Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011321

Physical Location & Seq

Genomic Coordinates Forward (+)

81434884 .. 81439343

Gene Structure 4460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036511

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCAGACGACGATCTCTAAGGCCTCTTCCGCCATGGTCTCCCTCCCTTGCACTAGGGGGAGGAGTGGGCTGTGTGTGTGGCCTGGGATGAGGCAGCTTTGCTTTAGGAAAGGCCTCTTGTATGGATTCATGCAACTTTTGTCTGTGCCGTTGAAATCCTTGCGTGGAGCGGCGAGTCGATCGCTTGAAGTTTCTCAGTTCTGCAGTGTTTCCAAAATCTCGGCCTCGTTGCAAATCGAATTGGTGAGCATTCACAGATCTCTCTATGATCCTTCTGAAGCTGTTCCTGTTATCGATGCTTTGAGTAAGAAAAACCGAAATCTGACATATATACTGAATACTCATCATCATCATGATCACACTGGGGGAAATGCAGAGTTAAAAGCAAGGTACGGTGCAAAGGTGATTGGTTCAGGAATAGACCGAGACAGAATTCCTGGCATTGATATCGTTTTAAACGACGGAGACAAATGGATGTTTGCAGGGCATGAGGTCCATGTTATGGGGACGCCTGGTCATACCAAAGGTCACATCAGCTTCTACTTTCCTGGATCTGGGTCAATATTTACAGGAGACACTTTGTTCAGCCTATCATGTGGCAAGTTGTTTGAAGGAACACCTGACCAGATGCAGTCTTCCCTTACAAAGATCATGTCTTTGCCAGATGATACAGAAGTATACTTTGGTCATGAATATACATTGAGTAACTCTAAGTTTGCCTTATCTGTTGAACCTGAGAACGAGGCACTTCAGTCCTACGCAGCCCGTGTCGCACATCTTCGCAGCAAAGGCGTGCCTACGGTTCCTACTACATTGTTACTGGAGAAGGCTTGCAATCCTTTTCTTCGCACATCCAGTACAGAGATAAGGCAGTTGTTAAATATATCAGCCTCAGCAAGTGAGGCGGAAGCCTTGGGTGTCATACGCCAAGCCAAGGATGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004416 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008270 GO:0008800 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010033 GO:0010243 GO:0016787 GO:0016788 GO:0016790 GO:0016810 GO:0016812 GO:0034059 GO:0036293 GO:0042221 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070482 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

HAGH_C Lactamase_B

Protein Analysis

316

Amino Acids

34.33

Weight (kDa)

