Rroxscaffold_2G00096270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011396
Physical Location & Seq
Forward (+)
17507507 .. 17512094
4588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096270.1

Sequence Viewer

Length: 867 bp
ATGATGCTGATGAAGAGTGGTGGCGGCGCGGCCATGGCTGTCCCTTGCAGACCGCCCATGTGCTCCGCCATGGCTTCCAATATCAATTCAGAAAACCTACGTGCCCAACTGGGTCACCTCCATTCTGAGGCTGAGACCACCAGAGACAAAGCTAACAATGCAAGATTGAGGCTTCTGCGACTGTCAGAGGCAGCTGAGAAGCTTAGACGGCAAGCAGCAATCCATGTCCAGTCTGGGAGGGAAGACGATGCTAGGCAAATGCTCTATCAGAAGAAGAAGGTCATGCAGGCATTGGAGAAGTCAAAGAAACGCATCGAATTGCTTGATGAGCTTTCCGCGAAGCTTAATGAGGCAATTTCTGTAAAAGAGAGGCAGCTAATTGGAAATGTCGCTTTGGATCTTGAAGTTGTCAGACAAGATGCTTTCAGTCCAGTTCGAATTGTATCCCCAACACCTGAAGATGCACAAGATTTGGATGAGGTCGAAGAACTTGTACCCAAGGGTTCGAAGCTTACTGATGACCAAGAAAACTTGTTCCTTACGGAGAATCAAGCAAGCTTACCTGTTGAGCCAGAAGGAGACGATGTTCGAAAACCTTTAAAGACTGGAGTTTGGAATGAAGATGACATAATTAGTAGCTTGCAGGGAATAACCTCTTTTGAGAATTTCCTGGAGCATCTGGACAATAAACTTAACAAAATTGAAGCAGAACTTGTCACTGTATTAAGGATCTCAACCTTGGTAGTGGACAACCACGAGAAGGCAAAAAATTTCAAGGTGCAACAGATAATGGAACTTATTGATAGTGTAGGTGGCATTAGACAGAGAATTTCAAGTATCAAGCTGGCAGATGTCGAGGTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.21

Weight (kDa)

