AT1G07040

DUF1338

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010892
Physical Location & Seq
Reverse (-)
2160919 .. 2163387
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07040.1

Sequence Viewer

Length: 1116 bp
ATGATCTCACTCCACTCATCAGCCATTAAAGCCTCTCTCTACGGCTCTTTCCCTTCTTCGTTACGATCAACACTCTCTGTTTCCTTCTCTGCTGGATCTCTTATTCGGCTTCCTTCCGTCGGCAAGCGCAATCTCTCCGTCGTCGTTTCCTCTGGAAGAGACTCCTCGATGTCATCAAACAATGTTTCTCGCGGATCGTCTTCAAAGGTTGCTGCTGAATCTTTCTTCAGGAGTGTCTTAGGGCAGATGGAAACTGTTTACCTAAATCGAAACCCGACGCCTAAATCCGTCTTGGAGCTTGTTCGATCTGTTGATGACCAGCAACTTTGCTATGATCATCTCGCTTTCAGAACGTTTGGGATTGGTGGTTATGGGATTGACTCGCTTGCAAGCTTTTTCCTTGACTATGGATATACACCGATGGATGAGCTAAAATTTCCGGCCAAAAAGCTTAGAGCTTTGTGGTTTGCACCTCCTAATGCTTCTGCTGTTCCTGGTGGCAGCGGCGTTAACGGTCCTTTACCGAGAGTTTTTATCTCAGAGCTCCTGGTGGACCAGATGAGTTCACAGACTCAGGATGTAATCAGAAAATACACGGAAGCATCACCTAATGGGAAAAAGTATGCTGGACTTTCTAGTGCTTTGGGTACTTTAACTTGGGAAAAGCCTCTATCTTCTGAGTTTGAGCAATTGGCTAGGGAAAGTGAATACGCAGCATGGACCCTTGTCAATGGATATGCACTTAACCACGTCACGATTTCTGTTCATCGGCTTAAATCTCATCTAAACAAAATCAAGAAGCTCAATCAGTTCCTCGAAGAAAAAGGTATCAAATTGAACTCAGAAGGAGGAGTCCTTAAAGTTAGCCCTGATGGTGGTTTGCAGCAAAGCTCAACTGTAGCAGATTCGATATCTTTCAAGTTCGCTGATGGTGTTACCAAATCTATCCCTTGTTCATACATTGAGTTTGCTGAACGCCTTGTACTTCCGCAGTACCAAAATATACCCGAAAGCGAGATACAAGAGTCTCATCGACGTGATGGATTTGAGGTCGGAAATGCTGACAAGATCTTCGAGAGCACATTTCAGGAGCAGCTTTCCCGACGAACCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1338

Protein Analysis

371

Amino Acids

40.64

Weight (kDa)

