Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011321

Physical Location & Seq

Genomic Coordinates Reverse (-)

19022560 .. 19028491

Gene Structure 5932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G198300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCAGATGATCTCCAAGGCCTCTTGTGCCATGGCCTCCTTCCCATGCTCTAAGGGGAGGAGTGGACTCTGTGTATGGCCTGGAATGAGACAGCTTTGCCTTCGAAAAGGCCTTTTGTATGGATTCATGCAATTATTGTCCACACCATTAAAAACTCTGCGTGGAGGAGCTAGTCGATCGCTTAGAGTCGCTAAATTTTGCAGTGTTGTTAATATGTCACCCTCATTACATATTGAATTGGTACCATGTCTTAGAGATAACTATGCATATCTTTTACATGATGTGGACACTGGCACTGTTGGTGTTGTTGATCCTTCTGAAGCTGTACCTATTATAGATGCTTTGAGTAAGAAAAACCGAAATCTGACATACATACTGAACACTCATCATCATCATGATCATACTGGTGGTAATGCTGAGTTAAAAGCAAGGTACGGTGCAAAGGTGATTGGTTCAGGAATAGACAAGGATAGAATTCCTGGCATTGACATTGTTTTGAATGATGGCGATAAGTGGATGTTTGCTGGCCATGAGGTGCATGTTATGGAGACTCCTGGTCATACTAGAGGTCACATTAGCTTCTACTTTCCTGGATCAGGGGCAATTTTTACAGGAGACACTTTGTTCAGCTTATCATGTGGCAAGTTGTTTGAAGGAACACCTGAGCAGATGCAATCTTCCCTTTCAAAGATCATGTCTTTGCCAGATGATACAGATATATACTGTGGTCATGAGTATACATTGAGTAACTCAAAGTTTGCCTTGTCTATAGAACCTGAGAATGAGGCACTTCAGTCCTATGCAGCACATGTCACCCATCTTCGCAACAAGGGCATGCCTACGGTTCCAACCACATTAAAACTGGAAAAGGCATGCAATCCTTTTCTTCGCACTTCAAGCATAGAGATTCGGCAATCGTTGAATATTCCAGCCACTGCAAATGATGCAGAAGCCTTGGGTGTCATACGCCAGGCAAAGGATACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004416 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008270 GO:0008800 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010033 GO:0010243 GO:0016787 GO:0016788 GO:0016790 GO:0016810 GO:0016812 GO:0034059 GO:0036293 GO:0042221 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070482 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

HAGH_C Lactamase_B

Protein Analysis

330

Amino Acids

36.0

Weight (kDa)

