pycom17g13140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011396
Physical Location & Seq
Forward (+)
10829629 .. 10831918
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g13140.3

Sequence Viewer

Length: 1035 bp
ATGCTCTATGTATACCATGACTCTCAATCCAAAGCAAACGAGGCCCAAAAGCAAATATACAATGACAACCTCGAAGCCCATTTCAAAGAGAGGTCTTCTTCGGGTCATCTATGGACCTCATCATGGGGAACCCCCATTCATCCAGATTCCAGACGGACGCGAGAGAGAGAGAGAGGGATGATACTCTGGAGTGGTGGTGGAAGAGCTGTGGTTGTTCCGCGGAGACCTTCGTGGAGGACGCCCATGTGCTTGGCTTCCAACGTCAACACAGAGGAGCTACGTGCCCAGCTCGGTCAGCTCCACTCTGAGGCTGAGACCGCCAGAGCCAAAGCAAACAATGCAAGATTGAGGCTTTTGCGGCTGTCAGAGGCAGCCGAGAAGCTGAAACGGCAAGCAGCTATTAATGTCCAAACTGGGAAGGAAGACGATGCAAGGGAGCTGCTCTTTCAGAAGAAAAAGGTCATGGAAGCATTGGAGAAGTCAAAGCACCGCATAGAATTTCTTGATGAGCTTTCCACAAAGCTTAATGAGGCAATTTCTCTGAAAGAAGGGCAGCTAATCGGGAATGTTTCTTTGGATCTTGAAGTTGTCAGAGAAGATGCTTTTAGTCCAGTTCGAATTGTATCACCAACAGCTGAAGTTGCAGAAAATTTGGAGGTGGGCAAAGAATTTGTCTCAAATGATCTGAAAGAAGAAACACCGCTTCTTAAAGACAACCAAGCAAGCTTACCTGTTGAGCCAGAAGGGGAGGACCTTCGAGAACCTTTAAACAGGGGAGCTTGGAATGAAGATGAGACACTTAGTAGCTTGAAGGGATTAACCTCTTTCAATAGTTTCTTAGAACATCTGGATCATCAACTCAAAAAAATTGAAGCAGAACTTATCACCATATTGAGGATCTCAACCTTGGTAGTGGACGGCCAGGAGAAATCAAGAAATTTTAAAGTGCAAAAAACGATGGAACTTCTTGATAGTGTCTCTGGTGTTAGACAGAGGATTTCAAGCATCAAGATGGCAAATGTGGAGGCCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

38.96

Weight (kDa)

6.31

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06510
fragaria_vesca FvH4_6g38360 FvH4_6g38360
malus_domestica MD09G1150800.v1.1 MD17G1138200.v1.1
prunus_persica Prupe.3G174200_v2.0.a1
pyrus_communis pycom09g07060 pycom17g13140
rosa_chinensis RchiOBHm_Chr2g0151671
rosa_laevigata RLG00000020567
rosa_multiflora Rmu_sc0005294.1_g000050
rosa_roxburghii Rroxscaffold_2G00096270
rosa_rugosa Rorug02G0427700 Rorug02G0427800 Rorug02G0427900
rosa_samantha Rh2AG488600 Rh2BG501300 Rh2CG475100 Rh2DG512400
rosa_wichuraiana Rw2G040070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 12
AccII CGCG 2 cut(s) 160, 220
AciI CCGC 6 cut(s) 218, 220, 318, 358, 490, 701
AclWI GGATC 3 cut(s) 585, 858, 905
AcoI YGGCCR 1 cut(s) 919
AcsI RAATTY 4 cut(s) 497, 649, 668, 937
AcuI CTGAAG 1 cut(s) 657
AcyI GRCGYC 1 cut(s) 239
AfiI CCNNNNNNNGG 3 cut(s) 123, 307, 894
AgsI TTSAA 6 cut(s) 85, 584, 811, 829, 872, 1002
AjnI CCWGG 1 cut(s) 921
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
Alw26I GTCTC 5 cut(s) 217, 308, 679, 788, 982
AlwI GGATC 3 cut(s) 585, 858, 905
AoxI GGCC 3 cut(s) 42, 919, 1026
ApeKI GCWGC 4 cut(s) 371, 395, 439, 553
ApoI RAATTY 4 cut(s) 497, 649, 668, 937
