Rorug02G0427800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011396
Physical Location & Seq
Forward (+)
54865254 .. 54866433
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0427800.1

Sequence Viewer

Length: 765 bp
ATGACAGACAGAGTCTACCCATCTGCCAAGCCCGCCACCAACGGCGCGGCCGCCCCAAACCCAGCCTTCCCCGCCACGAAAGCGCAGCTCTACAGCAACGCGCGCCCTGCCTACCGCCCTCAACCCCACCGCCACCGCCGCAGCCGCAGCCGCTGCTGCTCTTGCTGCCTCTGGATCATTTTCCTTCTCATCCTCCAAGTCTTCATTGGAGCCATATGCGGCGCTGTTTTCTACCTCATATACAAGCCCCAACGCCCGACCTTCTCCGTCACCTCCCTCCAGCTCTCCACCTTCAACATCACCTCCTCCAACCAGCTCACCTCCCGTTTTGACATCAACGTCACCGGCCGGAACCCCAACAAGAAACTCGTCTTCTTCTACAACCCCATCGCCATTTCCATCCTCTCAAAAGACGATATAGACGTCGGTGACGGATCCATACCGGCTTTCACTCACGGAAAGAAGAACACGACTCTCCTGAAGGCTAGGATTACAAGCAGCGGCAAACCACTCGAGAGCAGTGACGTCACCACGTTGAAGGCTGAGATGAAGAGCAAAGCTGGGTTGGGACTGAAGGTGAGGTTGGACACCAAAGTGAGAGTGAAGGTTTTCGGGGTGAAGACTCCAAAAATCGGAATTAGGGTTCATTGCGAAGGGATTAAGGTTACTTCTCTTCCTACTGCAAAAGCTGCTGCGAAGGCTTCGACTAGTAATGCCAAGTGCAAGGTTGATGTTAGAGTCAAGATCTGGAAATGGACTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

27.9

Weight (kDa)

