FvH4_6g38360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011396
Physical Location & Seq
Reverse (-)
30312364 .. 30316055
3692 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38360.t1

Sequence Viewer

Length: 867 bp
ATGATGCTGATGAAGAGCGGTGGTGGCACGGCCATGGCTGTCCCTTGCAGACCGCCCATGTGCTCCGCCACGGCTTCCAATATCAACTCAGAAAACCTACGTGTCCAACTGGGTCAGCTTCATTCTGAGGCTGAGACCGCCAGAGACAAAGCTAACAATGCAAGGTTGAGGCTTCTGCGGCTGTCCGAGGCGGCTGAGAAGCTTAGACGGCAAGCAGCAATCAATGTCCGGAGCGGGAGGGAAGATGAAGCGAGGGAAATGCTTTTTCAGAAGAAGAAGGTCATGCAGGCATTGGAGAAGTCAAAGAAACGGATTGAATTGCTTGATGAGCTTTCGACAAAGCTTAATGAGGCAATTTCTGTAAAAGAGAGGCAGCTAATTGGAAATGTTGCTTTGGATCTTGAAGTTGTCAGAGAAGATGCTTCCAGTCCAGTTCGAATTATATCACCAACACCTGAAGACGGAGAAGATTTGGATGAGGTCGAAGAACTTGTCCCCAAGGGATCAAAGCTTACTGATGGCCAAGATAACTTGCTCCTTACGGAGAATCAAGCTAGCTTACATGTTGAGCCAGAGGGAGATGATGTTCGGAAACCTTTAACAAGTGGGGTTTGGAATGAAGATGACACAATCAATTGCTTTCAGGGAATAACCTCTTTTGAGAATTTCTTGGAGCATCTGGATGATAAACTTAACAAAATCGAAGCAGAACTTGTCACTGTATTAAGGATCTCAACCTTGGTAGTGGACAACCACGAGAAGGCAACAAATTTCAAGGTGCAACAGATAATGGAACTTATTGAGAGTATAGGTGGCATTAGACAGAGAATTTCAAGTATCAAGCTGGCAGATGCCGAGGTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

32.11

Weight (kDa)