ArsI GACNNNNNNTTYG 2 cut(s) 657, 689
AseI ATTAAT 1 cut(s) 402
AspS9I GGNCC 4 cut(s) 43, 114, 751, 1027
AsuHPI GGTGA 2 cut(s) 618, 877
AsuII TTCGAA 1 cut(s) 616
AvaII GGWCC 2 cut(s) 114, 751
BaeGI GKGCMC 1 cut(s) 286
BbsI GAAGAC 2 cut(s) 87, 429
BbvI GCAGC 4 cut(s) 383, 407, 426, 565
BccI CCATC 2 cut(s) 952, 1006
BceAI ACGGC 2 cut(s) 404, 934
BciT130I CCWGG 1 cut(s) 923
BcoDI GTCTC 5 cut(s) 217, 308, 679, 788, 982
BisI GCNGC 5 cut(s) 359, 372, 396, 440, 554
BlsI GCNGC 5 cut(s) 360, 373, 397, 441, 555
Bme1390I CCNGG 1 cut(s) 923
Bme18I GGWCC 2 cut(s) 114, 751
BmgT120I GGNCC 4 cut(s) 43, 114, 751, 1027
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 923
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 418, 589, 1014
BmuI ACTGGG 1 cut(s) 423
BpiI GAAGAC 2 cut(s) 87, 429
BpmI CTGGAG 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 616
BsaAI YACGTR 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 239
BsaI GGTCTC 2 cut(s) 217, 308
BsaJI CCNNGG 2 cut(s) 218, 906
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 307, 894
Bse1I ACTGG 2 cut(s) 418, 611
BseBI CCWGG 1 cut(s) 923
BseDI CCNNGG 2 cut(s) 218, 906
BseGI GGATG 2 cut(s) 139, 183
BseLI CCNNNNNNNGG 3 cut(s) 123, 307, 894
BseMII CTCAG 2 cut(s) 297, 303
BseNI ACTGG 2 cut(s) 418, 611
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 4 cut(s) 383, 407, 426, 565
BseYI CCCAGC 1 cut(s) 285
Bsh1236I CGCG 2 cut(s) 160, 220
BshFI GGCC 3 cut(s) 44, 921, 1028
BslI CCNNNNNNNGG 3 cut(s) 123, 307, 894
BsmAI GTCTC 5 cut(s) 217, 308, 679, 788, 982
BsnI GGCC 3 cut(s) 44, 921, 1028
Bso31I GGTCTC 2 cut(s) 217, 308
Bsp119I TTCGAA 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 4 cut(s) 577, 682, 850, 897
BspACI CCGC 6 cut(s) 218, 220, 318, 358, 490, 701
BspANI GGCC 3 cut(s) 44, 921, 1028
BspCNI CTCAG 2 cut(s) 298, 304
BspFNI CGCG 2 cut(s) 160, 220
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 3 cut(s) 585, 858, 905
BspQI GCTCTTC 1 cut(s) 196
BspT104I TTCGAA 1 cut(s) 616
BspTNI GGTCTC 2 cut(s) 217, 308
BsrI ACTGG 2 cut(s) 418, 611
BssECI CCNNGG 2 cut(s) 218, 906
BssMI GATC 4 cut(s) 577, 682, 850, 897
BssNAI GTATAC 1 cut(s) 13
BssNI GRCGYC 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 906
Bst1107I GTATAC 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 923
Bst6I CTCTTC 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 616
BstC8I GCNNGC 2 cut(s) 393, 724
BstDEI CTNAG 4 cut(s) 306, 312, 800, 838
BstDSI CCRYGG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 139, 183
BstFNI CGCG 2 cut(s) 160, 220
