pycom04g03890

hydroxyacylglutathione hydrolase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0011321
Physical Location & Seq
Reverse (-)
3490850 .. 3494351
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g03890.3

Sequence Viewer

Length: 990 bp
ATGCAGATGGTATCCAAGGCCTCTTGCGCCATGGCCTCCCTCCCTTGCACTAGGGGGAGGAGTGGGTTCTGCATATGGCCGGGCATGAGACAGCTTTGCCTTGGAAAGGGCCTTCTGTATGGATTCATGCACCTATTGTCGACACCGTTAAAAACTCTGCGTGGGGGAGCTAGTCGATCGCTTAAAGTCGCTAAATTTTGCAGTGTTGTTAATATGCCCCCCTCGTTACATATTGAATTGGTGCCATGTCTTAGAGATAACTATGCTTATCTTTTACATGATGAGGATACTGGAACAGTTGGTGTTGTTGATCCTTCTGAAGCTGTACCTGTTATAGATGCTTTGAGTAGGAAAAACAGAAATCTGACATACATACTGAACACACACCATCATCATGATCACACTGGTGGTAATGCCGAGTTAAAGGCAAGGTACGGTGCAAAGGTGATTGGTTCAGGAATAGACAGGGATAGAATTCCTGGCATTGATATTGCATTGAATGATGGAGACAAGTGGATGTTTGCAGGGCACGAGGTGCAGGTTATGGAGACTCCTGGTCATACTAGAGGTCACATTAGCTTCTACTTTCCTCGATCAGGGGCAATTTTTACAGGCGATACTCTCTTCAGCTTATCATGTGGAAAGTTGTTTGAAGGAACACCTGAGCAGATGCATTCTTCCCTTACAAAGATCACGTCTTTGCCAGACGACACAGATGTATACTGTGGTCATGAATATACCTTGAGTAACTCAAAGTTCGCCTTGTCCATAGAACCTGAGAATGAGGCACTTCAGTCTTATGCAGCTAATGTCACCCATCTTTGCAACAAGGGCATGCCTACGGTTCCAACCAGATTAAAACTGGAAAAGGAATGCAATCCTTTTCTTCGCACATCAAGTCGAGAGATTCGACAGTCGTTGAATATTCCAGACACGGCGAATGATGCGGAAGCCTTGGGTGTCATACGCCAAGCAAAGGATGCGTTTTGA

Protein Analysis

330

Amino Acids

36.14

Weight (kDa)

