AT1G06510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011396
Physical Location & Seq
Forward (+)
1992229 .. 1993841
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06510.1

Sequence Viewer

Length: 834 bp
ATGGTGACGACGACCATCGGCGGAGTTCCGGTGGTGATTGCTCAGTCTCGGAGGATTCCAACGAGCCTGAGATGCTTCTCTGCCACCGCAAATTCTGACCTTCTTCGCTCCCAGCTTGATCGGCTTCACGCGGAGGCAGAGTCCACTCGTGCCAAAGCAAACAGTAATAGGTTGAGACTTTTGAGATTATCTGAGGCTGCAGAGAATCTACGGGAACAAGCAGCTGTCAATGTTCGAACAGGGAAAGAGAATGATGCCAGAGATCTACTTCTTCAGAAGAAAAAAGTTATGCAAGCTTTGGACAAGGCTAAAGCTCGTATCGAGTTGCTCGATACGCTTTCTTCCAAACTTAACGAGGCAATATCTGTCAAGGAAACACAGCTGATAGGCAATATATCTTTGGATCTCGAAGAGGATGGAGAGAATACTTCAGGTGGTATCCACATTGTATCGCCAAAGCCCGAATCTACTGAAGACGGGGTCGAAAATGACCACACTCACTTGGATTCTGAGGGAATTCAACTTATTGAAAGGAATGTTGAGGATTACCAAGAACTTCTTGATACCAATAATAATGTACTAGAAGATGTTTCAATAGGTAGCATCCTGAAAGAAGTGTCTTCTTATGAATCTTTCTTGGAAAATTTAGACCAGAAACTTAGCAGAATCGAAGCTGAACTAGTTACTGTTGTAAATGTTGCATCCTTGGTGCTTAATCATGAAGATAAACCCAAGAATCTTAAGGTTCAGCAGACTGCAGAAATTCTTGAAGAGATTCGTCGTGTGAGGGAAAGAATCGCAAATATCATTTGCAAAGAGGCAAACATCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

30.81

Weight (kDa)