5.09

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06510
fragaria_vesca FvH4_6g38360 FvH4_6g38360
malus_domestica MD09G1150800.v1.1 MD17G1138200.v1.1
prunus_persica Prupe.3G174200_v2.0.a1
pyrus_communis pycom09g07060 pycom17g13140
rosa_chinensis RchiOBHm_Chr2g0151671
rosa_laevigata RLG00000020567
rosa_multiflora Rmu_sc0005294.1_g000050
rosa_roxburghii Rroxscaffold_2G00096270
rosa_rugosa Rorug02G0427700 Rorug02G0427800 Rorug02G0427900
rosa_samantha Rh2AG488600 Rh2BG501300 Rh2CG475100 Rh2DG512400
rosa_wichuraiana Rw2G040070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 18, 234
AccIII TCCGGA 1 cut(s) 228
AciI CCGC 7 cut(s) 18, 53, 66, 138, 178, 191, 234
AclWI GGATC 3 cut(s) 405, 511, 737
AcoI YGGCCR 2 cut(s) 30, 520
AcsI RAATTY 3 cut(s) 664, 769, 828
AcuI CTGAAG 1 cut(s) 477
AfiI CCNNNNNNNGG 2 cut(s) 461, 760
AflIII ACRYGT 2 cut(s) 100, 562
AgsI TTSAA 4 cut(s) 317, 404, 775, 834
AloI GAACNNNNNNTCC 2 cut(s) 570, 602
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 128, 138
AlwI GGATC 3 cut(s) 405, 511, 737
Aor13HI TCCGGA 1 cut(s) 228
AoxI GGCC 2 cut(s) 30, 520
ApeKI GCWGC 2 cut(s) 215, 373
ApoI RAATTY 3 cut(s) 664, 769, 828
ArsI GACNNNNNNTTYG 2 cut(s) 477, 509
AsuHPI GGTGA 1 cut(s) 438
AsuII TTCGAA 1 cut(s) 436
AsuNHI GCTAGC 1 cut(s) 554
BalI TGGCCA 1 cut(s) 522
BauI CACGAG 1 cut(s) 755
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 227, 385
BccI CCATC 1 cut(s) 512
BceAI ACGGC 3 cut(s) 45, 87, 224
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BcoDI GTCTC 2 cut(s) 128, 138
BfaI CTAG 1 cut(s) 555
BisI GCNGC 4 cut(s) 179, 192, 216, 374
BlsI GCNGC 4 cut(s) 180, 193, 217, 375
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 3 cut(s) 409, 685, 841
BmtI GCTAGC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 436
BsaAI YACGTR 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 6 cut(s) 33, 69, 186, 498, 738, 855
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 461, 760
Bse1I ACTGG 3 cut(s) 114, 426, 431
BseAI TCCGGA 1 cut(s) 228
BseDI CCNNGG 6 cut(s) 33, 69, 186, 498, 738, 855
BseGI GGATG 2 cut(s) 481, 688
BseLI CCNNNNNNNGG 2 cut(s) 461, 760
BseMII CTCAG 4 cut(s) 102, 117, 123, 186
BseNI ACTGG 3 cut(s) 114, 426, 431
BseXI GCAGC 2 cut(s) 227, 385
BshFI GGCC 2 cut(s) 32, 522
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 229
BslFI GGGAC 2 cut(s) 26, 479
BslI CCNNNNNNNGG 2 cut(s) 461, 760
BsmAI GTCTC 2 cut(s) 128, 138
BsmFI GGGAC 2 cut(s) 26, 479
BsnI GGCC 2 cut(s) 32, 522
Bso31I GGTCTC 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 65
Bsp13I TCCGGA 1 cut(s) 228
Bsp143I GATC 3 cut(s) 397, 503, 729
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 7 cut(s) 18, 53, 66, 138, 178, 191, 234
BspANI GGCC 2 cut(s) 32, 522
BspCNI CTCAG 4 cut(s) 101, 118, 124, 187
BspEI TCCGGA 1 cut(s) 228
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 3 cut(s) 405, 511, 737
BspQI GCTCTTC 1 cut(s) 8
BspT104I TTCGAA 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 128
BsrBI CCGCTC 2 cut(s) 18, 234
BsrI ACTGG 3 cut(s) 114, 426, 431
BssECI CCNNGG 6 cut(s) 33, 69, 186, 498, 738, 855
BssMI GATC 3 cut(s) 397, 503, 729
BssSI CACGAG 1 cut(s) 755
BssT1I CCWWGG 3 cut(s) 33, 498, 738
Bst2BI CACGAG 1 cut(s) 755
Bst4CI ACNGT 1 cut(s) 721
Bst6I CTCTTC 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 436
BstC8I GCNNGC 4 cut(s) 213, 288, 556, 846
BstDEI CTNAG 5 cut(s) 88, 126, 132, 195, 203
BstDSI CCRYGG 2 cut(s) 33, 69
BstF5I GGATG 2 cut(s) 481, 688
BstKTI GATC 3 cut(s) 400, 506, 732
BstMAI GTCTC 2 cut(s) 128, 138
BstMBI GATC 3 cut(s) 397, 503, 729
BstMWI GCNNNNNNNGC 6 cut(s) 24, 137, 158, 178, 208, 328
BstNSI RCATGY 1 cut(s) 566
BstV1I GCAGC 2 cut(s) 227, 385
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 2 cut(s) 397, 729
BstYI RGATCY 2 cut(s) 397, 729
BsuRI GGCC 2 cut(s) 32, 522
BtgI CCRYGG 2 cut(s) 33, 69
BtsCI GGATG 2 cut(s) 481, 688
BtsIMutI CAGTG 1 cut(s) 717
Cac8I GCNNGC 4 cut(s) 213, 288, 556, 846
CviAII CATG 4 cut(s) 34, 58, 283, 563