7.21

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011321)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06130 AT1G06130 AT2G31350 AT2G43430 AT2G43430
fragaria_vesca FvH4_3g41770 FvH4_3g41770
malus_domestica MD04G1045200.v1.1
prunus_persica Prupe.1G198300_v2.0.a1 Prupe.1G198300_v2.0.a1
pyrus_communis pycom04g03890
rosa_chinensis RchiOBHm_Chr5g0074861
rosa_laevigata RLG00000036511
rosa_multiflora Rmu_sc0003945.1_g000008 Rmu_sc0012777.1_g000001
rosa_roxburghii Rroxscaffold_1G00006720
rosa_rugosa Rorug05G0435000
rosa_samantha Rh5CG537400 Rh5DG525800
rosa_wichuraiana Rw5G045610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 529
AccB1I GGYRCC 1 cut(s) 241
AccI GTMKAC 2 cut(s) 140, 720
AciI CCGC 1 cut(s) 947
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 2 cut(s) 194, 474
AcuI CTGAAG 3 cut(s) 339, 610, 776
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 2 cut(s) 327, 434
AfiI CCNNNNNNNGG 3 cut(s) 106, 596, 976
AgsI TTSAA 4 cut(s) 236, 499, 653, 922
AhdI GACNNNNNGTC 1 cut(s) 555
AjiI CACGTC 1 cut(s) 696
AjnI CCWGG 2 cut(s) 478, 553
AleI CACNNNNGTG 1 cut(s) 405
AluBI AGCT 6 cut(s) 94, 170, 323, 579, 630, 806
AluI AGCT 6 cut(s) 94, 170, 323, 579, 630, 806
Alw26I GTCTC 3 cut(s) 82, 501, 542
AlwI GGATC 1 cut(s) 305
AoxI GGCC 4 cut(s) 18, 33, 77, 109
ApeKI GCWGC 1 cut(s) 803
ApoI RAATTY 2 cut(s) 194, 474
ArsI GACNNNNNNTTYG 2 cut(s) 680, 712
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 457, 805
BaeGI GKGCMC 1 cut(s) 531
BanI GGYRCC 1 cut(s) 241
BauI CACGAG 1 cut(s) 530
BbvI GCAGC 1 cut(s) 815
BccI CCATC 3 cut(s) 396, 497, 825
BceAI ACGGC 1 cut(s) 951
BciT130I CCWGG 2 cut(s) 480, 555
BciVI GTATCC 2 cut(s) 22, 280
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 3 cut(s) 82, 501, 542
BfaI CTAG 3 cut(s) 51, 171, 564
BfuAI ACCTGC 1 cut(s) 529
BfuI GTATCC 2 cut(s) 22, 280
BisI GCNGC 1 cut(s) 804
BlsI GCNGC 1 cut(s) 805
Bme1390I CCNGG 3 cut(s) 81, 480, 555
BmeRI GACNNNNNGTC 1 cut(s) 555
BmgBI CACGTC 1 cut(s) 696
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 243, 846
BmrFI CCNGG 3 cut(s) 81, 480, 555
BmsI GCATC 4 cut(s) 328, 660, 934, 970
Bpu10I CCTNAGC 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 763
BpuMI CCSGG 1 cut(s) 81
BsaJI CCNNGG 4 cut(s) 15, 30, 100, 954
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 596, 976
Bse1I ACTGG 3 cut(s) 295, 409, 867
BseBI CCWGG 2 cut(s) 480, 555
BseDI CCNNGG 4 cut(s) 15, 30, 100, 954
BseGI GGATG 2 cut(s) 522, 985
BseLI CCNNNNNNNGG 3 cut(s) 106, 596, 976
BseMII CTCAG 2 cut(s) 654, 768
BseNI ACTGG 3 cut(s) 295, 409, 867
BseRI GAGGAG 1 cut(s) 73
BseSI GKGCMC 1 cut(s) 531
BseXI GCAGC 1 cut(s) 815
BsgI GTGCAG 1 cut(s) 557
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 4 cut(s) 20, 35, 79, 111
BshNI GGYRCC 1 cut(s) 241
BsiEI CGRYCG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 3 cut(s) 106, 596, 976
BsmAI GTCTC 3 cut(s) 82, 501, 542
BsmI GAATGC 2 cut(s) 673, 878
BsnI GGCC 4 cut(s) 20, 35, 79, 111
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 5 cut(s) 176, 310, 397, 593, 690
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 1 cut(s) 947
BspANI GGCC 4 cut(s) 20, 35, 79, 111
BspCNI CTCAG 2 cut(s) 655, 769
BspHI TCATGA 2 cut(s) 394, 730
BspLI GGNNCC 2 cut(s) 243, 846
