Prupe.3G174200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011396
Physical Location & Seq
Reverse (-)
19136601 .. 19138948
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G174200.1

Sequence Viewer

Length: 957 bp
ATGGGCCCCACCATGGGCGGACCTCCTTTCATCCTGACTTCCAGTTCCTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGATGTTGTTGAAGATTGGTGGTGGCACAGCCATGGCTGTCCCTCGTAGAACTTTATGGAGGAGACCCATGTGCTTGGCTTCCAACGTCGACACCGAGCAGCTACGTGTTCAACTCGTTCAGCTCCATTCTGAGGCTGAGAGCGCCAGAGGCAAAGCAAACAATGCAAGGTTGAGGCTTCTTCGACTGTCAGAGACAGCTGAGAATCTTAAAAGGCAAGCAGCAATTAATGTCCAAACTGGGAAGGAAGATGATGCAAGGGAACTACTCTTTCAGAAGAAAAAGGTCATAGAAGCATTGGAGAAGTCCAAAAAACGCTTAGAATTGCTTGATGAGCTTTCCTCAAAGCTTAATGAGGCGATTTCTCTAAAAGAAAGGCAGCTAATTGGGAATGTTACTTTGGATCTAGAAGTTGTCAGAGATGATGCTTTCAGTCCAGTTCGAATTGTATCCCCAACACCAGATGTTGCAGAAGATTTGGAGGAGGGCAAAGAATTTGCCTCTAATGATCTGAAGCTCAGCAATGATGAAGAAAAGTCGCTTCTTGCAGAGAGCCAAGCAAGCGTACCTGTTGAGCCAGAGGGGGAGGATCTTCGAGAACCTTTAAATAAGGGAGCTTGGAATGAAGATGAGATAATTACTAGCTTGAAGGGAATAACCTCTTTTGAGAAATTCTTGGAACATCTGGATCATCAACTTAACAAAATTGAAGCAGAACTTGTCACTATTTTAAGAATCTCAACCTTGGTAGTGGACAGCCAGGAGAAACCAAAAAATTTTAAGGTGCAACAAATAATGGAACTTCTTGAGAGTATCGCTGGCGTTAGACAGAGAATTTCAAGTATCAAGATGGCAAATGTGGAGATCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

35.89

Weight (kDa)

