Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011321

Physical Location & Seq

Genomic Coordinates Reverse (-)

5266858 .. 5270713

Gene Structure 3856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1045200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCAGATGGTATCCAAGGCCTCTTGCGCCATGGCCTCCCTCCCTTGCACTAGGGGGAGGAATGGGTTCTGCATATGGCCGGGCATGAGACAGCTTTGCCTTGGAAAGGGCCTTCTGTATGGATTCATGCACCTATTGTCTACACCGTTAAAAACTCTGCGTGGAGGAGCTAGTCGATCGCTTAAAGTTGCTAAATTTTGCAGTGTTGTTAATATGTCCCCCTCGTTACATATTGAATTGGTACCATGTCTTAGAGATAACTATGCATATCTTTTACATGATGAGGATACTGGAACAGTTGGTGTTGTTGATCCTTCTGAAGCTGTACCTGTTATAGATGCTTTGAGTCGGAAAAACAGAAATCTGACATACATACTGAACACACACCATCATCACGATCACACTGGTGGTAATGCCGAGTTAAAAGCAAGGTATGGTGCAAAGGTGATTGGTTCAGGAATAGACAGGGATAGAATTCCTGGCATTGATATTGCGTTGAATGATGGAGACAAGTGGATGTTTGCAGGGCACGAGGTGCAGGTTATGGAGACTCCTGGTCATACTAGAGGTCACATTGGCTTCTACTTTCCTCAATCGGGGGCAATTTTTACAGGCGATACTCTCTTCAGCTTATCATGTGGAAAGTTGTTTGAAGGAACACCTGAGCAGATGCATTCTTCCCTTACAAAGATCACGTCTTTGCCAGATGACACAGATATATACTGTGGTCATGAATATACCTTGAGTAACTCAAAGTTTGCCTTGTCTATAGAACCTGAGAATGAGGCACTTCAGTCCTATGCAGCTCATGTCATCCATCTTCGCAACAAGGGCATGCCTACGGTTCCAACCAGATTAAAACTGGAAAAGGAATGCAATCCTTTTCTTCGCACATCAAGTCGAGAGATTCGACAGTCGTTGAATATTCCAGACACGGCGAATGATGCGGAAGCCTTGGGTGTCATACGCCAAGCAAAGGATGCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004416 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008270 GO:0008800 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010033 GO:0010243 GO:0016787 GO:0016788 GO:0016790 GO:0016810 GO:0016812 GO:0034059 GO:0036293 GO:0042221 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070482 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

HAGH_C Lactamase_B

Protein Analysis

330

Amino Acids

36.2

Weight (kDa)