DdeI CTNAG 5 cut(s) 88, 126, 132, 195, 203
DpnI GATC 3 cut(s) 399, 505, 731
DpnII GATC 3 cut(s) 397, 503, 729
EaeI YGGCCR 2 cut(s) 30, 520
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 3 cut(s) 33, 498, 738
Eco31I GGTCTC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 477
EcoT14I CCWWGG 3 cut(s) 33, 498, 738
ErhI CCWWGG 3 cut(s) 33, 498, 738
FaeI CATG 4 cut(s) 37, 61, 286, 566
FaiI YATR 6 cut(s) 35, 59, 284, 443, 564, 809
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 2 cut(s) 26, 479
FatI CATG 4 cut(s) 33, 57, 282, 562
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 4 cut(s) 179, 192, 216, 374
FokI GGATG 2 cut(s) 488, 695
Fsp4HI GCNGC 4 cut(s) 179, 192, 216, 374
FspBI CTAG 1 cut(s) 555
GluI GCNGC 4 cut(s) 179, 192, 216, 374
HaeIII GGCC 2 cut(s) 32, 522
HapII CCGG 1 cut(s) 229
Hin1II CATG 4 cut(s) 37, 61, 286, 566
HindIII AAGCTT 3 cut(s) 200, 341, 509
HinfI GANTC 1 cut(s) 547
HpaII CCGG 1 cut(s) 229
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 7 cut(s) 91, 127, 187, 270, 413, 591, 863
Hpy188III TCNNGA 3 cut(s) 229, 401, 680
Hpy8I GTNNAC 1 cut(s) 748
HpyAV CCTTC 2 cut(s) 271, 754
HpyCH4III ACNGT 1 cut(s) 721
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 4 cut(s) 48, 161, 286, 781
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 137, 158, 178, 208, 328
HpyF3I CTNAG 5 cut(s) 88, 126, 132, 195, 203
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 4 cut(s) 37, 61, 286, 566
Kpn2I TCCGGA 1 cut(s) 228
Kzo9I GATC 3 cut(s) 397, 503, 729
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 4 cut(s) 68, 231, 540, 673
Lsp1109I GCAGC 2 cut(s) 227, 385
LweI GCATC 3 cut(s) 409, 685, 841
MaeI CTAG 1 cut(s) 555
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 715
MalI GATC 3 cut(s) 399, 505, 731
MbiI CCGCTC 2 cut(s) 18, 234
MboI GATC 3 cut(s) 397, 503, 729
MboII GAAGA 9 cut(s) 25, 254, 283, 286, 428, 470, 479, 497, 632
MfeI CAATTG 1 cut(s) 634
MflI RGATCY 2 cut(s) 397, 729
MhlI GDGCHC 1 cut(s) 65
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 8 cut(s) 317, 354, 378, 438, 634, 664, 769, 828
MluNI TGGCCA 1 cut(s) 522
MmeI TCCRAC 1 cut(s) 130
Mox20I TGGCCA 1 cut(s) 522
MroI TCCGGA 1 cut(s) 228
MscI TGGCCA 1 cut(s) 522
MseI TTAA 4 cut(s) 345, 599, 693, 725
MslI CAYNNNNRTG 2 cut(s) 32, 681
Msp20I TGGCCA 1 cut(s) 522
MspI CCGG 1 cut(s) 229
MunI CAATTG 1 cut(s) 634
MwoI GCNNNNNNNGC 6 cut(s) 24, 137, 158, 178, 208, 328
NcoI CCATGG 1 cut(s) 33
NdeII GATC 3 cut(s) 397, 503, 729
NheI GCTAGC 1 cut(s) 554
NlaIII CATG 4 cut(s) 37, 61, 286, 566
NmuCI GTSAC 1 cut(s) 715
NspI RCATGY 1 cut(s) 566
NspV TTCGAA 1 cut(s) 436
PciI ACATGT 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 547
PkrI GCNGC 4 cut(s) 180, 193, 217, 375
Ppu21I YACGTR 1 cut(s) 101
PscI ACATGT 1 cut(s) 562
PsuI RGATCY 2 cut(s) 397, 729
RseI CAYNNNNRTG 2 cut(s) 32, 681
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 4 cut(s) 345, 599, 693, 725
SatI GCNGC 4 cut(s) 179, 192, 216, 374
Sau3AI GATC 3 cut(s) 397, 503, 729
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 3 cut(s) 409, 685, 841
SfuI TTCGAA 1 cut(s) 436
SmiMI CAYNNNNRTG 2 cut(s) 32, 681
Sse9I AATT 8 cut(s) 317, 354, 378, 438, 634, 664, 769, 828
SsiI CCGC 7 cut(s) 18, 53, 66, 138, 178, 191, 234
SspMI CTAG 1 cut(s) 555
StyI CCWWGG 3 cut(s) 33, 498, 738
TaaI ACNGT 1 cut(s) 721
TaiI ACGT 1 cut(s) 103
TaqI TCGA 4 cut(s) 335, 436, 483, 702
TasI AATT 8 cut(s) 317, 354, 378, 438, 634, 664, 769, 828
TauI GCSGC 2 cut(s) 181, 194
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 4 cut(s) 345, 599, 693, 725
Tru9I TTAA 4 cut(s) 345, 599, 693, 725
TscAI CASTG 1 cut(s) 724
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 2 cut(s) 215, 373
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 4 cut(s) 26, 110, 261, 633
TspGWI ACGGA 3 cut(s) 325, 477, 557
TspRI CASTG 1 cut(s) 724
XapI RAATTY 3 cut(s) 664, 769, 828
XceI RCATGY 1 cut(s) 566
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.