MD17G1138200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0011396
Physical Location & Seq
Forward (+)
12421271 .. 12423823
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1138200.v1.1.491

Sequence Viewer

Length: 858 bp
ATGATACTCTGGAGTGGTGGTGGAACAGCCATGGTTGTTCCTCGGAGACCTTCATGGAGGACGCCCATGTGCTTGGCTTCCAACGTCAACACAGAGGAGCTACGTGCCCAGCTCGGTCAGCTCCACTCTGAGGCTGGGACCGCCAGAGCCAAAGCAAACAATGCAAGATTGAGGCTTTTGCGACTCTCAGAGGCAGCCGAGAAGCTGAAACGGCAAGCAGCTATTAATGTCCAAACTGGGAAGGAAGACGATGCGAGGGAGCTGCTCTTTCAGAAGAAAAAGGTCATGGAAGCATTGGAGAAGTCAAAGCACCGCATAGAATTTCTCGATGAACTTTCCACAAAGCTTAATGAGGCAATTTCTCTGAAAGAAGGGCAGCTAATCGGGAATGTTTCTTTGGATCTTGAAGTTGTCAGAGAAGATGCTTTTAGTCCAGTTCGAATTGTATCACCCGCAGCTGAAGTTGCAGAAAATTTGGAGGTGGGCAAAGAATTTGTCTCAAATGATCTGAAAGAAGAAACACCGCTTCTTAAAGACAATCAAGCAAGCTTACCTGTTGAGCCAGAAGGGGAGGACCTTCGAGAACCTTTAAACAGGGGAGCTTGGAATGAAGATGAGACAATTAGTAGCTTGAAGGGAATAACATCTTTCGATAGTTTCTTAGAACATCTGGATCATCAACTCAAAAAAATTGAAGCAGAACTTATCACCATATTGAGGATCTCAACCTTGGTAGTGGACAGCCAGGAGAAATCAAGAAATTTTAAAGTGCAAAAAACGATGGAACTTCTTGATAGTGTCTCAGGCGTTAGAGAGAGGATTTCAAGCATCAAGATGGCAAATGTGGAGGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

31.89

Weight (kDa)