8.85

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HGLS PF07063 81 - 329 1.8e-41 2-oxoadipate dioxygenase/decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 192
AciI CCGC 3 cut(s) 192, 504, 989
AclI AACGTT 1 cut(s) 353
AclWI GGATC 2 cut(s) 103, 202
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 434
AcuI CTGAAG 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 3 cut(s) 649, 984, 995
AfiI CCNNNNNNNGG 2 cut(s) 119, 875
AgsI TTSAA 3 cut(s) 204, 838, 919
AjiI CACGTC 2 cut(s) 751, 1037
AjnI CCWGG 2 cut(s) 493, 546
AluBI AGCT 9 cut(s) 298, 393, 430, 451, 458, 544, 802, 891, 1096
AluI AGCT 9 cut(s) 298, 393, 430, 451, 458, 544, 802, 891, 1096
Alw21I GWGCWC 2 cut(s) 546, 1082
Alw26I GTCTC 2 cut(s) 153, 1032
AlwI GGATC 2 cut(s) 103, 202
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 5 cut(s) 212, 501, 713, 883, 1093
ApoI RAATTY 1 cut(s) 434
ArsI GACNNNNNNTTYG 2 cut(s) 1055, 1087
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 3 cut(s) 515, 553, 720
AsuC2I CCSGG 1 cut(s) 1111
AsuHPI GGTGA 1 cut(s) 597
AvaII GGWCC 3 cut(s) 515, 553, 720
BaeI ACNNNNGTAYC 2 cut(s) 1010, 1043
BanII GRGCYC 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 546, 1082
BbvI GCAGC 5 cut(s) 199, 513, 725, 895, 1105
BccI CCATC 5 cut(s) 241, 415, 866, 923, 1034
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 495, 548
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 1111
BcoDI GTCTC 2 cut(s) 153, 1032
BfaI CTAG 2 cut(s) 636, 696
BfmI CTRYAG 1 cut(s) 897
BglII AGATCT 1 cut(s) 1068
BisI GCNGC 6 cut(s) 213, 502, 505, 714, 884, 1094
BlsI GCNGC 6 cut(s) 214, 503, 506, 715, 885, 1095
Bme1390I CCNGG 3 cut(s) 495, 548, 1111
Bme18I GGWCC 3 cut(s) 515, 553, 720
BmgBI CACGTC 2 cut(s) 751, 1037
BmgT120I GGNCC 3 cut(s) 515, 553, 720
BmiI GGNNCC 1 cut(s) 722
BmrFI CCNGG 3 cut(s) 495, 548, 1111
BmsI GCATC 1 cut(s) 611
BoxI GACNNNNGTC 1 cut(s) 725
BpiI GAAGAC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 1111
BsaHI GRCGYC 1 cut(s) 278
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 875
BseBI CCWGG 2 cut(s) 495, 548
BseGI GGATG 2 cut(s) 430, 583
BseLI CCNNNNNNNGG 2 cut(s) 119, 875
BseMII CTCAG 4 cut(s) 552, 587, 669, 855
BseRI GAGGAG 2 cut(s) 154, 864
BseXI GCAGC 5 cut(s) 199, 513, 725, 895, 1105
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 443
BsiHKAI GWGCWC 2 cut(s) 546, 1082
BsiSI CCGG 2 cut(s) 440, 1110
BslI CCNNNNNNNGG 2 cut(s) 119, 875
BsmAI GTCTC 2 cut(s) 153, 1032
BsnI GGCC 1 cut(s) 443
Bsp1286I GDGCHC 2 cut(s) 546, 1082
Bsp143I GATC 7 cut(s) 3, 65, 95, 194, 305, 334, 1068
BspACI CCGC 3 cut(s) 192, 504, 989
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 4 cut(s) 551, 586, 670, 854
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 722
BspPI GGATC 2 cut(s) 103, 202
BssMI GATC 7 cut(s) 3, 65, 95, 194, 305, 334, 1068
BssNI GRCGYC 1 cut(s) 278
Bst2UI CCWGG 2 cut(s) 495, 548
Bst4CI ACNGT 3 cut(s) 256, 515, 898