5.06

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06510
fragaria_vesca FvH4_6g38360 FvH4_6g38360
malus_domestica MD09G1150800.v1.1 MD17G1138200.v1.1
prunus_persica Prupe.3G174200_v2.0.a1
pyrus_communis pycom09g07060 pycom17g13140
rosa_chinensis RchiOBHm_Chr2g0151671
rosa_laevigata RLG00000020567
rosa_multiflora Rmu_sc0005294.1_g000050
rosa_roxburghii Rroxscaffold_2G00096270
rosa_rugosa Rorug02G0427700 Rorug02G0427800 Rorug02G0427900
rosa_samantha Rh2AG488600 Rh2BG501300 Rh2CG475100 Rh2DG512400
rosa_wichuraiana Rw2G040070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 131
AciI CCGC 3 cut(s) 21, 87, 131
AclWI GGATC 1 cut(s) 411
AcsI RAATTY 4 cut(s) 91, 516, 643, 762
AcuI CTGAAG 3 cut(s) 257, 414, 492
AfaI GTAC 1 cut(s) 579
AflII CTTAAG 1 cut(s) 740
AgsI TTSAA 4 cut(s) 521, 530, 594, 770
AhlI ACTAGT 1 cut(s) 679
AluBI AGCT 6 cut(s) 115, 224, 296, 314, 382, 674
AluI AGCT 6 cut(s) 115, 224, 296, 314, 382, 674
Alw26I GTCTC 2 cut(s) 51, 169
AlwI GGATC 1 cut(s) 411
ApeKI GCWGC 2 cut(s) 197, 221
ApoI RAATTY 4 cut(s) 91, 516, 643, 762
Asp700I GAANNNNTTC 1 cut(s) 774
AsuHPI GGTGA 2 cut(s) 16, 46
AsuII TTCGAA 1 cut(s) 235
BauI CACGAG 1 cut(s) 147
BbsI GAAGAC 2 cut(s) 480, 612
BbvI GCAGC 2 cut(s) 184, 233
BccI CCATC 2 cut(s) 23, 410
BciVI GTATCC 1 cut(s) 449
BcoDI GTCTC 2 cut(s) 51, 169
BcuI ACTAGT 1 cut(s) 679
BfaI CTAG 2 cut(s) 581, 680
BfmI CTRYAG 2 cut(s) 198, 756
BfrI CTTAAG 1 cut(s) 740
BfuI GTATCC 1 cut(s) 449
BglII AGATCT 1 cut(s) 262
BisI GCNGC 2 cut(s) 198, 222
BlsI GCNGC 2 cut(s) 199, 223
BmsI GCATC 4 cut(s) 62, 244, 612, 710
BpiI GAAGAC 2 cut(s) 480, 612
Bpu14I TTCGAA 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 705
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 125, 155
BseDI CCNNGG 1 cut(s) 705
BseGI GGATG 3 cut(s) 421, 603, 701
BseMII CTCAG 4 cut(s) 56, 59, 183, 501
BseXI GCAGC 2 cut(s) 184, 233
BseYI CCCAGC 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 51, 169
Bsp119I TTCGAA 1 cut(s) 235
Bsp143I GATC 3 cut(s) 118, 262, 403
BspACI CCGC 3 cut(s) 21, 87, 131
BspCNI CTCAG 4 cut(s) 55, 60, 184, 502
BspFNI CGCG 1 cut(s) 131
BspHI TCATGA 1 cut(s) 718
BspMAI CTGCAG 2 cut(s) 202, 760
BspPI GGATC 1 cut(s) 411
BspT104I TTCGAA 1 cut(s) 235
BspTI CTTAAG 1 cut(s) 740
BssECI CCNNGG 1 cut(s) 705
BssMI GATC 3 cut(s) 118, 262, 403
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 705
Bst2BI CACGAG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 164, 688
Bst6I CTCTTC 2 cut(s) 405, 765
BstAFI CTTAAG 1 cut(s) 740
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 5 cut(s) 42, 68, 192, 510, 659
BstF5I GGATG 3 cut(s) 421, 603, 701
BstFNI CGCG 1 cut(s) 131
BstKTI GATC 3 cut(s) 121, 265, 406
BstMAI GTCTC 2 cut(s) 51, 169
BstMBI GATC 3 cut(s) 118, 262, 403
BstMWI GCNNNNNNNGC 3 cut(s) 72, 121, 334
BstSFI CTRYAG 2 cut(s) 198, 756
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 184, 233
BstV2I GAAGAC 2 cut(s) 480, 612
BstX2I RGATCY 2 cut(s) 262, 403
BstYI RGATCY 2 cut(s) 262, 403
BsuI GTATCC 1 cut(s) 449
BtsCI GGATG 3 cut(s) 421, 603, 701
Cac8I GCNNGC 1 cut(s) 294
CciI TCATGA 1 cut(s) 718
Csp6I GTAC 1 cut(s) 578
CviAII CATG 1 cut(s) 719
CviQI GTAC 1 cut(s) 578
DdeI CTNAG 5 cut(s) 42, 68, 192, 510, 659
DpnI GATC 3 cut(s) 120, 264, 405
DpnII GATC 3 cut(s) 118, 262, 403
Eam1104I CTCTTC 2 cut(s) 405, 765