10.32

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 114 - 217 2.6e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06510
fragaria_vesca FvH4_6g38360 FvH4_6g38360
malus_domestica MD09G1150800.v1.1 MD17G1138200.v1.1
prunus_persica Prupe.3G174200_v2.0.a1
pyrus_communis pycom09g07060 pycom17g13140
rosa_chinensis RchiOBHm_Chr2g0151671
rosa_laevigata RLG00000020567
rosa_multiflora Rmu_sc0005294.1_g000050
rosa_roxburghii Rroxscaffold_2G00096270
rosa_rugosa Rorug02G0427700 Rorug02G0427800 Rorug02G0427900
rosa_samantha Rh2AG488600 Rh2BG501300 Rh2CG475100 Rh2DG512400
rosa_wichuraiana Rw2G040070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AatII GACGTC 2 cut(s) 426, 528
AccI GTMKAC 1 cut(s) 15
AccII CGCG 3 cut(s) 47, 101, 103
AclWI GGATC 3 cut(s) 182, 429, 442
AcoI YGGCCR 2 cut(s) 48, 346
AcuI CTGAAG 2 cut(s) 500, 593
AcyI GRCGYC 2 cut(s) 423, 525
AfiI CCNNNNNNNGG 1 cut(s) 632
AgsI TTSAA 2 cut(s) 295, 538
AhlI ACTAGT 1 cut(s) 707
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AleI CACNNNNGTG 1 cut(s) 593
AloI GAACNNNNNNTCC 2 cut(s) 627, 659
AluBI AGCT 5 cut(s) 88, 283, 316, 560, 689
AluI AGCT 5 cut(s) 88, 283, 316, 560, 689
AlwI GGATC 3 cut(s) 182, 429, 442
AlwNI CAGNNNCTG 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 512
AoxI GGCC 2 cut(s) 48, 346
ApeKI GCWGC 9 cut(s) 85, 141, 147, 153, 156, 165, 498, 689, 692
Asp700I GAANNNNTTC 1 cut(s) 608
AspLEI GCGC 5 cut(s) 47, 85, 103, 105, 224
AsuHPI GGTGA 8 cut(s) 262, 292, 310, 334, 440, 520, 589, 628
AvaI CYCGRG 1 cut(s) 512
BamHI GGATCC 1 cut(s) 434
BbsI GAAGAC 3 cut(s) 193, 364, 626
BbvI GCAGC 9 cut(s) 97, 140, 143, 152, 153, 159, 510, 676, 679
BccI CCATC 3 cut(s) 28, 395, 407
BceAI ACGGC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 493, 527
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 2 cut(s) 486, 708
BfmI CTRYAG 1 cut(s) 91
BfoI RGCGCY 1 cut(s) 225
BglII AGATCT 1 cut(s) 744
BmeT110I CYCGRG 1 cut(s) 512
BmiI GGNNCC 3 cut(s) 211, 353, 436
BpiI GAAGAC 3 cut(s) 193, 364, 626
BpmI CTGGAG 1 cut(s) 263
BsaHI GRCGYC 2 cut(s) 423, 525
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse118I RCCGGY 2 cut(s) 344, 442
Bse3DI GCAATG 1 cut(s) 646
BseGI GGATG 2 cut(s) 189, 399
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMI GCAATG 1 cut(s) 646
BseMII CTCAG 1 cut(s) 534
BsePI GCGCGC 1 cut(s) 101
BseRI GAGGAG 1 cut(s) 295
BseX3I CGGCCG 2 cut(s) 48, 346
BseXI GCAGC 9 cut(s) 97, 140, 143, 152, 153, 159, 510, 676, 679
BseYI CCCAGC 2 cut(s) 61, 560
Bsh1236I CGCG 3 cut(s) 47, 101, 103
Bsh1285I CGRYCG 2 cut(s) 51, 349
BshFI GGCC 2 cut(s) 50, 348
BsiEI CGRYCG 2 cut(s) 51, 349
BsiHKCI CYCGRG 1 cut(s) 512
BsiSI CCGG 3 cut(s) 345, 349, 443
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 2 cut(s) 50, 348
BsoBI CYCGRG 1 cut(s) 512
Bsp143I GATC 3 cut(s) 174, 434, 744
BspANI GGCC 2 cut(s) 50, 348
BspCNI CTCAG 1 cut(s) 535
BspFNI CGCG 3 cut(s) 47, 101, 103
BspLI GGNNCC 3 cut(s) 211, 353, 436
BspPI GGATC 3 cut(s) 182, 429, 442
BspQI GCTCTTC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 646
BsrFI RCCGGY 2 cut(s) 344, 442
BssAI RCCGGY 2 cut(s) 344, 442
BssHII GCGCGC 1 cut(s) 101
BssMI GATC 3 cut(s) 174, 434, 744
BssNI GRCGYC 2 cut(s) 423, 525
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 2 cut(s) 545, 678
BstACI GRCGYC 2 cut(s) 423, 525
BstAPI GCANNNNNTGC 2 cut(s) 153, 689
BstC8I GCNNGC 2 cut(s) 33, 103
BstDEI CTNAG 1 cut(s) 543
BstF5I GGATG 2 cut(s) 189, 399
BstFNI CGCG 3 cut(s) 47, 101, 103
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 5 cut(s) 47, 85, 103, 105, 224
BstKTI GATC 3 cut(s) 177, 437, 747
BstMBI GATC 3 cut(s) 174, 434, 744
BstMCI CGRYCG 2 cut(s) 51, 349
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 3 cut(s) 47, 101, 103
BstV1I GCAGC 9 cut(s) 97, 140, 143, 152, 153, 159, 510, 676, 679
BstV2I GAAGAC 3 cut(s) 193, 364, 626
BstX2I RGATCY 2 cut(s) 434, 744
BstYI RGATCY 2 cut(s) 434, 744
BstZI CGGCCG 2 cut(s) 48, 346
BsuRI GGCC 2 cut(s) 50, 348
BtgZI GCGATG 1 cut(s) 373
BtsCI GGATG 2 cut(s) 189, 399
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 33, 103