5.46

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06510
fragaria_vesca FvH4_6g38360 FvH4_6g38360
malus_domestica MD09G1150800.v1.1 MD17G1138200.v1.1
prunus_persica Prupe.3G174200_v2.0.a1
pyrus_communis pycom09g07060 pycom17g13140
rosa_chinensis RchiOBHm_Chr2g0151671
rosa_laevigata RLG00000020567
rosa_multiflora Rmu_sc0005294.1_g000050
rosa_roxburghii Rroxscaffold_2G00096270
rosa_rugosa Rorug02G0427700 Rorug02G0427800 Rorug02G0427900
rosa_samantha Rh2AG488600 Rh2BG501300 Rh2CG475100 Rh2DG512400
rosa_wichuraiana Rw2G040070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 29, 338
AciI CCGC 5 cut(s) 24, 29, 53, 66, 336
AclWI GGATC 2 cut(s) 405, 737
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 3 cut(s) 664, 769, 828
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 2 cut(s) 127, 760
AgsI TTSAA 4 cut(s) 404, 704, 775, 834
AjnI CCWGG 1 cut(s) 669
AloI GAACNNNNNNTCC 2 cut(s) 570, 602
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 3 cut(s) 128, 138, 573
AlwI GGATC 2 cut(s) 405, 737
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 3 cut(s) 191, 215, 373
ApoI RAATTY 3 cut(s) 664, 769, 828
AspLEI GCGC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 107
AsuII TTCGAA 3 cut(s) 436, 506, 589
BaeGI GKGCMC 1 cut(s) 106
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BauI CACGAG 1 cut(s) 755
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 3 cut(s) 203, 227, 385
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 671
BciVI GTATCC 1 cut(s) 454
BcoDI GTCTC 3 cut(s) 128, 138, 573
BfaI CTAG 1 cut(s) 252
BfuI GTATCC 1 cut(s) 454
BisI GCNGC 5 cut(s) 25, 30, 192, 216, 374
BlsI GCNGC 5 cut(s) 26, 31, 193, 217, 375
Bme1390I CCNGG 1 cut(s) 671
BmrFI CCNGG 1 cut(s) 671
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 5 cut(s) 238, 321, 409, 451, 685
BmuI ACTGGG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 2 cut(s) 627, 692
Bpu14I TTCGAA 3 cut(s) 436, 506, 589
BsaAI YACGTR 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 4 cut(s) 33, 69, 498, 738
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 760
Bse1I ACTGG 4 cut(s) 114, 229, 431, 610
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 4 cut(s) 33, 69, 498, 738
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 2 cut(s) 127, 760
BseMII CTCAG 3 cut(s) 117, 123, 186
BseNI ACTGG 4 cut(s) 114, 229, 431, 610
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 3 cut(s) 203, 227, 385
Bsh1236I CGCG 2 cut(s) 29, 338
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 65
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 127, 760
BsmAI GTCTC 3 cut(s) 128, 138, 573
BsmBI CGTCTC 1 cut(s) 573
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 128
Bsp119I TTCGAA 3 cut(s) 436, 506, 589
Bsp1286I GDGCHC 2 cut(s) 65, 106
Bsp143I GATC 2 cut(s) 397, 729
Bsp19I CCATGG 2 cut(s) 33, 69
BspACI CCGC 5 cut(s) 24, 29, 53, 66, 336
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 3 cut(s) 118, 124, 187
BspFNI CGCG 2 cut(s) 29, 338
BspPI GGATC 2 cut(s) 405, 737
BspT104I TTCGAA 3 cut(s) 436, 506, 589
BspTNI GGTCTC 1 cut(s) 128
BsrI ACTGG 4 cut(s) 114, 229, 431, 610
BssECI CCNNGG 4 cut(s) 33, 69, 498, 738
BssMI GATC 2 cut(s) 397, 729
BssSI CACGAG 1 cut(s) 755
BssT1I CCWWGG 4 cut(s) 33, 69, 498, 738
Bst2BI CACGAG 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 2 cut(s) 183, 721
Bst6I CTCTTC 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 101
BstBI TTCGAA 3 cut(s) 436, 506, 589
BstC8I GCNNGC 5 cut(s) 213, 288, 556, 641, 846
BstDEI CTNAG 4 cut(s) 126, 132, 195, 203
BstDSI CCRYGG 2 cut(s) 33, 69
BstEII GGTNACC 1 cut(s) 113
BstF5I GGATG 1 cut(s) 481
BstFNI CGCG 2 cut(s) 29, 338
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 400, 732
BstMAI GTCTC 3 cut(s) 128, 138, 573
BstMBI GATC 2 cut(s) 397, 729
BstMWI GCNNNNNNNGC 4 cut(s) 35, 158, 208, 328
BstNI CCWGG 1 cut(s) 671
BstPI GGTNACC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 669
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 2 cut(s) 29, 338
BstV1I GCAGC 3 cut(s) 203, 227, 385