7.24

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	88 - 244	2.9e-19	Metallo-beta-lactamase superfamily
HAGH_C	PF16123	245 - 329	4.1e-25	Hydroxyacylglutathione hydrolase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06130 AT1G06130 AT2G31350 AT2G43430 AT2G43430
fragaria_vesca	FvH4_3g41770 FvH4_3g41770
malus_domestica	MD04G1045200.v1.1
prunus_persica	Prupe.1G198300_v2.0.a1 Prupe.1G198300_v2.0.a1
pyrus_communis	pycom04g03890
rosa_chinensis	RchiOBHm_Chr5g0074861
rosa_laevigata	RLG00000036511
rosa_multiflora	Rmu_sc0003945.1_g000008 Rmu_sc0012777.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006720
rosa_rugosa	Rorug05G0435000
rosa_samantha	Rh5CG537400 Rh5DG525800
rosa_wichuraiana	Rw5G045610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	529
Acc65I	GGTACC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	1 cut(s)	947
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	194, 474
AcuI	CTGAAG	3 cut(s)	339, 610, 776
AdeI	CACNNNGTG	1 cut(s)	535
AfaI	GTAC	2 cut(s)	243, 327
AfiI	CCNNNNNNNGG	3 cut(s)	106, 596, 976
AgsI	TTSAA	4 cut(s)	236, 499, 653, 922
AhdI	GACNNNNNGTC	1 cut(s)	555
AjiI	CACGTC	1 cut(s)	696
AjnI	CCWGG	2 cut(s)	478, 553
AleI	CACNNNNGTG	1 cut(s)	405
AluBI	AGCT	5 cut(s)	94, 170, 323, 630, 806
AluI	AGCT	5 cut(s)	94, 170, 323, 630, 806
Alw26I	GTCTC	3 cut(s)	82, 501, 542
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	4 cut(s)	18, 33, 77, 109
ApeKI	GCWGC	1 cut(s)	803
ApoI	RAATTY	2 cut(s)	194, 474
ArsI	GACNNNNNNTTYG	2 cut(s)	680, 712
Asp700I	GAANNNNTTC	1 cut(s)	65
Asp718I	GGTACC	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	109
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	457
BaeGI	GKGCMC	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	241
BauI	CACGAG	1 cut(s)	530
BbvI	GCAGC	1 cut(s)	815
BccI	CCATC	3 cut(s)	396, 497, 825
BceAI	ACGGC	1 cut(s)	951
BciT130I	CCWGG	2 cut(s)	480, 555
BciVI	GTATCC	2 cut(s)	22, 280
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	3 cut(s)	82, 501, 542
BfaI	CTAG	3 cut(s)	51, 171, 564
BfmI	CTRYAG	1 cut(s)	768
BfuAI	ACCTGC	1 cut(s)	529
BfuI	GTATCC	2 cut(s)	22, 280
BisI	GCNGC	1 cut(s)	804
BlsI	GCNGC	1 cut(s)	805
Bme1390I	CCNGG	3 cut(s)	81, 480, 555
BmeRI	GACNNNNNGTC	1 cut(s)	555
BmgBI	CACGTC	1 cut(s)	696
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	243, 846
BmrFI	CCNGG	3 cut(s)	81, 480, 555
BmsI	GCATC	4 cut(s)	328, 660, 934, 970
Bpu10I	CCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	763
BpuMI	CCSGG	1 cut(s)	81
BsaJI	CCNNGG	4 cut(s)	15, 30, 100, 954
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 596, 976
Bse1I	ACTGG	3 cut(s)	295, 409, 867
BseBI	CCWGG	2 cut(s)	480, 555
BseDI	CCNNGG	4 cut(s)	15, 30, 100, 954
BseGI	GGATG	3 cut(s)	522, 813, 985
BseLI	CCNNNNNNNGG	3 cut(s)	106, 596, 976
BseMII	CTCAG	2 cut(s)	654, 768
BseNI	ACTGG	3 cut(s)	295, 409, 867
BseRI	GAGGAG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	815
BsgI	GTGCAG	1 cut(s)	557
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	4 cut(s)	20, 35, 79, 111
BshNI	GGYRCC	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	106, 596, 976
BsmAI	GTCTC	3 cut(s)	82, 501, 542
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	2 cut(s)	673, 878
BsnI	GGCC	4 cut(s)	20, 35, 79, 111
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	4 cut(s)	176, 310, 397, 690