5.33

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06510
fragaria_vesca FvH4_6g38360 FvH4_6g38360
malus_domestica MD09G1150800.v1.1 MD17G1138200.v1.1
prunus_persica Prupe.3G174200_v2.0.a1
pyrus_communis pycom09g07060 pycom17g13140
rosa_chinensis RchiOBHm_Chr2g0151671
rosa_laevigata RLG00000020567
rosa_multiflora Rmu_sc0005294.1_g000050
rosa_roxburghii Rroxscaffold_2G00096270
rosa_rugosa Rorug02G0427700 Rorug02G0427800 Rorug02G0427900
rosa_samantha Rh2AG488600 Rh2BG501300 Rh2CG475100 Rh2DG512400
rosa_wichuraiana Rw2G040070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AciI CCGC 1 cut(s) 18
AclWI GGATC 3 cut(s) 495, 681, 780
AcsI RAATTY 4 cut(s) 578, 755, 859, 918
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 651
AfiI CCNNNNNNNGG 3 cut(s) 13, 14, 217
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 5 cut(s) 97, 197, 733, 794, 924
AjnI CCWGG 1 cut(s) 843
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 9 cut(s) 187, 208, 284, 421, 433, 466, 601, 701, 729
AluI AGCT 9 cut(s) 187, 208, 284, 421, 433, 466, 601, 701, 729
Alw26I GTCTC 2 cut(s) 142, 272
AlwI GGATC 3 cut(s) 495, 681, 780
AoxI GGCC 1 cut(s) 4
ApaI GGGCCC 1 cut(s) 8
ApeKI GCWGC 3 cut(s) 184, 305, 463
ApoI RAATTY 4 cut(s) 578, 755, 859, 918
AseI ATTAAT 1 cut(s) 312
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 3 cut(s) 4, 5, 20
AsuII TTCGAA 1 cut(s) 526
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 196, 317, 475
BccI CCATC 1 cut(s) 928
BciT130I CCWGG 1 cut(s) 845
BciVI GTATCC 1 cut(s) 544
BcoDI GTCTC 2 cut(s) 142, 272
BfaI CTAG 2 cut(s) 491, 726
BfoI RGCGCY 1 cut(s) 231
BfuI GTATCC 1 cut(s) 544
BisI GCNGC 3 cut(s) 185, 306, 464
BlpI GCTNAGC 1 cut(s) 602
BlsI GCNGC 3 cut(s) 186, 307, 465
Bme1390I CCNGG 1 cut(s) 845
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 3 cut(s) 4, 5, 20
BmiI GGNNCC 2 cut(s) 6, 7
BmrFI CCNGG 1 cut(s) 845
BmrI ACTGGG 1 cut(s) 333
BmsI GCATC 2 cut(s) 328, 499
BmuI ACTGGG 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 410, 442
Bpu1102I GCTNAGC 1 cut(s) 602
Bpu14I TTCGAA 1 cut(s) 526
BpuEI CTTGAG 1 cut(s) 911
BsaAI YACGTR 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 3 cut(s) 12, 117, 828
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 14, 217
Bse1I ACTGG 3 cut(s) 42, 328, 521
Bse3DI GCAATG 1 cut(s) 613
BseBI CCWGG 1 cut(s) 845
BseDI CCNNGG 3 cut(s) 12, 117, 828
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 3 cut(s) 13, 14, 217
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 5 cut(s) 42, 207, 213, 276, 616
BseNI ACTGG 3 cut(s) 42, 328, 521
BseRI GAGGAG 2 cut(s) 160, 581
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 3 cut(s) 196, 317, 475
BshFI GGCC 1 cut(s) 6
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 3 cut(s) 13, 14, 217
BsmAI GTCTC 2 cut(s) 142, 272
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 6
Bso31I GGTCTC 1 cut(s) 142
Bsp119I TTCGAA 1 cut(s) 526
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 487, 592, 673, 772, 948
Bsp1720I GCTNAGC 1 cut(s) 602
Bsp19I CCATGG 2 cut(s) 12, 117
BspACI CCGC 1 cut(s) 18
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 5 cut(s) 43, 208, 214, 277, 615
BspLI GGNNCC 2 cut(s) 6, 7
BspPI GGATC 3 cut(s) 495, 681, 780
BspT104I TTCGAA 1 cut(s) 526
BspTNI GGTCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 613
BsrI ACTGG 3 cut(s) 42, 328, 521
BssECI CCNNGG 3 cut(s) 12, 117, 828
BssMI GATC 5 cut(s) 487, 592, 673, 772, 948
BssT1I CCWWGG 3 cut(s) 12, 117, 828
Bst2UI CCWGG 1 cut(s) 845
Bst4CI ACNGT 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 526
BstC8I GCNNGC 3 cut(s) 303, 646, 904
BstDEI CTNAG 6 cut(s) 51, 216, 222, 285, 403, 602
BstDSI CCRYGG 2 cut(s) 12, 117
BstF5I GGATG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 5 cut(s) 490, 595, 676, 775, 951
BstMAI GTCTC 2 cut(s) 142, 272
BstMBI GATC 5 cut(s) 487, 592, 673, 772, 948
BstMWI GCNNNNNNNGC 5 cut(s) 227, 234, 248, 418, 645
BstNI CCWGG 1 cut(s) 845
BstSCI CCNGG 1 cut(s) 843
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 196, 317, 475
BstX2I RGATCY 2 cut(s) 487, 673
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 2 cut(s) 487, 673
BsuI GTATCC 1 cut(s) 544
BsuRI GGCC 1 cut(s) 6
BtgI CCRYGG 2 cut(s) 12, 117