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 2 cut(s) 397, 729
BstYI RGATCY 2 cut(s) 397, 729
BsuI GTATCC 1 cut(s) 454
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 2 cut(s) 33, 69
BtsCI GGATG 1 cut(s) 481
BtsIMutI CAGTG 1 cut(s) 717
Cac8I GCNNGC 5 cut(s) 213, 288, 556, 641, 846
CfoI GCGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 494
CviAII CATG 5 cut(s) 34, 58, 70, 224, 283
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 4 cut(s) 126, 132, 195, 203
DpnI GATC 2 cut(s) 399, 731
DpnII GATC 2 cut(s) 397, 729
DraI TTTAAA 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 4 cut(s) 33, 69, 498, 738
Eco31I GGTCTC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 477
Eco91I GGTNACC 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 4 cut(s) 33, 69, 498, 738
ErhI CCWWGG 4 cut(s) 33, 69, 498, 738
Esp3I CGTCTC 1 cut(s) 573
FaeI CATG 5 cut(s) 37, 61, 73, 227, 286
FaiI YATR 6 cut(s) 35, 59, 71, 225, 284, 629
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 1 cut(s) 26
FatI CATG 5 cut(s) 33, 57, 69, 223, 282
Fnu4HI GCNGC 5 cut(s) 25, 30, 192, 216, 374
FokI GGATG 1 cut(s) 488
Fsp4HI GCNGC 5 cut(s) 25, 30, 192, 216, 374
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 28
GluI GCNGC 5 cut(s) 25, 30, 192, 216, 374
GsuI CTGGAG 2 cut(s) 627, 692
HaeIII GGCC 1 cut(s) 32
HhaI GCGC 1 cut(s) 29
Hin1II CATG 5 cut(s) 37, 61, 73, 227, 286
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 4 cut(s) 200, 341, 509, 556
HinfI GANTC 1 cut(s) 547
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 6 cut(s) 91, 127, 187, 270, 413, 863
Hpy188III TCNNGA 2 cut(s) 401, 680
Hpy8I GTNNAC 1 cut(s) 748
HpyAV CCTTC 3 cut(s) 271, 569, 754
HpyCH4III ACNGT 2 cut(s) 183, 721
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 6 cut(s) 48, 161, 286, 464, 643, 781
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 158, 208, 328
HpyF3I CTNAG 4 cut(s) 126, 132, 195, 203
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 5 cut(s) 37, 61, 73, 227, 286
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 397, 729
LmnI GCTCC 2 cut(s) 68, 673
Lsp1109I GCAGC 3 cut(s) 203, 227, 385
LweI GCATC 5 cut(s) 238, 321, 409, 451, 685
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 2 cut(s) 113, 715
MalI GATC 2 cut(s) 399, 731
MboI GATC 2 cut(s) 397, 729
MboII GAAGA 7 cut(s) 25, 254, 283, 286, 470, 497, 632
MflI RGATCY 2 cut(s) 397, 729
MhlI GDGCHC 2 cut(s) 65, 106
MseI TTAA 4 cut(s) 345, 599, 693, 725
MspA1I CMGCKG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 671
MvaI CCWGG 1 cut(s) 671
MvnI CGCG 2 cut(s) 29, 338
MwoI GCNNNNNNNGC 4 cut(s) 35, 158, 208, 328
NcoI CCATGG 2 cut(s) 33, 69
NdeII GATC 2 cut(s) 397, 729
NlaIII CATG 5 cut(s) 37, 61, 73, 227, 286
NmuCI GTSAC 2 cut(s) 113, 715
NspV TTCGAA 3 cut(s) 436, 506, 589
PfeI GAWTC 1 cut(s) 547
PfoI TCCNGGA 1 cut(s) 669
PkrI GCNGC 5 cut(s) 26, 31, 193, 217, 375
Ppu21I YACGTR 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 669
PspEI GGTNACC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 669
PsuI RGATCY 2 cut(s) 397, 729
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
SaqAI TTAA 4 cut(s) 345, 599, 693, 725
SatI GCNGC 5 cut(s) 25, 30, 192, 216, 374
Sau3AI GATC 2 cut(s) 397, 729
ScrFI CCNGG 1 cut(s) 671
SduI GDGCHC 2 cut(s) 65, 106
SfaNI GCATC 5 cut(s) 238, 321, 409, 451, 685
SfuI TTCGAA 3 cut(s) 436, 506, 589
SsiI CCGC 5 cut(s) 24, 29, 53, 66, 336
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 669
StyI CCWWGG 4 cut(s) 33, 69, 498, 738
TaaI ACNGT 2 cut(s) 183, 721
TaiI ACGT 1 cut(s) 103
TaqI TCGA 6 cut(s) 315, 436, 483, 506, 589, 855
TauI GCSGC 2 cut(s) 27, 32
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 4 cut(s) 345, 599, 693, 725
Tru9I TTAA 4 cut(s) 345, 599, 693, 725
TscAI CASTG 1 cut(s) 724
TseFI GTSAC 2 cut(s) 113, 715
TseI GCWGC 3 cut(s) 191, 215, 373
Tsp45I GTSAC 2 cut(s) 113, 715
TspDTI ATGAA 2 cut(s) 26, 633
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 1 cut(s) 724
XapI RAATTY 3 cut(s) 664, 769, 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.