Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010892

Physical Location & Seq

Genomic Coordinates Reverse (-)

27530537 .. 27534085

Gene Structure 3549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G268000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAGACTGTCCAGAATGTTGCCCTTAAGCTCATCAGCCATTAACAACGGCTCTCATATTTCCTCATCAACTTTGCCCTCATCCTTCTACTCTCTCACTCCTCGCCAACCCAGCATTAACCCCAAAAATCCCATCACCAGGAATTTCATCTCCCTCAACAAATCATCGTTTTCTCCCCTCAAATATTCAATCTTCACCAACAAGCAATACATGTCCACCGTTTGTAGCTCCAAATCTGACAATGGATCCCACGATTCCCCTTTCCAGGGAGGTGAATCATTTTTCAGGGAAGTGTTGGCAAGTATGGAGGCTGTCTATTTGAGCAGGAACCCAACAGCAAAAGCAGTGTTGGAGCTCGTTGGGTCGGTTGCTGATGACCAAATTTGCTATGATCATTTCGCTTTTAGGACATTTGGGGTGAATGGTTATGGGATTGACTCCATGGCTAAATTTTTCCTGGATTTCGGGTACACGCCGCGGGAGGAGTTAAGATTCCCTGCTAAAAAATTGAGAGCATTGTGGTTTTCTCCTCCCAGTGTTCCAACTTCTCGTGGTGGCAGTGGTGTTAATGGACCTTTACCAAGAGTGTTTGTATCTGAGCTTCTTGTGGATCAGATGAGTCCACAAACTCAGGATATAATCAAAAAGTACACTGGAATATCTGGTTCTGGAAATAAACATGCTGCTCTAGCAAGTGCACTGGGATCGTTAACGTGGGAAAAGCCATTGCATTCTGAATTTCAACAATTGGCTAGGGAAAGCGAATATGCTGCCTGGACCCTTGTCAATGGGTATGCACTAAACCATGCCACTATCTCAACTCATCAGCTGAAATCTCGATTGAGAGATATTAAAAACCTCAATCAGTTCATTGAGAAGAATGGGTTCAAGTTGAATTCTGAAGGGGGAACTCTGAAAGTGAGCCCCGATGGCCTTCTTCAGCAAAGTTCAACTGTCGCAGATTCAATTCATTTCCAATTTTCTGATGGTCTAACTGAATCAGTCCCCTGCTCCTATATCGAGTTTGCTGAGCGCCTGGTGCTGCCTCAGTACAGTAATCTACCCCTTGAAGAGGTCAAAGAGCATCACAGGCGAGATGGATTTGAGGTTGGAAATGCTGACAAGATCTTCGAGAGTACATCCAAAGAGCAGCTGACCAGGAAGGCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1338

Protein Analysis

391

Amino Acids

43.22

Weight (kDa)

