 cut(s) 393, 405
Sse9I AATT 9 cut(s) 231, 412, 419, 483, 603, 693, 748, 833, 982
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 1 cut(s) 889
SspMI CTAG 3 cut(s) 51, 59, 674
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 4 cut(s) 478, 553, 589, 611
TaaI ACNGT 2 cut(s) 298, 725
TaiI ACGT 2 cut(s) 105, 813
TaqI TCGA 3 cut(s) 358, 651, 913
TasI AATT 9 cut(s) 231, 412, 419, 483, 603, 693, 748, 833, 982
TfiI GAWTC 3 cut(s) 195, 475, 844
Tru1I TTAA 2 cut(s) 377, 422
Tru9I TTAA 2 cut(s) 377, 422
TscAI CASTG 4 cut(s) 208, 409, 747, 898
TseFI GTSAC 1 cut(s) 824
TseI GCWGC 3 cut(s) 29, 458, 803
Tsp45I GTSAC 1 cut(s) 824
TspDTI ATGAA 5 cut(s) 146, 546, 747, 872, 957
TspGWI ACGGA 4 cut(s) 169, 269, 812, 899
TspRI CASTG 4 cut(s) 208, 409, 747, 898
Van91I CCANNNNNTGG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 720
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 3 cut(s) 51, 59, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.