BstKTI GATC 4 cut(s) 580, 685, 853, 900
BstMAI GTCTC 5 cut(s) 217, 308, 679, 788, 982
BstMBI GATC 4 cut(s) 577, 682, 850, 897
BstMWI GCNNNNNNNGC 7 cut(s) 41, 295, 317, 338, 358, 388, 641
BstNI CCWGG 1 cut(s) 923
BstSCI CCNGG 1 cut(s) 921
BstSLI GKGCMC 1 cut(s) 286
BstUI CGCG 2 cut(s) 160, 220
BstV1I GCAGC 4 cut(s) 383, 407, 426, 565
BstV2I GAAGAC 2 cut(s) 87, 429
BstX2I RGATCY 2 cut(s) 577, 897
BstXI CCANNNNNNTGG 1 cut(s) 250
BstYI RGATCY 2 cut(s) 577, 897
BstZ17I GTATAC 1 cut(s) 13
BsuRI GGCC 3 cut(s) 44, 921, 1028
BtgI CCRYGG 1 cut(s) 218
BtsCI GGATG 2 cut(s) 139, 183
Cac8I GCNNGC 2 cut(s) 393, 724
Cfr13I GGNCC 4 cut(s) 43, 114, 751, 1027
Cfr42I CCGCGG 1 cut(s) 221
CseI GACGC 2 cut(s) 166, 247
CviAII CATG 4 cut(s) 17, 123, 244, 463
DdeI CTNAG 4 cut(s) 306, 312, 800, 838
DpnI GATC 4 cut(s) 579, 684, 852, 899
DpnII GATC 4 cut(s) 577, 682, 850, 897
DraI TTTAAA 2 cut(s) 768, 943
EaeI YGGCCR 1 cut(s) 919
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 906
Eco31I GGTCTC 2 cut(s) 217, 308
Eco47I GGWCC 2 cut(s) 114, 751
Eco57I CTGAAG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 751
EcoRII CCWGG 1 cut(s) 921
EcoT14I CCWWGG 1 cut(s) 906
ErhI CCWWGG 1 cut(s) 906
FaeI CATG 4 cut(s) 20, 126, 247, 466
FalI AAGNNNNNCTT 2 cut(s) 864, 896
FatI CATG 4 cut(s) 16, 122, 243, 462
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 5 cut(s) 359, 372, 396, 440, 554
FokI GGATG 2 cut(s) 126, 190
Fsp4HI GCNGC 5 cut(s) 359, 372, 396, 440, 554
GluI GCNGC 5 cut(s) 359, 372, 396, 440, 554
GsaI CCCAGC 1 cut(s) 289
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 3 cut(s) 44, 921, 1028
HgaI GACGC 2 cut(s) 166, 247
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 4 cut(s) 20, 126, 247, 466
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 2 cut(s) 521, 724
HinfI GANTC 2 cut(s) 20, 146
HphI GGTGA 2 cut(s) 618, 877
Hpy166II GTNNAC 3 cut(s) 13, 265, 916
Hpy188I TCNGA 6 cut(s) 307, 367, 450, 543, 593, 687
Hpy8I GTNNAC 3 cut(s) 13, 265, 916
HpyAV CCTTC 6 cut(s) 237, 412, 542, 737, 764, 805
HpyCH4IV ACGT 2 cut(s) 261, 280
HpyCH4V TGCA 4 cut(s) 341, 431, 644, 949
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 295, 317, 338, 358, 388, 641
HpyF3I CTNAG 4 cut(s) 306, 312, 800, 838
HpySE526I ACGT 2 cut(s) 261, 280
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 4 cut(s) 20, 126, 247, 466
KspI CCGCGG 1 cut(s) 221
Kzo9I GATC 4 cut(s) 577, 682, 850, 897
LguI GCTCTTC 1 cut(s) 196
LmnI GCTCC 4 cut(s) 274, 303, 436, 776
Lsp1109I GCAGC 4 cut(s) 383, 407, 426, 565