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 241
BsrI ACTGG 3 cut(s) 295, 409, 867
BssECI CCNNGG 4 cut(s) 15, 30, 100, 954
BssMI GATC 5 cut(s) 176, 310, 397, 593, 690
BssNAI GTATAC 1 cut(s) 721
BssSI CACGAG 1 cut(s) 530
BssT1I CCWWGG 4 cut(s) 15, 30, 100, 954
Bst1107I GTATAC 1 cut(s) 721
Bst2BI CACGAG 1 cut(s) 530
Bst2UI CCWGG 2 cut(s) 480, 555
Bst4CI ACNGT 6 cut(s) 147, 298, 437, 725, 844, 915
Bst6I CTCTTC 1 cut(s) 629
BstAPI GCANNNNNTGC 2 cut(s) 535, 980
BstC8I GCNNGC 1 cut(s) 836
BstDEI CTNAG 3 cut(s) 251, 663, 777
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 2 cut(s) 104, 594
BstF5I GGATG 2 cut(s) 522, 985
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 5 cut(s) 179, 313, 400, 596, 693
BstMAI GTCTC 3 cut(s) 82, 501, 542
BstMBI GATC 5 cut(s) 176, 310, 397, 593, 690
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 5 cut(s) 26, 535, 831, 944, 980
BstNI CCWGG 2 cut(s) 480, 555
BstNSI RCATGY 1 cut(s) 838
BstSCI CCNGG 3 cut(s) 79, 478, 553
BstSLI GKGCMC 1 cut(s) 531
BstV1I GCAGC 1 cut(s) 815
BstZ17I GTATAC 1 cut(s) 721
BsuI GTATCC 2 cut(s) 22, 280
BsuRI GGCC 4 cut(s) 20, 35, 79, 111
BtgI CCRYGG 1 cut(s) 30
BtrI CACGTC 1 cut(s) 696
BtsCI GGATG 2 cut(s) 522, 985
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 208, 402
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 1 cut(s) 836
CciI TCATGA 2 cut(s) 394, 730
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 326, 433
CviAII CATG 9 cut(s) 31, 85, 127, 246, 278, 395, 636, 731, 835
CviQI GTAC 2 cut(s) 326, 433
DdeI CTNAG 3 cut(s) 251, 663, 777
DpnI GATC 5 cut(s) 178, 312, 399, 595, 692
DpnII GATC 5 cut(s) 176, 310, 397, 593, 690
DraIII CACNNNGTG 1 cut(s) 535
DriI GACNNNNNGTC 1 cut(s) 555
EaeI YGGCCR 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 629
Eam1105I GACNNNNNGTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 629
Eco130I CCWWGG 4 cut(s) 15, 30, 100, 954
Eco147I AGGCCT 1 cut(s) 20
Eco57I CTGAAG 3 cut(s) 339, 610, 776
EcoNI CCTNNNNNAGG 2 cut(s) 104, 594
EcoO109I RGGNCCY 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 474
EcoRII CCWGG 2 cut(s) 478, 553
EcoT14I CCWWGG 4 cut(s) 15, 30, 100, 954
EcoT22I ATGCAT 1 cut(s) 675
ErhI CCWWGG 4 cut(s) 15, 30, 100, 954
FaeI CATG 9 cut(s) 34, 88, 130, 249, 281, 398, 639, 734, 838
FalI AAGNNNNNCTT 2 cut(s) 746, 778
FatI CATG 9 cut(s) 30, 84, 126, 245, 277, 394, 635, 730, 834
FauNDI CATATG 1 cut(s) 74
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 2 cut(s) 140, 720
Fnu4HI GCNGC 1 cut(s) 804
FokI GGATG 1 cut(s) 529
Fsp4HI GCNGC 1 cut(s) 804
FspBI CTAG 3 cut(s) 51, 171, 564
GlaI GCGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 804
HaeIII GGCC 4 cut(s) 20, 35, 79, 111
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 29
Hin1II CATG 9 cut(s) 34, 88, 130, 249, 281, 398, 639, 734, 838
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 3 cut(s) 123, 550, 907
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 457, 805
Hpy166II GTNNAC 2 cut(s) 141, 721
Hpy188I TCNGA 2 cut(s) 319, 366
Hpy188III TCNNGA 5 cut(s) 395, 456, 731, 902, 929
Hpy8I GTNNAC 2 cut(s) 141, 721
HpyAV CCTTC 3 cut(s) 122, 324, 647
HpyCH4III ACNGT 6 cut(s) 147, 298, 437, 725, 844, 915
HpyCH4IV ACGT 1 cut(s) 695