8.05

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06130 AT1G06130 AT2G31350 AT2G43430 AT2G43430
fragaria_vesca	FvH4_3g41770 FvH4_3g41770
malus_domestica	MD04G1045200.v1.1
prunus_persica	Prupe.1G198300_v2.0.a1 Prupe.1G198300_v2.0.a1
pyrus_communis	pycom04g03890
rosa_chinensis	RchiOBHm_Chr5g0074861
rosa_laevigata	RLG00000036511
rosa_multiflora	Rmu_sc0003945.1_g000008 Rmu_sc0012777.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006720
rosa_rugosa	Rorug05G0435000
rosa_samantha	Rh5CG537400 Rh5DG525800
rosa_wichuraiana	Rw5G045610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	737
AclWI	GGATC	2 cut(s)	305, 601
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	2 cut(s)	194, 474
AcuI	CTGAAG	2 cut(s)	339, 776
AfaI	GTAC	3 cut(s)	243, 327, 434
AfiI	CCNNNNNNNGG	2 cut(s)	596, 976
AflIII	ACRYGT	1 cut(s)	808
AgsI	TTSAA	6 cut(s)	236, 499, 653, 687, 897, 922
AhdI	GACNNNNNGTC	1 cut(s)	555
AjnI	CCWGG	5 cut(s)	79, 478, 553, 589, 969
AluBI	AGCT	5 cut(s)	94, 170, 323, 579, 630
AluI	AGCT	5 cut(s)	94, 170, 323, 579, 630
Alw26I	GTCTC	3 cut(s)	82, 542, 609
AlwI	GGATC	2 cut(s)	305, 601
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	5 cut(s)	18, 33, 77, 109, 526
ApeKI	GCWGC	1 cut(s)	803
ApoI	RAATTY	2 cut(s)	194, 474
ArsI	GACNNNNNNTTYG	2 cut(s)	680, 712
Asp718I	GGTACC	1 cut(s)	241
AsuHPI	GGTGA	3 cut(s)	210, 457, 805
AsuII	TTCGAA	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	815
BccI	CCATC	2 cut(s)	497, 825
BciT130I	CCWGG	5 cut(s)	81, 480, 555, 591, 971
BciVI	GTATCC	1 cut(s)	973
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	3 cut(s)	82, 542, 609
BfaI	CTAG	2 cut(s)	171, 564
BfmI	CTRYAG	1 cut(s)	768
BfuI	GTATCC	1 cut(s)	973
BisI	GCNGC	1 cut(s)	804
BlsI	GCNGC	1 cut(s)	805
Bme1390I	CCNGG	5 cut(s)	81, 480, 555, 591, 971
BmeRI	GACNNNNNGTC	1 cut(s)	555
BmiI	GGNNCC	2 cut(s)	243, 846
BmrFI	CCNGG	5 cut(s)	81, 480, 555, 591, 971
BmsI	GCATC	3 cut(s)	328, 660, 934
Bpu10I	CCTNAGC	1 cut(s)	663
Bpu14I	TTCGAA	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	15, 30, 954
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 976
Bse1I	ACTGG	3 cut(s)	295, 409, 867
BseBI	CCWGG	5 cut(s)	81, 480, 555, 591, 971
BseDI	CCNNGG	3 cut(s)	15, 30, 954
BseGI	GGATG	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	596, 976
BseMII	CTCAG	3 cut(s)	408, 654, 768
BseNI	ACTGG	3 cut(s)	295, 409, 867
BseRI	GAGGAG	2 cut(s)	73, 180
BseXI	GCAGC	1 cut(s)	815
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	5 cut(s)	20, 35, 79, 111, 528
BshNI	GGYRCC	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	596, 976
BsmAI	GTCTC	3 cut(s)	82, 542, 609
BsnI	GGCC	5 cut(s)	20, 35, 79, 111, 528
Bsp119I	TTCGAA	1 cut(s)	103
Bsp143I	GATC	6 cut(s)	9, 176, 310, 397, 593, 690
Bsp19I	CCATGG	1 cut(s)	30
BspANI	GGCC	5 cut(s)	20, 35, 79, 111, 528
BspCNI	CTCAG	3 cut(s)	409, 655, 769
BspHI	TCATGA	2 cut(s)	394, 730