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	1 cut(s)	947
BspANI	GGCC	4 cut(s)	20, 35, 79, 111
BspCNI	CTCAG	2 cut(s)	655, 769
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	2 cut(s)	243, 846
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	241
BsrI	ACTGG	3 cut(s)	295, 409, 867
BssECI	CCNNGG	4 cut(s)	15, 30, 100, 954
BssMI	GATC	4 cut(s)	176, 310, 397, 690
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	4 cut(s)	15, 30, 100, 954
Bst2BI	CACGAG	1 cut(s)	530
Bst2UI	CCWGG	2 cut(s)	480, 555
Bst4CI	ACNGT	5 cut(s)	147, 298, 725, 844, 915
Bst6I	CTCTTC	1 cut(s)	629
BstAPI	GCANNNNNTGC	2 cut(s)	535, 980
BstC8I	GCNNGC	1 cut(s)	836
BstDEI	CTNAG	3 cut(s)	251, 663, 777
BstDSI	CCRYGG	1 cut(s)	30
BstENI	CCTNNNNNAGG	1 cut(s)	104
BstF5I	GGATG	3 cut(s)	522, 813, 985
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	4 cut(s)	179, 313, 400, 693
BstMAI	GTCTC	3 cut(s)	82, 501, 542
BstMBI	GATC	4 cut(s)	176, 310, 397, 690
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 535, 831, 944, 980
BstNI	CCWGG	2 cut(s)	480, 555
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	3 cut(s)	79, 478, 553
BstSFI	CTRYAG	1 cut(s)	768
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	815
BsuI	GTATCC	2 cut(s)	22, 280
BsuRI	GGCC	4 cut(s)	20, 35, 79, 111
BtgI	CCRYGG	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	696
BtsCI	GGATG	3 cut(s)	522, 813, 985
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	208, 402
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	836
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	242, 326
CviAII	CATG	9 cut(s)	31, 85, 127, 246, 278, 636, 731, 809, 835
CviQI	GTAC	2 cut(s)	242, 326
DdeI	CTNAG	3 cut(s)	251, 663, 777
DpnI	GATC	4 cut(s)	178, 312, 399, 692
DpnII	GATC	4 cut(s)	176, 310, 397, 690
DraIII	CACNNNGTG	1 cut(s)	535
DriI	GACNNNNNGTC	1 cut(s)	555
EaeI	YGGCCR	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	629
Eam1105I	GACNNNNNGTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	629
Eco130I	CCWWGG	4 cut(s)	15, 30, 100, 954
Eco147I	AGGCCT	1 cut(s)	20
Eco57I	CTGAAG	3 cut(s)	339, 610, 776
EcoNI	CCTNNNNNAGG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	478, 553
EcoT14I	CCWWGG	4 cut(s)	15, 30, 100, 954
EcoT22I	ATGCAT	2 cut(s)	268, 675
ErhI	CCWWGG	4 cut(s)	15, 30, 100, 954
FaeI	CATG	9 cut(s)	34, 88, 130, 249, 281, 639, 734, 812, 838
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	9 cut(s)	30, 84, 126, 245, 277, 635, 730, 808, 834
FauNDI	CATATG	1 cut(s)	74
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	804
FokI	GGATG	2 cut(s)	529, 800
Fsp4HI	GCNGC	1 cut(s)	804
FspBI	CTAG	3 cut(s)	51, 171, 564
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	804
HaeIII	GGCC	4 cut(s)	20, 35, 79, 111
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	9 cut(s)	34, 88, 130, 249, 281, 639, 734, 812, 838
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	4 cut(s)	123, 346, 550, 907
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	3 cut(s)	319, 351, 366
Hpy188III	TCNNGA	5 cut(s)	395, 456, 731, 902, 929
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	3 cut(s)	122, 324, 647
HpyCH4III	ACNGT	5 cut(s)	147, 298, 725, 844, 915
HpyCH4IV	ACGT	1 cut(s)	695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 535, 831, 944, 980
HpyF3I	CTNAG	3 cut(s)	251, 663, 777
HpySE526I	ACGT	1 cut(s)	695
Hsp92II	CATG	9 cut(s)	34, 88, 130, 249, 281, 639, 734, 812, 838
