FvH4_3g41770

hydroxyacylglutathione hydrolase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011321
Physical Location & Seq
Forward (+)
35012312 .. 35016703
4392 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41770.t1

Sequence Viewer

Length: 990 bp
ATGCAGACGATCTCTAAGGCCTCCTCCGCCATGGTCTCCCTCTCCTGCTCTAGAGGGAGGAGCGGGCTCTGCGTGTGGCCTGGGATGAGACAGCTTTGCTTCAGGAAGGGCCTACTGTATGGATTTATGCAACTGATGTCAGTACCGTTGAAGTCGTTGCGTGGCGCCGCGAGTCGGTCGCTCGGTGTTTCTCAGTTCTGCAGTGTTTCCAAAATCTCGGCGTCGCTTCAAATCGAATTGGTACCGTGTCTTAGAGATAATTACGCATATCTTTTGCACGATGTGGATACCGGCACAGTTGGTGTTGTTGATCCTTCTGAAGCTGTACCTGTTATAGATGCTTTGAGTAAGAAAAATCGAAATCTGACATATATATTGAATACTCATCATCATCATGACCACACTGGGGGAAATGCAGAGTTAAAAGCAAGGTACGGTGCAAAGGTGATTGGTTCTGGAATAGACCGAGACAGAATTCCTGGCATTGATATTGTTTTAAATGATGGAGACAAATGGATGTTTGCAGGCCATGAGGTCCATGTTATGGAGACGCCTGGTCATACCAAAGGTCACATCAGCTTCTACTTTCCTGGATCAGGGTCAATATTTACAGGAGACACTTTGTTCAGCCTATCATGTGGCAAGTTGTTTGAAGGAACACCTGACCAGATGCAGTCTTCCCTTACAAAGATCATGTCTTTGCCCGATAATACAGAAGTATATTTTGGTCATGAATATACATTGAGTAACTCCAAGTTTGCCTTATCTATTGAACCGGATAATGAGGCACTTCAGTCCTATGCAGCTCATGTCGCACATCTTCGCAGCAAAGGCATCCCTACGGTTCCTACCACCTTGTTACTGGAGAAGGCTTGCAATCCATTTCTTCGCACATCCAGTACAGAAATCCGGCAGTCATTGAATATTTCAGCCTCAGCAAGTGAGGCGGAAGCCTTGGGTGTCATACGCCACGCAAAGGATACCTTTTGA

Protein Analysis

330

Amino Acids

35.78

Weight (kDa)