5.52

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06510
fragaria_vesca FvH4_6g38360 FvH4_6g38360
malus_domestica MD09G1150800.v1.1 MD17G1138200.v1.1
prunus_persica Prupe.3G174200_v2.0.a1
pyrus_communis pycom09g07060 pycom17g13140
rosa_chinensis RchiOBHm_Chr2g0151671
rosa_laevigata RLG00000020567
rosa_multiflora Rmu_sc0005294.1_g000050
rosa_roxburghii Rroxscaffold_2G00096270
rosa_rugosa Rorug02G0427700 Rorug02G0427800 Rorug02G0427900
rosa_samantha Rh2AG488600 Rh2BG501300 Rh2CG475100 Rh2DG512400
rosa_wichuraiana Rw2G040070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 141, 313, 453, 524
AclWI GGATC 3 cut(s) 408, 681, 728
AcsI RAATTY 4 cut(s) 320, 472, 491, 760
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 130, 717
AgsI TTSAA 4 cut(s) 407, 634, 695, 825
AjnI CCWGG 1 cut(s) 744
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
Alw26I GTCTC 4 cut(s) 40, 502, 611, 805
AlwI GGATC 3 cut(s) 408, 681, 728
AoxI GGCC 1 cut(s) 849
ApeKI GCWGC 5 cut(s) 194, 218, 262, 376, 455
ApoI RAATTY 4 cut(s) 320, 472, 491, 760
ArsI GACNNNNNNTTYG 2 cut(s) 480, 512
AseI ATTAAT 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 138, 574
AsuHPI GGTGA 2 cut(s) 441, 700
AsuII TTCGAA 1 cut(s) 439
AvaII GGWCC 2 cut(s) 138, 574
BaeGI GKGCMC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 5 cut(s) 206, 230, 249, 388, 467
BccI CCATC 2 cut(s) 775, 829
BceAI ACGGC 1 cut(s) 227
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 1 cut(s) 746
BcoDI GTCTC 4 cut(s) 40, 502, 611, 805
BisI GCNGC 5 cut(s) 195, 219, 263, 377, 456
BlsI GCNGC 5 cut(s) 196, 220, 264, 378, 457
Bme1390I CCNGG 1 cut(s) 746
Bme18I GGWCC 2 cut(s) 138, 574
BmgT120I GGNCC 2 cut(s) 138, 574
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 746
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 3 cut(s) 241, 412, 837
BmuI ACTGGG 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 31
Bpu14I TTCGAA 1 cut(s) 439
BsaAI YACGTR 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 30, 41, 729
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 717
Bse1I ACTGG 2 cut(s) 241, 434
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 3 cut(s) 30, 41, 729
BseLI CCNNNNNNNGG 2 cut(s) 130, 717
BseMII CTCAG 3 cut(s) 120, 201, 816
BseNI ACTGG 2 cut(s) 241, 434
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 5 cut(s) 206, 230, 249, 388, 467
BseYI CCCAGC 2 cut(s) 108, 134
BshFI GGCC 1 cut(s) 851
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 2 cut(s) 130, 717
BsmAI GTCTC 4 cut(s) 40, 502, 611, 805
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 1 cut(s) 851
Bso31I GGTCTC 1 cut(s) 40
Bsp119I TTCGAA 1 cut(s) 439
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 4 cut(s) 400, 505, 673, 720
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 4 cut(s) 141, 313, 453, 524
BspANI GGCC 1 cut(s) 851
BspCNI CTCAG 3 cut(s) 121, 200, 815
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 3 cut(s) 408, 681, 728
BspT104I TTCGAA 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 40
BsrI ACTGG 2 cut(s) 241, 434
BssECI CCNNGG 3 cut(s) 30, 41, 729
BssMI GATC 4 cut(s) 400, 505, 673, 720
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 2 cut(s) 30, 729
Bst2UI CCWGG 1 cut(s) 746
BstACI GRCGYC 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 104
BstBI TTCGAA 1 cut(s) 439
BstC8I GCNNGC 2 cut(s) 216, 547
BstDEI CTNAG 4 cut(s) 129, 187, 661, 802
BstDSI CCRYGG 1 cut(s) 30
BstKTI GATC 4 cut(s) 403, 508, 676, 723
BstMAI GTCTC 4 cut(s) 40, 502, 611, 805
BstMBI GATC 4 cut(s) 400, 505, 673, 720
BstMWI GCNNNNNNNGC 5 cut(s) 118, 140, 161, 211, 464
BstNI CCWGG 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 744
BstSLI GKGCMC 1 cut(s) 109
BstV1I GCAGC 5 cut(s) 206, 230, 249, 388, 467
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 400, 720
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 2 cut(s) 400, 720
BsuRI GGCC 1 cut(s) 851
BtgI CCRYGG 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 216, 547