BtsCI GGATG 1 cut(s) 30
Cac8I GCNNGC 3 cut(s) 303, 646, 904
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 3 cut(s) 4, 5, 20
Csp6I GTAC 1 cut(s) 650
CviAII CATG 3 cut(s) 13, 118, 154
CviQI GTAC 1 cut(s) 650
DdeI CTNAG 6 cut(s) 51, 216, 222, 285, 403, 602
DpnI GATC 5 cut(s) 489, 594, 675, 774, 950
DpnII GATC 5 cut(s) 487, 592, 673, 772, 948
DraI TTTAAA 1 cut(s) 690
EciI GGCGGA 1 cut(s) 33
Eco130I CCWWGG 3 cut(s) 12, 117, 828
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 843
EcoT14I CCWWGG 3 cut(s) 12, 117, 828
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 3 cut(s) 12, 117, 828
FaeI CATG 3 cut(s) 16, 121, 157
FaiI YATR 5 cut(s) 14, 119, 142, 155, 374
FalI AAGNNNNNCTT 2 cut(s) 786, 818
FaqI GGGAC 1 cut(s) 110
FatI CATG 3 cut(s) 12, 117, 153
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 185, 306, 464
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 185, 306, 464
FspBI CTAG 2 cut(s) 491, 726
GlaI GCGC 1 cut(s) 229
GluI GCNGC 3 cut(s) 185, 306, 464
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 1 cut(s) 6
HhaI GCGC 1 cut(s) 230
Hin1II CATG 3 cut(s) 16, 121, 157
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 2 cut(s) 289, 819
Hpy166II GTNNAC 2 cut(s) 175, 838
Hpy188I TCNGA 7 cut(s) 52, 217, 277, 360, 503, 597, 953
Hpy188III TCNNGA 6 cut(s) 34, 491, 680, 770, 890, 931
Hpy8I GTNNAC 2 cut(s) 175, 838
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 322, 727
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 2 cut(s) 171, 190
HpyCH4V TGCA 5 cut(s) 251, 341, 554, 632, 871
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 234, 248, 418, 645
HpyF3I CTNAG 6 cut(s) 51, 216, 222, 285, 403, 602
HpySE526I ACGT 2 cut(s) 171, 190
Hsp92II CATG 3 cut(s) 16, 121, 157
HspAI GCGC 1 cut(s) 228
Kzo9I GATC 5 cut(s) 487, 592, 673, 772, 948
LmnI GCTCC 2 cut(s) 213, 698
Lsp1109I GCAGC 3 cut(s) 196, 317, 475
LweI GCATC 2 cut(s) 328, 499
MaeI CTAG 2 cut(s) 491, 726
MaeII ACGT 2 cut(s) 171, 190
MaeIII GTNAC 2 cut(s) 478, 805
MalI GATC 5 cut(s) 489, 594, 675, 774, 950
MboI GATC 5 cut(s) 487, 592, 673, 772, 948
MboII GAAGA 8 cut(s) 109, 257, 344, 373, 569, 626, 668, 722
MflI RGATCY 2 cut(s) 487, 673
MhlI GDGCHC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 192
MseI TTAA 7 cut(s) 294, 312, 435, 689, 783, 815, 864
MslI CAYNNNNRTG 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 845
MvaI CCWGG 1 cut(s) 845
MwoI GCNNNNNNNGC 5 cut(s) 227, 234, 248, 418, 645
NcoI CCATGG 2 cut(s) 12, 117
NdeII GATC 5 cut(s) 487, 592, 673, 772, 948
NlaIII CATG 3 cut(s) 16, 121, 157
NlaIV GGNNCC 2 cut(s) 6, 7
NmuCI GTSAC 1 cut(s) 805
NspV TTCGAA 1 cut(s) 526
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 2 cut(s) 289, 819
PkrI GCNGC 3 cut(s) 186, 307, 465
Ppu21I YACGTR 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 843
PspGI CCWGG 1 cut(s) 843
PspN4I GGNNCC 2 cut(s) 6, 7
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 3 cut(s) 4, 5, 20
PsuI RGATCY 2 cut(s) 487, 673
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 651
RsaNI GTAC 1 cut(s) 650
RseI CAYNNNNRTG 1 cut(s) 116
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 7 cut(s) 294, 312, 435, 689, 783, 815, 864
SatI GCNGC 3 cut(s) 185, 306, 464
Sau3AI GATC 5 cut(s) 487, 592, 673, 772, 948
Sau96I GGNCC 3 cut(s) 4, 5, 20
ScrFI CCNGG 1 cut(s) 845
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 2 cut(s) 328, 499
SfuI TTCGAA 1 cut(s) 526
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
SsiI CCGC 1 cut(s) 18
SspMI CTAG 2 cut(s) 491, 726
StyD4I CCNGG 1 cut(s) 843
StyI CCWWGG 3 cut(s) 12, 117, 828
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 2 cut(s) 174, 193
TaqI TCGA 4 cut(s) 174, 268, 526, 679
TfiI GAWTC 2 cut(s) 289, 819
Tru1I TTAA 7 cut(s) 294, 312, 435, 689, 783, 815, 864
Tru9I TTAA 7 cut(s) 294, 312, 435, 689, 783, 815, 864
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 3 cut(s) 184, 305, 463
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 3 cut(s) 19, 627, 723
VpaK11BI GGWCC 1 cut(s) 20
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 4 cut(s) 578, 755, 859, 918
XbaI TCTAGA 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 2 cut(s) 491, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.