7.69

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 88 - 244 2.3e-20 Metallo-beta-lactamase superfamily
HAGH_C PF16123 245 - 329 9.1e-26 Hydroxyacylglutathione hydrolase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011321)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06130 AT1G06130 AT2G31350 AT2G43430 AT2G43430
fragaria_vesca FvH4_3g41770 FvH4_3g41770
malus_domestica MD04G1045200.v1.1
prunus_persica Prupe.1G198300_v2.0.a1 Prupe.1G198300_v2.0.a1
pyrus_communis pycom04g03890
rosa_chinensis RchiOBHm_Chr5g0074861
rosa_laevigata RLG00000036511
rosa_multiflora Rmu_sc0003945.1_g000008 Rmu_sc0012777.1_g000001
rosa_roxburghii Rroxscaffold_1G00006720
rosa_rugosa Rorug05G0435000
rosa_samantha Rh5CG537400 Rh5DG525800
rosa_wichuraiana Rw5G045610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 241
AccB1I GGYRCC 2 cut(s) 164, 241
AccB7I CCANNNNNTGG 1 cut(s) 544
AccBSI CCGCTC 1 cut(s) 63
AccII CGCG 1 cut(s) 170
AciI CCGC 4 cut(s) 27, 63, 168, 947
AclWI GGATC 2 cut(s) 305, 601
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 3 cut(s) 85, 339, 776
AcyI GRCGYC 3 cut(s) 165, 221, 551
AdeI CACNNNGTG 1 cut(s) 283
AfaI GTAC 5 cut(s) 144, 243, 327, 434, 901
AfiI CCNNNNNNNGG 5 cut(s) 174, 406, 544, 596, 976
AgsI TTSAA 6 cut(s) 151, 230, 379, 653, 773, 922
AhdI GACNNNNNGTC 1 cut(s) 555
AjnI CCWGG 4 cut(s) 79, 478, 553, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 708, 740
AluBI AGCT 4 cut(s) 94, 323, 579, 806
AluI AGCT 4 cut(s) 94, 323, 579, 806
Alw26I GTCTC 6 cut(s) 40, 82, 462, 501, 542, 609
AlwI GGATC 2 cut(s) 305, 601
AoxI GGCC 4 cut(s) 18, 77, 109, 526
ApeKI GCWGC 2 cut(s) 803, 825
ApoI RAATTY 1 cut(s) 474
ArsI GACNNNNNNTTYG 2 cut(s) 680, 712
Asp718I GGTACC 1 cut(s) 241
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 109, 535
AsuHPI GGTGA 1 cut(s) 457
AvaII GGWCC 1 cut(s) 535
BanI GGYRCC 2 cut(s) 164, 241
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 669
BbvCI CCTCAGC 1 cut(s) 934
BbvI GCAGC 2 cut(s) 815, 837
BccI CCATC 1 cut(s) 497
BciT130I CCWGG 4 cut(s) 81, 480, 555, 591
BciVI GTATCC 2 cut(s) 280, 973
BcoDI GTCTC 6 cut(s) 40, 82, 462, 501, 542, 609
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 199
BfoI RGCGCY 1 cut(s) 168
BfuI GTATCC 2 cut(s) 280, 973
BisI GCNGC 3 cut(s) 168, 804, 826
BlsI GCNGC 3 cut(s) 169, 805, 827
Bme1390I CCNGG 4 cut(s) 81, 480, 555, 591
Bme18I GGWCC 1 cut(s) 535
BmeRI GACNNNNNGTC 1 cut(s) 555
BmgT120I GGNCC 2 cut(s) 109, 535
BmiI GGNNCC 3 cut(s) 166, 243, 846
BmrFI CCNGG 4 cut(s) 81, 480, 555, 591
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 3 cut(s) 328, 660, 843
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 1 cut(s) 884
Bpu10I CCTNAGC 1 cut(s) 934
BsaHI GRCGYC 3 cut(s) 165, 221, 551
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 30, 80, 954
BsaWI WCCGGW 1 cut(s) 775
Bsc4I CCNNNNNNNGG 5 cut(s) 174, 406, 544, 596, 976
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 3 cut(s) 409, 867, 897
BseBI CCWGG 4 cut(s) 81, 480, 555, 591
BseDI CCNNGG 3 cut(s) 30, 80, 954
BseGI GGATG 4 cut(s) 90, 522, 834, 893
BseLI CCNNNNNNNGG 5 cut(s) 174, 406, 544, 596, 976
BseMII CTCAG 2 cut(s) 206, 948
BseNI ACTGG 3 cut(s) 409, 867, 897
BseRI GAGGAG 2 cut(s) 13, 73
BseXI GCAGC 2 cut(s) 815, 837
Bsh1236I CGCG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 4 cut(s) 20, 79, 111, 528
BshNI GGYRCC 2 cut(s) 164, 241
BsiEI CGRYCG 1 cut(s) 179
BsiSI CCGG 3 cut(s) 291, 776, 910
BslI CCNNNNNNNGG 5 cut(s) 174, 406, 544, 596, 976
BsmAI GTCTC 6 cut(s) 40, 82, 462, 501, 542, 609