BspLI	GGNNCC	2 cut(s)	243, 846
BspPI	GGATC	2 cut(s)	305, 601
BspT104I	TTCGAA	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	241
BsrI	ACTGG	3 cut(s)	295, 409, 867
BssECI	CCNNGG	3 cut(s)	15, 30, 954
BssMI	GATC	6 cut(s)	9, 176, 310, 397, 593, 690
BssNAI	GTATAC	1 cut(s)	738
BssT1I	CCWWGG	3 cut(s)	15, 30, 954
Bst1107I	GTATAC	1 cut(s)	738
Bst2UI	CCWGG	5 cut(s)	81, 480, 555, 591, 971
Bst4CI	ACNGT	4 cut(s)	298, 437, 725, 844
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	3 cut(s)	526, 836, 874
BstDEI	CTNAG	6 cut(s)	51, 182, 251, 417, 663, 777
BstDSI	CCRYGG	1 cut(s)	30
BstENI	CCTNNNNNAGG	1 cut(s)	594
BstF5I	GGATG	1 cut(s)	522
BstKTI	GATC	6 cut(s)	12, 179, 313, 400, 596, 693
BstMAI	GTCTC	3 cut(s)	82, 542, 609
BstMBI	GATC	6 cut(s)	9, 176, 310, 397, 593, 690
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 831, 897, 944
BstNI	CCWGG	5 cut(s)	81, 480, 555, 591, 971
BstNSI	RCATGY	4 cut(s)	542, 812, 838, 876
BstSCI	CCNGG	5 cut(s)	79, 478, 553, 589, 969
BstSFI	CTRYAG	1 cut(s)	768
BstV1I	GCAGC	1 cut(s)	815
BstZ17I	GTATAC	1 cut(s)	738
BsuI	GTATCC	1 cut(s)	973
BsuRI	GGCC	5 cut(s)	20, 35, 79, 111, 528
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	522
BtsI	GCAGTG	2 cut(s)	208, 933
BtsIMutI	CAGTG	4 cut(s)	208, 288, 294, 933
Cac8I	GCNNGC	3 cut(s)	526, 836, 874
CaiI	CAGNNNCTG	1 cut(s)	935
CciI	TCATGA	2 cut(s)	394, 730
Csp6I	GTAC	3 cut(s)	242, 326, 433
CviQI	GTAC	3 cut(s)	242, 326, 433
DdeI	CTNAG	6 cut(s)	51, 182, 251, 417, 663, 777
DpnI	GATC	6 cut(s)	11, 178, 312, 399, 595, 692
DpnII	GATC	6 cut(s)	9, 176, 310, 397, 593, 690
DriI	GACNNNNNGTC	1 cut(s)	555
EaeI	YGGCCR	1 cut(s)	526
Eam1105I	GACNNNNNGTC	1 cut(s)	555
Eco130I	CCWWGG	3 cut(s)	15, 30, 954
Eco147I	AGGCCT	2 cut(s)	20, 111
Eco57I	CTGAAG	2 cut(s)	339, 776
EcoNI	CCTNNNNNAGG	1 cut(s)	594
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	5 cut(s)	79, 478, 553, 589, 969
EcoT14I	CCWWGG	3 cut(s)	15, 30, 954
EcoT22I	ATGCAT	1 cut(s)	268
ErhI	CCWWGG	3 cut(s)	15, 30, 954
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	737
Fnu4HI	GCNGC	1 cut(s)	804
FokI	GGATG	1 cut(s)	529
Fsp4HI	GCNGC	1 cut(s)	804
FspBI	CTAG	2 cut(s)	171, 564
GluI	GCNGC	1 cut(s)	804
HaeIII	GGCC	5 cut(s)	20, 35, 79, 111, 528
HinfI	GANTC	5 cut(s)	66, 123, 186, 550, 907
HphI	GGTGA	3 cut(s)	210, 457, 805
Hpy166II	GTNNAC	4 cut(s)	65, 141, 286, 738
Hpy188I	TCNGA	2 cut(s)	319, 366
Hpy188III	TCNNGA	3 cut(s)	395, 456, 731
Hpy8I	GTNNAC	4 cut(s)	65, 141, 286, 738
HpyAV	CCTTC	4 cut(s)	49, 110, 324, 647
HpyCH4III	ACNGT	4 cut(s)	298, 437, 725, 844
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 831, 897, 944
HpyF3I	CTNAG	6 cut(s)	51, 182, 251, 417, 663, 777
KpnI	GGTACC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	6 cut(s)	9, 176, 310, 397, 593, 690
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	1 cut(s)	815
LweI	GCATC	3 cut(s)	328, 660, 934
MaeI	CTAG	2 cut(s)	171, 564