8.68

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	98 - 230	2.1e-20	Metallo-beta-lactamase superfamily
HAGH_C	PF16123	231 - 315	1.5e-25	Hydroxyacylglutathione hydrolase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06130 AT1G06130 AT2G31350 AT2G43430 AT2G43430
fragaria_vesca	FvH4_3g41770 FvH4_3g41770
malus_domestica	MD04G1045200.v1.1
prunus_persica	Prupe.1G198300_v2.0.a1 Prupe.1G198300_v2.0.a1
pyrus_communis	pycom04g03890
rosa_chinensis	RchiOBHm_Chr5g0074861
rosa_laevigata	RLG00000036511
rosa_multiflora	Rmu_sc0003945.1_g000008 Rmu_sc0012777.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006720
rosa_rugosa	Rorug05G0435000
rosa_samantha	Rh5CG537400 Rh5DG525800
rosa_wichuraiana	Rw5G045610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	502
AccBSI	CCGCTC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	678
AciI	CCGC	3 cut(s)	30, 170, 905
AclWI	GGATC	2 cut(s)	263, 559
AcsI	RAATTY	1 cut(s)	432
AcuI	CTGAAG	2 cut(s)	297, 734
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	2 cut(s)	392, 859
AfiI	CCNNNNNNNGG	3 cut(s)	502, 554, 934
AgsI	TTSAA	4 cut(s)	154, 188, 611, 731
AhdI	GACNNNNNGTC	1 cut(s)	513
AjnI	CCWGG	4 cut(s)	82, 436, 511, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	3 cut(s)	97, 281, 537
AluI	AGCT	3 cut(s)	97, 281, 537
Alw26I	GTCTC	4 cut(s)	43, 420, 459, 567
AlwI	GGATC	2 cut(s)	263, 559
AoxI	GGCC	4 cut(s)	21, 80, 112, 222
ApeKI	GCWGC	3 cut(s)	94, 761, 783
ApoI	RAATTY	1 cut(s)	432
ArsI	GACNNNNNNTTYG	2 cut(s)	638, 670
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	2 cut(s)	256, 415
AvaII	GGWCC	1 cut(s)	493
BaeI	ACNNNNGTAYC	2 cut(s)	660, 693
BbsI	GAAGAC	1 cut(s)	627
BbvCI	CCTCAGC	1 cut(s)	892
BbvI	GCAGC	3 cut(s)	106, 773, 795
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BciT130I	CCWGG	4 cut(s)	84, 438, 513, 549
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	4 cut(s)	43, 420, 459, 567
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	202
BglII	AGATCT	1 cut(s)	257
BisI	GCNGC	4 cut(s)	95, 171, 762, 784
BlsI	GCNGC	4 cut(s)	96, 172, 763, 785
Bme1390I	CCNGG	4 cut(s)	84, 438, 513, 549
Bme18I	GGWCC	1 cut(s)	493
BmeRI	GACNNNNNGTC	1 cut(s)	513
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	804
BmrFI	CCNGG	4 cut(s)	84, 438, 513, 549
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	3 cut(s)	286, 618, 928
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	627
BpmI	CTGGAG	1 cut(s)	842
Bpu10I	CCTNAGC	1 cut(s)	892
Bsa29I	ATCGAT	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	4 cut(s)	33, 83, 912, 933
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 554, 934
Bse1I	ACTGG	3 cut(s)	367, 825, 855
BseBI	CCWGG	4 cut(s)	84, 438, 513, 549
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	4 cut(s)	33, 83, 912, 933
BseGI	GGATG	4 cut(s)	93, 480, 851, 943
BseLI	CCNNNNNNNGG	3 cut(s)	502, 554, 934
BseMII	CTCAG	3 cut(s)	209, 726, 906
BseNI	ACTGG	3 cut(s)	367, 825, 855
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	3 cut(s)	106, 773, 795
Bsh1285I	CGRYCG	1 cut(s)	182
BshFI	GGCC	4 cut(s)	23, 82, 114, 224
BshVI	ATCGAT	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	3 cut(s)	502, 554, 934
BsmAI	GTCTC	4 cut(s)	43, 420, 459, 567
BsmFI	GGGAC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	4 cut(s)	23, 82, 114, 224
Bso31I	GGTCTC	1 cut(s)	43
Bsp143I	GATC	7 cut(s)	12, 179, 257, 268, 355, 551, 648
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	3 cut(s)	30, 170, 905
BspANI	GGCC	4 cut(s)	23, 82, 114, 224
BspCNI	CTCAG	3 cut(s)	208, 727, 905
BspDI	ATCGAT	1 cut(s)	294
BspHI	TCATGA	2 cut(s)	352, 688
BspLI	GGNNCC	1 cut(s)	804
BspMAI	CTGCAG	1 cut(s)	206
BspPI	GGATC	2 cut(s)	263, 559
BspTNI	GGTCTC	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	170
BsrI	ACTGG	3 cut(s)	367, 825, 855
BssECI	CCNNGG	4 cut(s)	33, 83, 912, 933
BssMI	GATC	7 cut(s)	12, 179, 257, 268, 355, 551, 648
BssNAI	GTATAC	1 cut(s)	679
BssNI	GRCGYC	1 cut(s)	509
BssT1I	CCWWGG	3 cut(s)	33, 912, 933
Bst1107I	GTATAC	1 cut(s)	679
Bst2UI	CCWGG	4 cut(s)	84, 438, 513, 549
Bst4CI	ACNGT	2 cut(s)	395, 802
Bst6I	CTCTTC	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	794, 832
BstDEI	CTNAG	5 cut(s)	18, 195, 711, 735, 892
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	4 cut(s)	93, 480, 851, 943
BstKTI	GATC	7 cut(s)	15, 182, 260, 271, 358, 554, 651
BstMAI	GTCTC	4 cut(s)	43, 420, 459, 567
BstMBI	GATC	7 cut(s)	12, 179, 257, 268, 355, 551, 648
BstMCI	CGRYCG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 770, 789, 902, 938
BstNI	CCWGG	4 cut(s)	84, 438, 513, 549
BstSCI	CCNGG	4 cut(s)	82, 436, 511, 547
BstSFI	CTRYAG	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	106, 773, 795
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	2 cut(s)	257, 551
BstYI	RGATCY	2 cut(s)	257, 551
BstZ17I	GTATAC	1 cut(s)	679
Bsu15I	ATCGAT	1 cut(s)	294
BsuRI	GGCC	4 cut(s)	23, 82, 114, 224
BsuTUI	ATCGAT	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	4 cut(s)	93, 480, 851, 943
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	211, 360
Cac8I	GCNNGC	2 cut(s)	794, 832
CciI	TCATGA	2 cut(s)	352, 688