BsmBI CGTCTC 1 cut(s) 542
BsnI GGCC 4 cut(s) 20, 79, 111, 528
Bso31I GGTCTC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 4 cut(s) 9, 310, 593, 690
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 4 cut(s) 27, 63, 168, 947
BspANI GGCC 4 cut(s) 20, 79, 111, 528
BspCNI CTCAG 2 cut(s) 205, 947
BspFNI CGCG 1 cut(s) 170
BspHI TCATGA 2 cut(s) 394, 730
BspLI GGNNCC 3 cut(s) 166, 243, 846
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 2 cut(s) 305, 601
BspT107I GGYRCC 2 cut(s) 164, 241
BspTNI GGTCTC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 3 cut(s) 409, 867, 897
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 30, 80, 954
BssMI GATC 4 cut(s) 9, 310, 593, 690
BssNI GRCGYC 3 cut(s) 165, 221, 551
BssT1I CCWWGG 2 cut(s) 30, 954
Bst2UI CCWGG 4 cut(s) 81, 480, 555, 591
Bst4CI ACNGT 6 cut(s) 117, 147, 246, 298, 437, 844
BstACI GRCGYC 3 cut(s) 165, 221, 551
BstC8I GCNNGC 3 cut(s) 65, 526, 874
BstDEI CTNAG 4 cut(s) 15, 192, 251, 934
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 4 cut(s) 90, 522, 834, 893
BstFNI CGCG 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 4 cut(s) 12, 313, 596, 693
BstMAI GTCTC 6 cut(s) 40, 82, 462, 501, 542, 609
BstMBI GATC 4 cut(s) 9, 310, 593, 690
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 5 cut(s) 26, 69, 812, 831, 944
BstNI CCWGG 4 cut(s) 81, 480, 555, 591
BstSCI CCNGG 4 cut(s) 79, 478, 553, 589
BstSFI CTRYAG 1 cut(s) 199
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 815, 837
BstV2I GAAGAC 1 cut(s) 669
BsuI GTATCC 2 cut(s) 280, 973
BsuRI GGCC 4 cut(s) 20, 79, 111, 528
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 4 cut(s) 90, 522, 834, 893
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 208, 402
Cac8I GCNNGC 3 cut(s) 65, 526, 874
CciI TCATGA 2 cut(s) 394, 730
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 109, 535
CseI GACGC 2 cut(s) 210, 559
Csp6I GTAC 5 cut(s) 143, 242, 326, 433, 900
CviAII CATG 8 cut(s) 31, 395, 530, 539, 636, 694, 731, 809
CviQI GTAC 5 cut(s) 143, 242, 326, 433, 900
DdeI CTNAG 4 cut(s) 15, 192, 251, 934
DinI GGCGCC 1 cut(s) 166
DpnI GATC 4 cut(s) 11, 312, 595, 692
DpnII GATC 4 cut(s) 9, 310, 593, 690
DraI TTTAAA 1 cut(s) 498
DraIII CACNNNGTG 1 cut(s) 283
DriI GACNNNNNGTC 1 cut(s) 555
Eam1105I GACNNNNNGTC 1 cut(s) 555
EciI GGCGGA 2 cut(s) 16, 962
Eco130I CCWWGG 2 cut(s) 30, 954
Eco147I AGGCCT 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 535
Eco57I CTGAAG 3 cut(s) 85, 339, 776
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 474
EcoRII CCWGG 4 cut(s) 79, 478, 553, 589
EcoT14I CCWWGG 2 cut(s) 30, 954
EcoT38I GRGCYC 1 cut(s) 69
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
ErhI CCWWGG 2 cut(s) 30, 954
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 8 cut(s) 34, 398, 533, 542, 639, 697, 734, 812
FalI AAGNNNNNCTT 3 cut(s) 746, 778, 968
FatI CATG 8 cut(s) 30, 394, 529, 538, 635, 693, 730, 808
FauI CCCGC 1 cut(s) 56
Fnu4HI GCNGC 3 cut(s) 168, 804, 826
FokI GGATG 4 cut(s) 97, 529, 821, 880
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 168, 804, 826
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 166
GluI GCNGC 3 cut(s) 168, 804, 826
GsuI CTGGAG 1 cut(s) 884
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 4 cut(s) 20, 79, 111, 528
HapII CCGG 3 cut(s) 291, 776, 910
HgaI GACGC 2 cut(s) 210, 559
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 3 cut(s) 165, 221, 551
Hin1II CATG 8 cut(s) 34, 398, 533, 542, 639, 697, 734, 812
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HinfI GANTC 1 cut(s) 172