MaeIII	GTNAC	4 cut(s)	216, 569, 746, 811
MalI	GATC	6 cut(s)	11, 178, 312, 399, 595, 692
MboI	GATC	6 cut(s)	9, 176, 310, 397, 593, 690
MboII	GAAGA	3 cut(s)	669, 812, 878
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	5 cut(s)	131, 194, 236, 474, 603
MluNI	TGGCCA	1 cut(s)	528
MlyI	GAGTC	3 cut(s)	60, 195, 544
MmeI	TCCRAC	1 cut(s)	872
MnlI	CCTC	8 cut(s)	31, 46, 51, 158, 232, 526, 560, 778
Mox20I	TGGCCA	1 cut(s)	528
Mph1103I	ATGCAT	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	4 cut(s)	149, 210, 422, 857
MslI	CAYNNNNRTG	2 cut(s)	393, 405
Msp20I	TGGCCA	1 cut(s)	528
MspR9I	CCNGG	5 cut(s)	81, 480, 555, 591, 971
MvaI	CCWGG	5 cut(s)	81, 480, 555, 591, 971
MwoI	GCNNNNNNNGC	4 cut(s)	26, 831, 897, 944
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	6 cut(s)	9, 176, 310, 397, 593, 690
NlaIV	GGNNCC	2 cut(s)	243, 846
NmuCI	GTSAC	3 cut(s)	216, 569, 811
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	4 cut(s)	542, 812, 838, 876
NspV	TTCGAA	1 cut(s)	103
PaeI	GCATGC	2 cut(s)	838, 876
PagI	TCATGA	2 cut(s)	394, 730
PceI	AGGCCT	2 cut(s)	20, 111
PciI	ACATGT	1 cut(s)	808
PfeI	GAWTC	2 cut(s)	123, 907
PfoI	TCCNGGA	1 cut(s)	589
PkrI	GCNGC	1 cut(s)	805
Ple19I	CGATCG	1 cut(s)	179
PleI	GAGTC	3 cut(s)	60, 194, 544
PpsI	GAGTC	3 cut(s)	60, 194, 544
PscI	ACATGT	1 cut(s)	808
Psp6I	CCWGG	5 cut(s)	79, 478, 553, 589, 969
PspGI	CCWGG	5 cut(s)	79, 478, 553, 589, 969
PspN4I	GGNNCC	2 cut(s)	243, 846
PstNI	CAGNNNCTG	1 cut(s)	935
PvuI	CGATCG	1 cut(s)	179
RsaI	GTAC	3 cut(s)	243, 327, 434
RsaNI	GTAC	3 cut(s)	242, 326, 433
RseI	CAYNNNNRTG	2 cut(s)	393, 405
SaqAI	TTAA	4 cut(s)	149, 210, 422, 857
SatI	GCNGC	1 cut(s)	804
Sau3AI	GATC	6 cut(s)	9, 176, 310, 397, 593, 690
SchI	GAGTC	3 cut(s)	60, 195, 544
ScrFI	CCNGG	5 cut(s)	81, 480, 555, 591, 971
SfaNI	GCATC	3 cut(s)	328, 660, 934
SfcI	CTRYAG	1 cut(s)	768
SfuI	TTCGAA	1 cut(s)	103
SmiMI	CAYNNNNRTG	2 cut(s)	393, 405
SphI	GCATGC	2 cut(s)	838, 876
Sse9I	AATT	5 cut(s)	131, 194, 236, 474, 603
SseBI	AGGCCT	2 cut(s)	20, 111
SspI	AATATT	1 cut(s)	925
SspMI	CTAG	2 cut(s)	171, 564
StuI	AGGCCT	2 cut(s)	20, 111
StyD4I	CCNGG	5 cut(s)	79, 478, 553, 589, 969
StyI	CCWWGG	3 cut(s)	15, 30, 954
TaaI	ACNGT	4 cut(s)	298, 437, 725, 844
TaqI	TCGA	2 cut(s)	103, 175
TasI	AATT	5 cut(s)	131, 194, 236, 474, 603
TfiI	GAWTC	2 cut(s)	123, 907
Tru1I	TTAA	4 cut(s)	149, 210, 422, 857
Tru9I	TTAA	4 cut(s)	149, 210, 422, 857
TscAI	CASTG	4 cut(s)	208, 295, 301, 940
TseFI	GTSAC	3 cut(s)	216, 569, 811
TseI	GCWGC	1 cut(s)	803
Tsp45I	GTSAC	3 cut(s)	216, 569, 811
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	4 cut(s)	208, 295, 301, 940
XagI	CCTNNNNNAGG	1 cut(s)	594
XapI	RAATTY	2 cut(s)	194, 474
XceI	RCATGY	4 cut(s)	542, 812, 838, 876
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XmiI	GTMKAC	1 cut(s)	737
XspI	CTAG	2 cut(s)	171, 564
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.