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 278
BstC8I GCNNGC 3 cut(s) 125, 387, 391
BstDEI CTNAG 6 cut(s) 238, 452, 538, 573, 678, 841
BstF5I GGATG 2 cut(s) 430, 583
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 7 cut(s) 6, 68, 98, 197, 308, 337, 1071
BstMAI GTCTC 2 cut(s) 153, 1032
BstMBI GATC 7 cut(s) 3, 65, 95, 194, 305, 334, 1068
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 2 cut(s) 495, 548
BstPAI GACNNNNGTC 1 cut(s) 725
BstSCI CCNGG 3 cut(s) 493, 546, 1109
BstSFI CTRYAG 1 cut(s) 897
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 5 cut(s) 199, 513, 725, 895, 1105
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 2 cut(s) 95, 1068
BstYI RGATCY 2 cut(s) 95, 1068
BsuRI GGCC 1 cut(s) 443
BtrI CACGTC 2 cut(s) 751, 1037
BtsCI GGATG 2 cut(s) 430, 583
Cac8I GCNNGC 3 cut(s) 125, 387, 391
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 3 cut(s) 515, 553, 720
CseI GACGC 1 cut(s) 286
Csp6I GTAC 3 cut(s) 648, 983, 994
CviAII CATG 1 cut(s) 717
CviQI GTAC 3 cut(s) 648, 983, 994
DdeI CTNAG 6 cut(s) 238, 452, 538, 573, 678, 841
DpnI GATC 7 cut(s) 5, 67, 97, 196, 307, 336, 1070
DpnII GATC 7 cut(s) 3, 65, 95, 194, 305, 334, 1068
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 546
Eco32I GATATC 1 cut(s) 912
Eco47I GGWCC 3 cut(s) 515, 553, 720
Eco53kI GAGCTC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 544
EcoRII CCWGG 2 cut(s) 493, 546
EcoRV GATATC 1 cut(s) 912
EcoT38I GRGCYC 1 cut(s) 546
FaeI CATG 1 cut(s) 720
FaiI YATR 9 cut(s) 333, 372, 408, 414, 624, 718, 738, 958, 1004
FatI CATG 1 cut(s) 716
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 6 cut(s) 213, 502, 505, 714, 884, 1094
FokI GGATG 2 cut(s) 437, 590
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 6 cut(s) 213, 502, 505, 714, 884, 1094
FspBI CTAG 2 cut(s) 636, 696
GlaI GCGC 1 cut(s) 128
GluI GCNGC 6 cut(s) 213, 502, 505, 714, 884, 1094
HaeIII GGCC 1 cut(s) 443
HapII CCGG 2 cut(s) 440, 1110
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 1 cut(s) 720
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HindIII AAGCTT 2 cut(s) 391, 449
HinfI GANTC 7 cut(s) 161, 218, 380, 571, 852, 905, 1025
HpaI GTTAAC 1 cut(s) 511
HpaII CCGG 2 cut(s) 440, 1110
HphI GGTGA 1 cut(s) 597
Hpy166II GTNNAC 4 cut(s) 259, 511, 553, 566
Hpy188I TCNGA 6 cut(s) 350, 541, 587, 679, 844, 1055
Hpy188III TCNNGA 8 cut(s) 153, 229, 575, 754, 796, 1075, 1088, 1101
Hpy8I GTNNAC 4 cut(s) 259, 511, 553, 566
Hpy99I CGWCG 6 cut(s) 122, 143, 146, 280, 1038, 1107
HpyAV CCTTC 4 cut(s) 63, 94, 123, 839
HpyCH4III ACNGT 3 cut(s) 256, 515, 898
HpyCH4IV ACGT 3 cut(s) 353, 750, 1036
HpyCH4V TGCA 4 cut(s) 389, 470, 740, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 6 cut(s) 238, 452, 538, 573, 678, 841
HpySE526I ACGT 3 cut(s) 353, 750, 1036
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 1 cut(s) 720
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 334