Cfr13I	GGNCC	1 cut(s)	493
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	2 cut(s)	391, 858
CviAII	CATG	8 cut(s)	34, 130, 353, 488, 497, 594, 652, 689
CviQI	GTAC	2 cut(s)	391, 858
DdeI	CTNAG	5 cut(s)	18, 195, 711, 735, 892
DpnI	GATC	7 cut(s)	14, 181, 259, 270, 357, 553, 650
DpnII	GATC	7 cut(s)	12, 179, 257, 268, 355, 551, 648
DraI	TTTAAA	1 cut(s)	456
DriI	GACNNNNNGTC	1 cut(s)	513
Eam1104I	CTCTTC	1 cut(s)	31
Eam1105I	GACNNNNNGTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	31
EciI	GGCGGA	2 cut(s)	19, 920
Eco130I	CCWWGG	3 cut(s)	33, 912, 933
Eco147I	AGGCCT	2 cut(s)	23, 114
Eco31I	GGTCTC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	493
Eco57I	CTGAAG	2 cut(s)	297, 734
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	4 cut(s)	82, 436, 511, 547
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	3 cut(s)	33, 912, 933
ErhI	CCWWGG	3 cut(s)	33, 912, 933
FaeI	CATG	8 cut(s)	37, 133, 356, 491, 500, 597, 655, 692
FalI	AAGNNNNNCTT	2 cut(s)	704, 736
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	8 cut(s)	33, 129, 352, 487, 496, 593, 651, 688
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	4 cut(s)	95, 171, 762, 784
FokI	GGATG	3 cut(s)	100, 487, 838
Fsp4HI	GCNGC	4 cut(s)	95, 171, 762, 784
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	4 cut(s)	95, 171, 762, 784
GsuI	CTGGAG	1 cut(s)	842
HaeIII	GGCC	4 cut(s)	23, 82, 114, 224
HgaI	GACGC	1 cut(s)	517
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	8 cut(s)	37, 133, 356, 491, 500, 597, 655, 692
HinfI	GANTC	2 cut(s)	126, 175
HphI	GGTGA	2 cut(s)	256, 415
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	2 cut(s)	277, 324
Hpy188III	TCNNGA	3 cut(s)	353, 414, 689
Hpy8I	GTNNAC	1 cut(s)	679
Hpy99I	CGWCG	2 cut(s)	13, 464
HpyAV	CCTTC	3 cut(s)	282, 605, 820
HpyCH4III	ACNGT	2 cut(s)	395, 802
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 770, 789, 902, 938
HpyF3I	CTNAG	5 cut(s)	18, 195, 711, 735, 892
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	8 cut(s)	37, 133, 356, 491, 500, 597, 655, 692
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	7 cut(s)	12, 179, 257, 268, 355, 551, 648
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	3 cut(s)	106, 773, 795
LweI	GCATC	3 cut(s)	286, 618, 928
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	3 cut(s)	527, 704, 816
MalI	GATC	7 cut(s)	14, 181, 259, 270, 357, 553, 650
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	7 cut(s)	12, 179, 257, 268, 355, 551, 648
MboII	GAAGA	4 cut(s)	18, 627, 770, 836
MflI	RGATCY	2 cut(s)	257, 551
MluCI	AATT	2 cut(s)	239, 432
MlyI	GAGTC	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	3 cut(s)	380, 455, 878
MslI	CAYNNNNRTG	1 cut(s)	351
MspR9I	CCNGG	4 cut(s)	84, 438, 513, 549
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	4 cut(s)	84, 438, 513, 549
MwoI	GCNNNNNNNGC	5 cut(s)	29, 770, 789, 902, 938
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	7 cut(s)	12, 179, 257, 268, 355, 551, 648
NlaIII	CATG	8 cut(s)	37, 133, 356, 491, 500, 597, 655, 692
NlaIV	GGNNCC	1 cut(s)	804
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	527
PagI	TCATGA	2 cut(s)	352, 688
PceI	AGGCCT	2 cut(s)	23, 114
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PctI	GAATGC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	502
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	96, 172, 763, 785
Ple19I	CGATCG	1 cut(s)	182
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp6I	CCWGG	4 cut(s)	82, 436, 511, 547
PspGI	CCWGG	4 cut(s)	82, 436, 511, 547
PspN4I	GGNNCC	1 cut(s)	804
PspPI	GGNCC	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	257, 551
PvuI	CGATCG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	392, 859
RsaNI	GTAC	2 cut(s)	391, 858
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	380, 455, 878
SatI	GCNGC	4 cut(s)	95, 171, 762, 784
Sau3AI	GATC	7 cut(s)	12, 179, 257, 268, 355, 551, 648
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	4 cut(s)	84, 438, 513, 549
SetI	ASST	9 cut(s)	99, 283, 392, 405, 495, 529, 539, 622, 736
SfaNI	GCATC	3 cut(s)	286, 618, 928
SfcI	CTRYAG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	2 cut(s)	239, 432
SseBI	AGGCCT	2 cut(s)	23, 114
SsiI	CCGC	3 cut(s)	30, 170, 905
SspI	AATATT	1 cut(s)	564
SspMI	CTAG	1 cut(s)	54
StuI	AGGCCT	2 cut(s)	23, 114
StyD4I	CCNGG	4 cut(s)	82, 436, 511, 547
StyI	CCWWGG	3 cut(s)	33, 912, 933
TaaI	ACNGT	2 cut(s)	395, 802
TaqI	TCGA	3 cut(s)	178, 237, 294
TaqII	GACCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	239, 432
TatI	WGTACW	1 cut(s)	857
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	3 cut(s)	380, 455, 878
Tru9I	TTAA	3 cut(s)	380, 455, 878
TscAI	CASTG	2 cut(s)	211, 367
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	3 cut(s)	94, 761, 783
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	2 cut(s)	118, 705
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	2 cut(s)	211, 367
Van91I	CCANNNNNTGG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	432
XmiI	GTMKAC	1 cut(s)	678
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.