Cfr13I GGNCC 2 cut(s) 138, 574
CseI GACGC 1 cut(s) 70
CviAII CATG 4 cut(s) 31, 54, 67, 286
DdeI CTNAG 4 cut(s) 129, 187, 661, 802
DpnI GATC 4 cut(s) 402, 507, 675, 722
DpnII GATC 4 cut(s) 400, 505, 673, 720
DraI TTTAAA 2 cut(s) 591, 766
Eco130I CCWWGG 2 cut(s) 30, 729
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 138, 574
Eco57I CTGAAG 1 cut(s) 480
EcoO109I RGGNCCY 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 744
EcoT14I CCWWGG 2 cut(s) 30, 729
ErhI CCWWGG 2 cut(s) 30, 729
FaeI CATG 4 cut(s) 34, 57, 70, 289
FaiI YATR 6 cut(s) 32, 55, 68, 287, 317, 713
FalI AAGNNNNNCTT 2 cut(s) 687, 719
FaqI GGGAC 1 cut(s) 151
FatI CATG 4 cut(s) 30, 53, 66, 285
FauI CCCGC 1 cut(s) 460
Fnu4HI GCNGC 5 cut(s) 195, 219, 263, 377, 456
Fsp4HI GCNGC 5 cut(s) 195, 219, 263, 377, 456
GluI GCNGC 5 cut(s) 195, 219, 263, 377, 456
GsaI CCCAGC 2 cut(s) 112, 138
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 1 cut(s) 851
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 4 cut(s) 34, 57, 70, 289
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 2 cut(s) 344, 547
HinfI GANTC 1 cut(s) 183
HphI GGTGA 2 cut(s) 441, 700
Hpy166II GTNNAC 2 cut(s) 88, 739
Hpy188I TCNGA 7 cut(s) 45, 130, 190, 273, 366, 416, 510
Hpy188III TCNNGA 9 cut(s) 10, 326, 385, 404, 581, 671, 756, 791, 832
Hpy8I GTNNAC 2 cut(s) 88, 739
HpyAV CCTTC 6 cut(s) 60, 235, 365, 560, 587, 628
HpyCH4IV ACGT 2 cut(s) 84, 103
HpyCH4V TGCA 3 cut(s) 164, 467, 772
HpyF10VI GCNNNNNNNGC 5 cut(s) 118, 140, 161, 211, 464
HpyF3I CTNAG 4 cut(s) 129, 187, 661, 802
HpySE526I ACGT 2 cut(s) 84, 103
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 4 cut(s) 34, 57, 70, 289
Kzo9I GATC 4 cut(s) 400, 505, 673, 720
LmnI GCTCC 4 cut(s) 97, 126, 259, 599
Lsp1109I GCAGC 5 cut(s) 206, 230, 249, 388, 467
LweI GCATC 3 cut(s) 241, 412, 837
MaeII ACGT 2 cut(s) 84, 103
MalI GATC 4 cut(s) 402, 507, 675, 722
MboI GATC 4 cut(s) 400, 505, 673, 720
MboII GAAGA 5 cut(s) 257, 286, 431, 527, 623
MflI RGATCY 2 cut(s) 400, 720
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 8 cut(s) 320, 357, 441, 472, 491, 621, 690, 760
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 105
MseI TTAA 5 cut(s) 225, 348, 531, 590, 765
MslI CAYNNNNRTG 1 cut(s) 833
MspA1I CMGCKG 1 cut(s) 458
MspR9I CCNGG 1 cut(s) 746
MvaI CCWGG 1 cut(s) 746
MwoI GCNNNNNNNGC 5 cut(s) 118, 140, 161, 211, 464
NcoI CCATGG 1 cut(s) 30
NdeII GATC 4 cut(s) 400, 505, 673, 720
NlaIII CATG 4 cut(s) 34, 57, 70, 289
NlaIV GGNNCC 1 cut(s) 139
NmeAIII GCCGAG 1 cut(s) 223
NspV TTCGAA 1 cut(s) 439
PkrI GCNGC 5 cut(s) 196, 220, 264, 378, 457
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
Ppu21I YACGTR 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 574
PshBI ATTAAT 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 744
PspFI CCCAGC 2 cut(s) 108, 134
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 138, 574
PspPPI RGGWCCY 1 cut(s) 574
PsuI RGATCY 2 cut(s) 400, 720
PvuII CAGCTG 1 cut(s) 458
RseI CAYNNNNRTG 1 cut(s) 833
SaqAI TTAA 5 cut(s) 225, 348, 531, 590, 765
SatI GCNGC 5 cut(s) 195, 219, 263, 377, 456
Sau3AI GATC 4 cut(s) 400, 505, 673, 720
Sau96I GGNCC 2 cut(s) 138, 574
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 1 cut(s) 109
SfaNI GCATC 3 cut(s) 241, 412, 837
SfuI TTCGAA 1 cut(s) 439
SinI GGWCC 2 cut(s) 138, 574
SmiMI CAYNNNNRTG 1 cut(s) 833
Sse9I AATT 8 cut(s) 320, 357, 441, 472, 491, 621, 690, 760
SsiI CCGC 4 cut(s) 141, 313, 453, 524
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 2 cut(s) 30, 729
TaiI ACGT 2 cut(s) 87, 106
TaqI TCGA 4 cut(s) 327, 439, 580, 651
TaqII GACCGA 1 cut(s) 104
TasI AATT 8 cut(s) 320, 357, 441, 472, 491, 621, 690, 760
Tru1I TTAA 5 cut(s) 225, 348, 531, 590, 765
Tru9I TTAA 5 cut(s) 225, 348, 531, 590, 765
TseI GCWGC 5 cut(s) 194, 218, 262, 376, 455
TspDTI ATGAA 3 cut(s) 42, 345, 624
VpaK11BI GGWCC 2 cut(s) 138, 574
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 4 cut(s) 320, 472, 491, 760
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.