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 535, 831, 944, 980
HpyF3I CTNAG 3 cut(s) 251, 663, 777
HpySE526I ACGT 1 cut(s) 695
Hsp92II CATG 9 cut(s) 34, 88, 130, 249, 281, 398, 639, 734, 838
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 5 cut(s) 176, 310, 397, 593, 690
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 1 cut(s) 815
LweI GCATC 4 cut(s) 328, 660, 934, 970
MaeI CTAG 3 cut(s) 51, 171, 564
MaeII ACGT 1 cut(s) 695
MaeIII GTNAC 4 cut(s) 225, 569, 746, 811
MalI GATC 5 cut(s) 178, 312, 399, 595, 692
MboI GATC 5 cut(s) 176, 310, 397, 593, 690
MboII GAAGA 3 cut(s) 616, 669, 878
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 4 cut(s) 194, 236, 474, 603
MlyI GAGTC 1 cut(s) 544
MmeI TCCRAC 1 cut(s) 872
Mph1103I ATGCAT 1 cut(s) 675
MseI TTAA 5 cut(s) 149, 183, 210, 422, 857
MslI CAYNNNNRTG 2 cut(s) 393, 405
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 3 cut(s) 81, 480, 555
Mva1269I GAATGC 2 cut(s) 673, 878
MvaI CCWGG 2 cut(s) 480, 555
MwoI GCNNNNNNNGC 5 cut(s) 26, 535, 831, 944, 980
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 30
NdeI CATATG 1 cut(s) 74
NdeII GATC 5 cut(s) 176, 310, 397, 593, 690
NlaIII CATG 9 cut(s) 34, 88, 130, 249, 281, 398, 639, 734, 838
NlaIV GGNNCC 2 cut(s) 243, 846
NmeAIII GCCGAG 1 cut(s) 442
NmuCI GTSAC 2 cut(s) 569, 811
NsiI ATGCAT 1 cut(s) 675
NspI RCATGY 1 cut(s) 838
OliI CACNNNNGTG 1 cut(s) 405
PaeI GCATGC 1 cut(s) 838
PagI TCATGA 2 cut(s) 394, 730
PceI AGGCCT 1 cut(s) 20
PcsI WCGNNNNNNNCGW 1 cut(s) 907
PctI GAATGC 2 cut(s) 673, 878
PfeI GAWTC 2 cut(s) 123, 907
PkrI GCNGC 1 cut(s) 805
Ple19I CGATCG 1 cut(s) 179
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
Psp6I CCWGG 2 cut(s) 478, 553
PspGI CCWGG 2 cut(s) 478, 553
PspN4I GGNNCC 2 cut(s) 243, 846
PspPI GGNCC 1 cut(s) 109
PvuI CGATCG 1 cut(s) 179
RsaI GTAC 2 cut(s) 327, 434
RsaNI GTAC 2 cut(s) 326, 433
RseI CAYNNNNRTG 2 cut(s) 393, 405
SalI GTCGAC 1 cut(s) 139
SaqAI TTAA 5 cut(s) 149, 183, 210, 422, 857
SatI GCNGC 1 cut(s) 804
Sau3AI GATC 5 cut(s) 176, 310, 397, 593, 690
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 544
ScrFI CCNGG 3 cut(s) 81, 480, 555
SduI GDGCHC 1 cut(s) 531
SfaNI GCATC 4 cut(s) 328, 660, 934, 970
SmiMI CAYNNNNRTG 2 cut(s) 393, 405
SmlI CTYRAG 1 cut(s) 742
SmoI CTYRAG 1 cut(s) 742
SphI GCATGC 1 cut(s) 838
Sse9I AATT 4 cut(s) 194, 236, 474, 603
SseBI AGGCCT 1 cut(s) 20
SsiI CCGC 1 cut(s) 947
SspI AATATT 1 cut(s) 925
SspMI CTAG 3 cut(s) 51, 171, 564
StuI AGGCCT 1 cut(s) 20
StyD4I CCNGG 3 cut(s) 79, 478, 553
StyI CCWWGG 4 cut(s) 15, 30, 100, 954
TaaI ACNGT 6 cut(s) 147, 298, 437, 725, 844, 915
TaiI ACGT 1 cut(s) 698
TaqI TCGA 5 cut(s) 140, 175, 592, 901, 910
TasI AATT 4 cut(s) 194, 236, 474, 603
TfiI GAWTC 2 cut(s) 123, 907
Tru1I TTAA 5 cut(s) 149, 183, 210, 422, 857
Tru9I TTAA 5 cut(s) 149, 183, 210, 422, 857
TscAI CASTG 2 cut(s) 208, 409
TseFI GTSAC 2 cut(s) 569, 811
TseI GCWGC 1 cut(s) 803
Tsp45I GTSAC 2 cut(s) 569, 811
TspDTI ATGAA 2 cut(s) 115, 747
TspRI CASTG 2 cut(s) 208, 409
XagI CCTNNNNNAGG 2 cut(s) 104, 594
XapI RAATTY 2 cut(s) 194, 474
XceI RCATGY 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 859
XmiI GTMKAC 2 cut(s) 140, 720
XspI CTAG 3 cut(s) 51, 171, 564
Zsp2I ATGCAT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.