EarI CTCTTC 2 cut(s) 405, 765
EciI GGCGGA 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 705
Eco57I CTGAAG 3 cut(s) 257, 414, 492
EcoRI GAATTC 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 1 cut(s) 722
FaiI YATR 4 cut(s) 290, 395, 627, 720
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FatI CATG 1 cut(s) 718
Fnu4HI GCNGC 2 cut(s) 198, 222
FokI GGATG 3 cut(s) 428, 590, 688
Fsp4HI GCNGC 2 cut(s) 198, 222
FspBI CTAG 2 cut(s) 581, 680
GluI GCNGC 2 cut(s) 198, 222
GsaI CCCAGC 1 cut(s) 115
HapII CCGG 1 cut(s) 29
Hin1II CATG 1 cut(s) 722
HindIII AAGCTT 1 cut(s) 294
HpaII CCGG 1 cut(s) 29
HphI GGTGA 2 cut(s) 16, 46
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 5 cut(s) 51, 97, 193, 276, 511
Hpy188III TCNNGA 5 cut(s) 407, 560, 607, 719, 767
Hpy8I GTNNAC 1 cut(s) 144
Hpy99I CGWCG 2 cut(s) 13, 783
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 2 cut(s) 164, 688
HpyCH4V TGCA 5 cut(s) 200, 292, 701, 758, 813
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 121, 334
HpyF3I CTNAG 5 cut(s) 42, 68, 192, 510, 659
Hsp92II CATG 1 cut(s) 722
Kzo9I GATC 3 cut(s) 118, 262, 403
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 8 cut(s) 42, 80, 125, 225, 271, 417, 620, 665
Lsp1109I GCAGC 2 cut(s) 184, 233
LweI GCATC 4 cut(s) 62, 244, 612, 710
MaeI CTAG 2 cut(s) 581, 680
MaeIII GTNAC 2 cut(s) 4, 682
MalI GATC 3 cut(s) 120, 264, 405
MboI GATC 3 cut(s) 118, 262, 403
MflI RGATCY 2 cut(s) 262, 403
MluCI AATT 4 cut(s) 91, 516, 643, 762
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 9 cut(s) 45, 127, 187, 349, 406, 505, 535, 780, 811
MroXI GAANNNNTTC 1 cut(s) 774
MseI TTAA 3 cut(s) 351, 714, 741
MspA1I CMGCKG 2 cut(s) 224, 382
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 3 cut(s) 72, 121, 334
NdeII GATC 3 cut(s) 118, 262, 403
NlaIII CATG 1 cut(s) 722
NmuCI GTSAC 1 cut(s) 4
NspV TTCGAA 1 cut(s) 235
PagI TCATGA 1 cut(s) 718
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 9 cut(s) 55, 205, 464, 506, 629, 666, 736, 775, 795
PflFI GACNNNGTC 1 cut(s) 479
PkrI GCNGC 2 cut(s) 199, 223
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 111
PstI CTGCAG 2 cut(s) 202, 760
PsuI RGATCY 2 cut(s) 262, 403
PsyI GACNNNGTC 1 cut(s) 479
PvuII CAGCTG 2 cut(s) 224, 382
RsaI GTAC 1 cut(s) 579
RsaNI GTAC 1 cut(s) 578
SaqAI TTAA 3 cut(s) 351, 714, 741
SatI GCNGC 2 cut(s) 198, 222
Sau3AI GATC 3 cut(s) 118, 262, 403
SchI GAGTC 1 cut(s) 149
SfaNI GCATC 4 cut(s) 62, 244, 612, 710
SfcI CTRYAG 2 cut(s) 198, 756
SfuI TTCGAA 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
SpeI ACTAGT 1 cut(s) 679
Sse9I AATT 4 cut(s) 91, 516, 643, 762
SsiI CCGC 3 cut(s) 21, 87, 131
SspMI CTAG 2 cut(s) 581, 680
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 2 cut(s) 164, 688
TaqI TCGA 6 cut(s) 235, 321, 330, 408, 483, 669
TasI AATT 4 cut(s) 91, 516, 643, 762
TatI WGTACW 1 cut(s) 577
TfiI GAWTC 9 cut(s) 55, 205, 464, 506, 629, 666, 736, 775, 795
Tru1I TTAA 3 cut(s) 351, 714, 741
Tru9I TTAA 3 cut(s) 351, 714, 741
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 197, 221
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 642, 735
Tth111I GACNNNGTC 1 cut(s) 479
Vha464I CTTAAG 1 cut(s) 740
XapI RAATTY 4 cut(s) 91, 516, 643, 762
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 2 cut(s) 581, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.