pycom09g07060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0011396
Physical Location & Seq
Forward (+)
5245944 .. 5247569
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g07060.2

Sequence Viewer

Length: 627 bp
ATGGTTGTTCGTCGGAGAGCTTCATGGAGGACGCCAATGTGCTTGGCTTCCAACGTCAACACAGAGGAGCTACGTGCCCAGCGCGGTCAGCTCCACTCTGAGGCTGAGATCGCCAGAGCCAAAGCAAACAATGCAAGATTGAGGCTTTTGCGGCTGTCAGAGGCAGCCGAGAAGCTGAAACCGCAAGCAGCAATTAATGTCCAAACCGGGAAGGAAGACGATGTAAGGGAGCTGCTCTTGCAGAAGAAAAAGATCATGGAAGCATTGGAGAAGTCAAATTACCGCATAGAGTTGCTGGATGAGCTTTCCACAAAGCTTAATGAGGCGATTTCTCTGAAAGAAAGGCAGCTAATCGGGAATGTTTCTTTGGATCTTGGACTTGTCAGAGAAGATGCTTTTAGTCCTGTTCGAATTGTATCACCAACAACGGAAGTTGCAGAAGATTTGAAGGAGAGCAAAGAATTTGTCCCAAATGATCTCAGTAAAGAAATGCCCCTTCCTAAAGACAACCAAGAAGGCTCACCTGTTGAGCCAGAAGGGGAGGACCTTCGAGAACGTTTAAATAAGGGAGTTTGGAATGAAGATGAGACAATTAGTAGCTTGAAGCTGAACTTATCACTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.58

Weight (kDa)