HspAI	GCGC	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	245
Kzo9I	GATC	4 cut(s)	176, 310, 397, 690
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	1 cut(s)	815
LweI	GCATC	4 cut(s)	328, 660, 934, 970
MaeI	CTAG	3 cut(s)	51, 171, 564
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	3 cut(s)	225, 569, 746
MalI	GATC	4 cut(s)	178, 312, 399, 692
MboI	GATC	4 cut(s)	176, 310, 397, 690
MboII	GAAGA	4 cut(s)	616, 669, 812, 878
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	4 cut(s)	194, 236, 474, 603
MlyI	GAGTC	2 cut(s)	355, 544
MmeI	TCCRAC	2 cut(s)	329, 872
Mph1103I	ATGCAT	2 cut(s)	268, 675
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	5 cut(s)	149, 183, 210, 422, 857
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	3 cut(s)	81, 480, 555
Mva1269I	GAATGC	2 cut(s)	673, 878
MvaI	CCWGG	2 cut(s)	480, 555
MwoI	GCNNNNNNNGC	5 cut(s)	26, 535, 831, 944, 980
NciI	CCSGG	1 cut(s)	81
NcoI	CCATGG	1 cut(s)	30
NdeI	CATATG	1 cut(s)	74
NdeII	GATC	4 cut(s)	176, 310, 397, 690
NlaIII	CATG	9 cut(s)	34, 88, 130, 249, 281, 639, 734, 812, 838
NlaIV	GGNNCC	2 cut(s)	243, 846
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	569
NsiI	ATGCAT	2 cut(s)	268, 675
NspI	RCATGY	1 cut(s)	838
OliI	CACNNNNGTG	1 cut(s)	405
PaeI	GCATGC	1 cut(s)	838
PagI	TCATGA	1 cut(s)	730
PceI	AGGCCT	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	907
PctI	GAATGC	2 cut(s)	673, 878
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	123, 907
PkrI	GCNGC	1 cut(s)	805
Ple19I	CGATCG	1 cut(s)	179
PleI	GAGTC	2 cut(s)	354, 544
PpsI	GAGTC	2 cut(s)	354, 544
Psp6I	CCWGG	2 cut(s)	478, 553
PspGI	CCWGG	2 cut(s)	478, 553
PspN4I	GGNNCC	2 cut(s)	243, 846
PspPI	GGNCC	1 cut(s)	109
PvuI	CGATCG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	243, 327
RsaNI	GTAC	2 cut(s)	242, 326
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	5 cut(s)	149, 183, 210, 422, 857
SatI	GCNGC	1 cut(s)	804
Sau3AI	GATC	4 cut(s)	176, 310, 397, 690
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	355, 544
ScrFI	CCNGG	3 cut(s)	81, 480, 555
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	4 cut(s)	328, 660, 934, 970
SfcI	CTRYAG	1 cut(s)	768
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	742
SmoI	CTYRAG	1 cut(s)	742
SphI	GCATGC	1 cut(s)	838
Sse9I	AATT	4 cut(s)	194, 236, 474, 603
SseBI	AGGCCT	1 cut(s)	20
SsiI	CCGC	1 cut(s)	947
SspI	AATATT	1 cut(s)	925
SspMI	CTAG	3 cut(s)	51, 171, 564
StuI	AGGCCT	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	79, 478, 553
StyI	CCWWGG	4 cut(s)	15, 30, 100, 954
TaaI	ACNGT	5 cut(s)	147, 298, 725, 844, 915
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	3 cut(s)	175, 901, 910
TasI	AATT	4 cut(s)	194, 236, 474, 603
TfiI	GAWTC	2 cut(s)	123, 907
Tru1I	TTAA	5 cut(s)	149, 183, 210, 422, 857
Tru9I	TTAA	5 cut(s)	149, 183, 210, 422, 857
TscAI	CASTG	2 cut(s)	208, 409
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	1 cut(s)	803
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	2 cut(s)	115, 747
TspRI	CASTG	2 cut(s)	208, 409
XagI	CCTNNNNNAGG	1 cut(s)	104
XapI	RAATTY	2 cut(s)	194, 474
XceI	RCATGY	1 cut(s)	838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XmiI	GTMKAC	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	3 cut(s)	51, 171, 564
Zsp2I	ATGCAT	2 cut(s)	268, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.