CaiI CAGNNNCTG 1 cut(s) 153
CciNI GCGGCCGC 1 cut(s) 48
CfoI GCGC 5 cut(s) 47, 85, 103, 105, 224
Cfr10I RCCGGY 2 cut(s) 344, 442
DdeI CTNAG 1 cut(s) 543
DpnI GATC 3 cut(s) 176, 436, 746
DpnII GATC 3 cut(s) 174, 434, 744
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 2 cut(s) 48, 346
EagI CGGCCG 2 cut(s) 48, 346
Eam1104I CTCTTC 2 cut(s) 545, 678
EarI CTCTTC 2 cut(s) 545, 678
EclXI CGGCCG 2 cut(s) 48, 346
Eco52I CGGCCG 2 cut(s) 48, 346
Eco57I CTGAAG 2 cut(s) 500, 593
Eco88I CYCGRG 1 cut(s) 512
FaiI YATR 7 cut(s) 215, 217, 239, 241, 419, 440, 763
FaqI GGGAC 1 cut(s) 582
FauI CCCGC 2 cut(s) 40, 79
FauNDI CATATG 1 cut(s) 215
FblI GTMKAC 1 cut(s) 15
FokI GGATG 2 cut(s) 176, 386
FspBI CTAG 2 cut(s) 486, 708
GlaI GCGC 5 cut(s) 46, 84, 102, 104, 223
GsaI CCCAGC 2 cut(s) 65, 564
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 2 cut(s) 50, 348
HapII CCGG 3 cut(s) 345, 349, 443
HhaI GCGC 5 cut(s) 47, 85, 103, 105, 224
Hin1I GRCGYC 2 cut(s) 423, 525
Hin6I GCGC 5 cut(s) 45, 83, 101, 103, 222
HinP1I GCGC 5 cut(s) 45, 83, 101, 103, 222
HinfI GANTC 4 cut(s) 12, 472, 622, 738
HpaII CCGG 3 cut(s) 345, 349, 443
HphI GGTGA 8 cut(s) 262, 292, 310, 334, 440, 520, 589, 628
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 635
Hpy188III TCNNGA 5 cut(s) 172, 478, 514, 742, 748
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 428
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4IV ACGT 4 cut(s) 339, 423, 525, 533
HpyCH4V TGCA 2 cut(s) 683, 723
HpyF3I CTNAG 1 cut(s) 543
HpySE526I ACGT 4 cut(s) 339, 423, 525, 533
Hsp92I GRCGYC 2 cut(s) 423, 525
HspAI GCGC 5 cut(s) 45, 83, 101, 103, 222
Kzo9I GATC 3 cut(s) 174, 434, 744
LguI GCTCTTC 1 cut(s) 545
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 9 cut(s) 97, 140, 143, 152, 153, 159, 510, 676, 679
MaeI CTAG 2 cut(s) 486, 708
MaeII ACGT 4 cut(s) 339, 423, 525, 533
MaeIII GTNAC 6 cut(s) 268, 340, 428, 521, 526, 664
MalI GATC 3 cut(s) 176, 436, 746
MboI GATC 3 cut(s) 174, 434, 744
MboII GAAGA 7 cut(s) 193, 364, 367, 475, 562, 631, 665
MflI RGATCY 2 cut(s) 434, 744
MluCI AATT 1 cut(s) 636
MlyI GAGTC 4 cut(s) 21, 466, 616, 747
MmeI TCCRAC 2 cut(s) 333, 564
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 1 cut(s) 660
MslI CAYNNNNRTG 1 cut(s) 593
MspA1I CMGCKG 2 cut(s) 153, 501
MspI CCGG 3 cut(s) 345, 349, 443
MvnI CGCG 3 cut(s) 47, 101, 103
NdeI CATATG 1 cut(s) 215
NdeII GATC 3 cut(s) 174, 434, 744
NlaIV GGNNCC 3 cut(s) 211, 353, 436
NmuCI GTSAC 5 cut(s) 268, 340, 428, 521, 526
NotI GCGGCCGC 1 cut(s) 48
OliI CACNNNNGTG 1 cut(s) 593
PaeR7I CTCGAG 1 cut(s) 512
PauI GCGCGC 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 545
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 608
PflFI GACNNNGTC 1 cut(s) 11
PleI GAGTC 4 cut(s) 20, 466, 616, 746
PpsI GAGTC 4 cut(s) 20, 466, 616, 746
PspFI CCCAGC 2 cut(s) 61, 560
PspN4I GGNNCC 3 cut(s) 211, 353, 436
PstNI CAGNNNCTG 1 cut(s) 153
PsuI RGATCY 2 cut(s) 434, 744
PsyI GACNNNGTC 1 cut(s) 11
PteI GCGCGC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 593
SapI GCTCTTC 1 cut(s) 545
SaqAI TTAA 1 cut(s) 660
Sau3AI GATC 3 cut(s) 174, 434, 744
SchI GAGTC 4 cut(s) 21, 466, 616, 747
SfcI CTRYAG 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 512
SlaI CTCGAG 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 1 cut(s) 636
SspMI CTAG 2 cut(s) 486, 708
TaaI ACNGT 1 cut(s) 760
TaiI ACGT 4 cut(s) 342, 426, 528, 536
TaqI TCGA 2 cut(s) 513, 704
TasI AATT 1 cut(s) 636
TauI GCSGC 7 cut(s) 50, 53, 141, 147, 153, 222, 504
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 5 cut(s) 268, 340, 428, 521, 526
TseI GCWGC 9 cut(s) 85, 141, 147, 153, 156, 165, 498, 689, 692
Tsp45I GTSAC 5 cut(s) 268, 340, 428, 521, 526
TspDTI ATGAA 3 cut(s) 193, 563, 635
TspGWI ACGGA 3 cut(s) 256, 447, 471
TspRI CASTG 1 cut(s) 526
Tth111I GACNNNGTC 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 512
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 2 cut(s) 486, 708
ZraI GACGTC 2 cut(s) 424, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.