5.39

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06510
fragaria_vesca FvH4_6g38360 FvH4_6g38360
malus_domestica MD09G1150800.v1.1 MD17G1138200.v1.1
prunus_persica Prupe.3G174200_v2.0.a1
pyrus_communis pycom09g07060 pycom17g13140
rosa_chinensis RchiOBHm_Chr2g0151671
rosa_laevigata RLG00000020567
rosa_multiflora Rmu_sc0005294.1_g000050
rosa_roxburghii Rroxscaffold_2G00096270
rosa_rugosa Rorug02G0427700 Rorug02G0427800 Rorug02G0427900
rosa_samantha Rh2AG488600 Rh2BG501300 Rh2CG475100 Rh2DG512400
rosa_wichuraiana Rw2G040070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 84
AciI CCGC 4 cut(s) 84, 151, 182, 283
AclI AACGTT 1 cut(s) 556
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 2 cut(s) 448, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
Alw26I GTCTC 1 cut(s) 581
AlwI GGATC 1 cut(s) 378
ApeKI GCWGC 4 cut(s) 164, 188, 232, 346
ApoI RAATTY 1 cut(s) 461
ArsI GACNNNNNNTTYG 2 cut(s) 450, 482
AseI ATTAAT 1 cut(s) 195
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 544
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 2 cut(s) 411, 513
AsuII TTCGAA 1 cut(s) 409
AvaII GGWCC 1 cut(s) 544
BaeGI GKGCMC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 4 cut(s) 176, 200, 219, 358
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 581
BisI GCNGC 5 cut(s) 152, 165, 189, 233, 347
BlsI GCNGC 5 cut(s) 153, 166, 190, 234, 348
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 544
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 409
BpuMI CCSGG 1 cut(s) 208
BsaAI YACGTR 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 3 cut(s) 90, 96, 493
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 4 cut(s) 176, 200, 219, 358
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 4 cut(s) 108, 252, 370, 475
BspACI CCGC 4 cut(s) 84, 151, 182, 283
BspCNI CTCAG 3 cut(s) 91, 97, 492
BspFNI CGCG 1 cut(s) 84
BspPI GGATC 1 cut(s) 378
BspT104I TTCGAA 1 cut(s) 409
BssMI GATC 4 cut(s) 108, 252, 370, 475
BssNI GRCGYC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 3 cut(s) 99, 105, 479
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 4 cut(s) 111, 255, 373, 478
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 4 cut(s) 108, 252, 370, 475
BstMWI GCNNNNNNNGC 7 cut(s) 88, 110, 131, 151, 181, 238, 301
BstSCI CCNGG 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 4 cut(s) 176, 200, 219, 358
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BtsCI GGATG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 186
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 544
CseI GACGC 1 cut(s) 40
CviAII CATG 2 cut(s) 24, 256
DdeI CTNAG 3 cut(s) 99, 105, 479
DpnI GATC 4 cut(s) 110, 254, 372, 477
DpnII GATC 4 cut(s) 108, 252, 370, 475
DraI TTTAAA 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 544
EcoO109I RGGNCCY 1 cut(s) 544
FaeI CATG 2 cut(s) 27, 259
FaiI YATR 3 cut(s) 25, 257, 287
FalI AAGNNNNNCTT 1 cut(s) 596
FaqI GGGAC 1 cut(s) 452
FatI CATG 2 cut(s) 23, 255
Fnu4HI GCNGC 5 cut(s) 152, 165, 189, 233, 347
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 5 cut(s) 152, 165, 189, 233, 347
GlaI GCGC 1 cut(s) 83
GluI GCNGC 5 cut(s) 152, 165, 189, 233, 347
GsaI CCCAGC 1 cut(s) 82
HapII CCGG 1 cut(s) 207
HgaI GACGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 2 cut(s) 27, 259
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 314
HpaII CCGG 1 cut(s) 207
HphI GGTGA 2 cut(s) 411, 513
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 5 cut(s) 15, 100, 160, 336, 386
Hpy188III TCNNGA 2 cut(s) 355, 551
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 6 cut(s) 205, 442, 506, 509, 530, 557
HpyCH4IV ACGT 3 cut(s) 54, 73, 556
HpyCH4V TGCA 3 cut(s) 134, 241, 437
HpyF10VI GCNNNNNNNGC 7 cut(s) 88, 110, 131, 151, 181, 238, 301
HpyF3I CTNAG 3 cut(s) 99, 105, 479
HpySE526I ACGT 3 cut(s) 54, 73, 556
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 27, 259
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 4 cut(s) 108, 252, 370, 475
LmnI GCTCC 3 cut(s) 67, 96, 229
LpnPI CCDG 7 cut(s) 92, 127, 220, 281, 417, 537, 546
Lsp1109I GCAGC 4 cut(s) 176, 200, 219, 358
LweI GCATC 1 cut(s) 382
MaeII ACGT 3 cut(s) 54, 73, 556
MalI GATC 4 cut(s) 110, 254, 372, 477
MboI GATC 4 cut(s) 108, 252, 370, 475
MboII GAAGA 5 cut(s) 227, 256, 401, 452, 593
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 5 cut(s) 192, 277, 411, 461, 591
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 7 cut(s) 21, 58, 94, 135, 154, 316, 535
MseI TTAA 3 cut(s) 195, 318, 560
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 7 cut(s) 88, 110, 131, 151, 181, 238, 301
NciI CCSGG 1 cut(s) 208
NdeII GATC 4 cut(s) 108, 252, 370, 475
NlaIII CATG 2 cut(s) 27, 259
NmeAIII GCCGAG 1 cut(s) 193
NspV TTCGAA 1 cut(s) 409
PkrI GCNGC 5 cut(s) 153, 166, 190, 234, 348
Ppu21I YACGTR 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 544
PshBI ATTAAT 1 cut(s) 195
Psp1406I AACGTT 1 cut(s) 556
Psp5II RGGWCCY 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 544
PspPPI RGGWCCY 1 cut(s) 544
PsuI RGATCY 1 cut(s) 370
SaqAI TTAA 3 cut(s) 195, 318, 560
SatI GCNGC 5 cut(s) 152, 165, 189, 233, 347
Sau3AI GATC 4 cut(s) 108, 252, 370, 475
Sau96I GGNCC 1 cut(s) 544
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 409
SinI GGWCC 1 cut(s) 544
Sse9I AATT 5 cut(s) 192, 277, 411, 461, 591
SsiI CCGC 4 cut(s) 84, 151, 182, 283
StyD4I CCNGG 1 cut(s) 206
TaiI ACGT 3 cut(s) 57, 76, 559
TaqI TCGA 2 cut(s) 409, 550
TasI AATT 5 cut(s) 192, 277, 411, 461, 591
TauI GCSGC 1 cut(s) 154
Tru1I TTAA 3 cut(s) 195, 318, 560
Tru9I TTAA 3 cut(s) 195, 318, 560
TseI GCWGC 4 cut(s) 164, 188, 232, 346
TspDTI ATGAA 2 cut(s) 12, 594
TspGWI ACGGA 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 544
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.