KspAI GTTAAC 1 cut(s) 511
Kzo9I GATC 7 cut(s) 3, 65, 95, 194, 305, 334, 1068
LmnI GCTCC 3 cut(s) 295, 549, 1090
Lsp1109I GCAGC 5 cut(s) 199, 513, 725, 895, 1105
LweI GCATC 1 cut(s) 611
MaeI CTAG 2 cut(s) 636, 696
MaeII ACGT 3 cut(s) 353, 750, 1036
MaeIII GTNAC 3 cut(s) 60, 751, 934
MalI GATC 7 cut(s) 5, 67, 97, 196, 307, 336, 1070
MboI GATC 7 cut(s) 3, 65, 95, 194, 305, 334, 1068
MboII GAAGA 7 cut(s) 48, 168, 192, 217, 666, 830, 1063
MfeI CAATTG 1 cut(s) 689
MflI RGATCY 2 cut(s) 95, 1068
MhlI GDGCHC 2 cut(s) 546, 1082
MluCI AATT 3 cut(s) 434, 689, 833
MlyI GAGTC 5 cut(s) 155, 374, 565, 861, 1034
MmeI TCCRAC 1 cut(s) 1033
MnlI CCTC 8 cut(s) 43, 160, 175, 483, 678, 824, 842, 1042
MseI TTAA 6 cut(s) 27, 510, 653, 744, 774, 858
MslI CAYNNNNRTG 1 cut(s) 1035
MspA1I CMGCKG 1 cut(s) 504
MspI CCGG 2 cut(s) 440, 1110
MspR9I CCNGG 3 cut(s) 495, 548, 1111
MunI CAATTG 1 cut(s) 689
MvaI CCWGG 2 cut(s) 495, 548
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 1111
NdeII GATC 7 cut(s) 3, 65, 95, 194, 305, 334, 1068
NlaIII CATG 1 cut(s) 720
NlaIV GGNNCC 1 cut(s) 722
NmuCI GTSAC 1 cut(s) 751
PfeI GAWTC 2 cut(s) 218, 905
PkrI GCNGC 6 cut(s) 214, 503, 506, 715, 885, 1095
PleI GAGTC 5 cut(s) 155, 374, 565, 860, 1033
PpsI GAGTC 5 cut(s) 155, 374, 565, 860, 1033
PshAI GACNNNNGTC 1 cut(s) 725
Psp124BI GAGCTC 1 cut(s) 546
Psp1406I AACGTT 1 cut(s) 353
Psp6I CCWGG 2 cut(s) 493, 546
PspGI CCWGG 2 cut(s) 493, 546
PspN4I GGNNCC 1 cut(s) 722
PspPI GGNCC 3 cut(s) 515, 553, 720
PsrI GAACNNNNNNTAC 2 cut(s) 966, 998
PsuI RGATCY 2 cut(s) 95, 1068
RsaI GTAC 3 cut(s) 649, 984, 995
RsaNI GTAC 3 cut(s) 648, 983, 994
RseI CAYNNNNRTG 1 cut(s) 1035
SacI GAGCTC 1 cut(s) 546
SaqAI TTAA 6 cut(s) 27, 510, 653, 744, 774, 858
SatI GCNGC 6 cut(s) 213, 502, 505, 714, 884, 1094
Sau3AI GATC 7 cut(s) 3, 65, 95, 194, 305, 334, 1068
Sau96I GGNCC 3 cut(s) 515, 553, 720
SchI GAGTC 5 cut(s) 155, 374, 565, 861, 1034
ScrFI CCNGG 3 cut(s) 495, 548, 1111
SduI GDGCHC 2 cut(s) 546, 1082
SfaNI GCATC 1 cut(s) 611
SfcI CTRYAG 1 cut(s) 897
SinI GGWCC 3 cut(s) 515, 553, 720
SmiMI CAYNNNNRTG 1 cut(s) 1035
Sse9I AATT 3 cut(s) 434, 689, 833
SsiI CCGC 3 cut(s) 192, 504, 989
SspMI CTAG 2 cut(s) 636, 696
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 3 cut(s) 493, 546, 1109
TaaI ACNGT 3 cut(s) 256, 515, 898
TaiI ACGT 3 cut(s) 356, 753, 1039
TaqI TCGA 7 cut(s) 167, 268, 304, 816, 908, 1033, 1074
TasI AATT 3 cut(s) 434, 689, 833
TatI WGTACW 1 cut(s) 982
TauI GCSGC 1 cut(s) 507
TfiI GAWTC 2 cut(s) 218, 905
Tru1I TTAA 6 cut(s) 27, 510, 653, 744, 774, 858
Tru9I TTAA 6 cut(s) 27, 510, 653, 744, 774, 858
TseFI GTSAC 1 cut(s) 751
TseI GCWGC 5 cut(s) 212, 501, 713, 883, 1093
Tsp45I GTSAC 1 cut(s) 751
TspDTI ATGAA 2 cut(s) 755, 945
TspGWI ACGGA 4 cut(s) 106, 127, 277, 611
VpaK11BI GGWCC 3 cut(s) 515, 553, 720
XapI RAATTY 1 cut(s) 434
XspI CTAG 2 cut(s) 636, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.