LweI GCATC 3 cut(s) 418, 589, 1014
MaeII ACGT 2 cut(s) 261, 280
MalI GATC 4 cut(s) 579, 684, 852, 899
MboI GATC 4 cut(s) 577, 682, 850, 897
MboII GAAGA 8 cut(s) 87, 90, 213, 434, 463, 608, 704, 800
MflI RGATCY 2 cut(s) 577, 897
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 7 cut(s) 497, 534, 618, 649, 668, 867, 937
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 282
MseI TTAA 6 cut(s) 402, 525, 708, 767, 818, 942
MslI CAYNNNNRTG 1 cut(s) 1010
MspA1I CMGCKG 2 cut(s) 220, 635
MspR9I CCNGG 1 cut(s) 923
MvaI CCWGG 1 cut(s) 923
MvnI CGCG 2 cut(s) 160, 220
MwoI GCNNNNNNNGC 7 cut(s) 41, 295, 317, 338, 358, 388, 641
NdeII GATC 4 cut(s) 577, 682, 850, 897
NlaIII CATG 4 cut(s) 20, 126, 247, 466
NlaIV GGNNCC 1 cut(s) 130
NmeAIII GCCGAG 1 cut(s) 400
NspV TTCGAA 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 5 cut(s) 360, 373, 397, 441, 555
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Ppu21I YACGTR 1 cut(s) 281
PpuMI RGGWCCY 1 cut(s) 751
PshBI ATTAAT 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 751
Psp6I CCWGG 1 cut(s) 921
PspFI CCCAGC 1 cut(s) 285
PspGI CCWGG 1 cut(s) 921
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 4 cut(s) 43, 114, 751, 1027
PspPPI RGGWCCY 1 cut(s) 751
PsuI RGATCY 2 cut(s) 577, 897
PvuII CAGCTG 1 cut(s) 635
RseI CAYNNNNRTG 1 cut(s) 1010
SacII CCGCGG 1 cut(s) 221
SapI GCTCTTC 1 cut(s) 196
SaqAI TTAA 6 cut(s) 402, 525, 708, 767, 818, 942
SatI GCNGC 5 cut(s) 359, 372, 396, 440, 554
Sau3AI GATC 4 cut(s) 577, 682, 850, 897
Sau96I GGNCC 4 cut(s) 43, 114, 751, 1027
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 923
SduI GDGCHC 1 cut(s) 286
SfaNI GCATC 3 cut(s) 418, 589, 1014
Sfr303I CCGCGG 1 cut(s) 221
SfuI TTCGAA 1 cut(s) 616
SgrBI CCGCGG 1 cut(s) 221
SinI GGWCC 2 cut(s) 114, 751
SmiMI CAYNNNNRTG 1 cut(s) 1010
Sse9I AATT 7 cut(s) 497, 534, 618, 649, 668, 867, 937
SsiI CCGC 6 cut(s) 218, 220, 318, 358, 490, 701
StyD4I CCNGG 1 cut(s) 921
StyI CCWWGG 1 cut(s) 906
TaiI ACGT 2 cut(s) 264, 283
TaqI TCGA 3 cut(s) 72, 616, 757
TaqII GACCGA 1 cut(s) 281
TasI AATT 7 cut(s) 497, 534, 618, 649, 668, 867, 937
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 6 cut(s) 402, 525, 708, 767, 818, 942
Tru9I TTAA 6 cut(s) 402, 525, 708, 767, 818, 942
TseI GCWGC 4 cut(s) 371, 395, 439, 553
TspDTI ATGAA 2 cut(s) 128, 801
TspGWI ACGGA 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 114, 751
VspI ATTAAT 1 cut(s) 402
XapI RAATTY 4 cut(s) 497, 649, 668, 937
XmiI GTMKAC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.