HpaII CCGG 3 cut(s) 291, 776, 910
HphI GGTGA 1 cut(s) 457
Hpy188I TCNGA 2 cut(s) 319, 366
Hpy188III TCNNGA 5 cut(s) 51, 103, 395, 456, 731
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 4 cut(s) 100, 324, 647, 862
HpyCH4III ACNGT 6 cut(s) 117, 147, 246, 298, 437, 844
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 69, 812, 831, 944
HpyF3I CTNAG 4 cut(s) 15, 192, 251, 934
Hsp92I GRCGYC 3 cut(s) 165, 221, 551
Hsp92II CATG 8 cut(s) 34, 398, 533, 542, 639, 697, 734, 812
HspAI GCGC 1 cut(s) 165
KasI GGCGCC 1 cut(s) 164
KpnI GGTACC 1 cut(s) 245
Kzo9I GATC 4 cut(s) 9, 310, 593, 690
LmnI GCTCC 1 cut(s) 60
Lsp1109I GCAGC 2 cut(s) 815, 837
LweI GCATC 3 cut(s) 328, 660, 843
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 3 cut(s) 569, 746, 858
MalI GATC 4 cut(s) 11, 312, 595, 692
MbiI CCGCTC 1 cut(s) 63
MboI GATC 4 cut(s) 9, 310, 593, 690
MboII GAAGA 3 cut(s) 669, 812, 878
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 3 cut(s) 236, 259, 474
Mly113I GGCGCC 1 cut(s) 165
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 9 cut(s) 31, 34, 47, 50, 51, 526, 778, 937, 943
MseI TTAA 2 cut(s) 422, 497
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 3 cut(s) 291, 776, 910
MspR9I CCNGG 4 cut(s) 81, 480, 555, 591
MvaI CCWGG 4 cut(s) 81, 480, 555, 591
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 5 cut(s) 26, 69, 812, 831, 944
NarI GGCGCC 1 cut(s) 165
NcoI CCATGG 1 cut(s) 30
NdeII GATC 4 cut(s) 9, 310, 593, 690
NlaIII CATG 8 cut(s) 34, 398, 533, 542, 639, 697, 734, 812
NlaIV GGNNCC 3 cut(s) 166, 243, 846
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 569
PagI TCATGA 2 cut(s) 394, 730
PceI AGGCCT 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 3 cut(s) 169, 805, 827
PleI GAGTC 1 cut(s) 180
PluTI GGCGCC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 180
Psp6I CCWGG 4 cut(s) 79, 478, 553, 589
PspGI CCWGG 4 cut(s) 79, 478, 553, 589
PspN4I GGNNCC 3 cut(s) 166, 243, 846
PspPI GGNCC 2 cut(s) 109, 535
PstI CTGCAG 1 cut(s) 203
RsaI GTAC 5 cut(s) 144, 243, 327, 434, 901
RsaNI GTAC 5 cut(s) 143, 242, 326, 433, 900
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 2 cut(s) 422, 497
SatI GCNGC 3 cut(s) 168, 804, 826
Sau3AI GATC 4 cut(s) 9, 310, 593, 690
Sau96I GGNCC 2 cut(s) 109, 535
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 4 cut(s) 81, 480, 555, 591
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 3 cut(s) 328, 660, 843
SfcI CTRYAG 1 cut(s) 199
SfoI GGCGCC 1 cut(s) 166
SinI GGWCC 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 3 cut(s) 236, 259, 474
SseBI AGGCCT 1 cut(s) 20
SsiI CCGC 4 cut(s) 27, 63, 168, 947
SspDI GGCGCC 1 cut(s) 164
SspI AATATT 2 cut(s) 606, 925
SspMI CTAG 1 cut(s) 51
StuI AGGCCT 1 cut(s) 20
StyD4I CCNGG 4 cut(s) 79, 478, 553, 589
StyI CCWWGG 2 cut(s) 30, 954
TaaI ACNGT 6 cut(s) 117, 147, 246, 298, 437, 844
TaqI TCGA 2 cut(s) 234, 358
TaqII GACCGA 2 cut(s) 165, 480
TasI AATT 3 cut(s) 236, 259, 474
TatI WGTACW 1 cut(s) 899
TauI GCSGC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 422, 497
Tru9I TTAA 2 cut(s) 422, 497
TscAI CASTG 2 cut(s) 208, 409
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 2 cut(s) 803, 825
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 1 cut(s) 747
TspRI CASTG 2 cut(s) 208, 409
Van91I CCANNNNNTGG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 535
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 1 cut(s) 474
XbaI TCTAGA 1 cut(s) 50
XcmI CCANNNNNNNNNTGG 1 cut(s) 859
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.