8.77

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07040
fragaria_vesca	FvH4_4g31940 FvH4_4g31940 FvH4_4g31940 FvH4_4g31940
malus_domestica	MD16G1078500.v1.1
prunus_persica	Prupe.1G268000_v2.0.a1 Prupe.1G268000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0440591
rosa_laevigata	RLG00000006165
rosa_multiflora	Rmu_co8207494.1_g000001 Rmu_sc0008018.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381420
rosa_rugosa	Rorug04G0326900
rosa_samantha	Rh4AG378800 Rh4BG391400 Rh4CG406100 Rh4DG385300
rosa_wichuraiana	Rw4G032530 Rw4G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	478
AciI	CCGC	2 cut(s)	476, 478
AclWI	GGATC	4 cut(s)	240, 253, 618, 712
AcsI	RAATTY	5 cut(s)	142, 381, 449, 737, 895
AcuI	CTGAAG	2 cut(s)	921, 923
AfaI	GTAC	4 cut(s)	470, 650, 1052, 1138
AfiI	CCNNNNNNNGG	4 cut(s)	138, 265, 266, 1072
AflII	CTTAAG	1 cut(s)	25
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	7 cut(s)	189, 743, 889, 895, 951, 966, 1070
AjnI	CCWGG	6 cut(s)	137, 264, 456, 773, 1035, 1157
AluBI	AGCT	6 cut(s)	30, 228, 355, 601, 829, 1153
AluI	AGCT	6 cut(s)	30, 228, 355, 601, 829, 1153
Alw21I	GWGCWC	2 cut(s)	357, 700
Alw44I	GTGCAC	1 cut(s)	696
AlwI	GGATC	4 cut(s)	240, 253, 618, 712
AoxI	GGCC	1 cut(s)	931
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	4 cut(s)	683, 770, 1042, 1150
ApoI	RAATTY	5 cut(s)	142, 381, 449, 737, 895
ArsI	GACNNNNNNTTYG	2 cut(s)	1112, 1144
Asp700I	GAANNNNTTC	1 cut(s)	884
AspLEI	GCGC	1 cut(s)	1035
AspS9I	GGNCC	2 cut(s)	572, 777
AsuHPI	GGTGA	4 cut(s)	127, 187, 284, 430
AvaII	GGWCC	2 cut(s)	572, 777
BaeGI	GKGCMC	1 cut(s)	700
BamHI	GGATCC	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	357, 926
BarI	GAAGNNNNNNTAC	2 cut(s)	585, 617
BauI	CACGAG	1 cut(s)	549
Bbv12I	GWGCWC	2 cut(s)	357, 700
BbvI	GCAGC	4 cut(s)	670, 757, 1029, 1162
BccI	CCATC	4 cut(s)	140, 923, 980, 1091
BceAI	ACGGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	4 cut(s)	687, 721, 752, 786
BciT130I	CCWGG	6 cut(s)	139, 266, 458, 775, 1037, 1159
BclI	TGATCA	1 cut(s)	391
BfaI	CTAG	2 cut(s)	689, 753
BfoI	RGCGCY	1 cut(s)	1036
BfrI	CTTAAG	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	930
BglII	AGATCT	1 cut(s)	1125
BisI	GCNGC	5 cut(s)	476, 684, 771, 1043, 1151
BlpI	GCTNAGC	1 cut(s)	1029
BlsI	GCNGC	5 cut(s)	477, 685, 772, 1044, 1152
Bme1390I	CCNGG	6 cut(s)	139, 266, 458, 775, 1037, 1159
Bme18I	GGWCC	2 cut(s)	572, 777
BmgT120I	GGNCC	2 cut(s)	572, 777
BmiI	GGNNCC	3 cut(s)	247, 329, 779
BmrFI	CCNGG	6 cut(s)	139, 266, 458, 775, 1037, 1159
BmrI	ACTGGG	2 cut(s)	528, 710
BmsI	GCATC	1 cut(s)	1093
BmuI	ACTGGG	2 cut(s)	528, 710
BoxI	GACNNNNGTC	1 cut(s)	782
Bpu1102I	GCTNAGC	1 cut(s)	1029
BsaJI	CCNNGG	3 cut(s)	265, 441, 476
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 265, 266, 1072
Bse1I	ACTGG	3 cut(s)	534, 658, 705
Bse3DI	GCAATG	1 cut(s)	725
BseBI	CCWGG	6 cut(s)	139, 266, 458, 775, 1037, 1159
BseDI	CCNNGG	3 cut(s)	265, 441, 476
BseGI	GGATG	2 cut(s)	80, 1139
BseLI	CCNNNNNNNGG	4 cut(s)	138, 265, 266, 1072
BseMI	GCAATG	1 cut(s)	725
BseMII	CTCAG	4 cut(s)	588, 644, 1020, 1061
BseNI	ACTGG	3 cut(s)	534, 658, 705
BseRI	GAGGAG	3 cut(s)	90, 497, 519
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	4 cut(s)	670, 757, 1029, 1162
BseYI	CCCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	1 cut(s)	933
BsiHKAI	GWGCWC	2 cut(s)	357, 700
BslFI	GGGAC	1 cut(s)	989
BslI	CCNNNNNNNGG	4 cut(s)	138, 265, 266, 1072
BsmFI	GGGAC	1 cut(s)	989
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	1 cut(s)	933
Bsp1286I	GDGCHC	3 cut(s)	357, 700, 926
Bsp143I	GATC	5 cut(s)	245, 391, 610, 704, 1125
Bsp1720I	GCTNAGC	1 cut(s)	1029
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	2 cut(s)	476, 478
BspANI	GGCC	1 cut(s)	933
BspCNI	CTCAG	4 cut(s)	589, 643, 1021, 1060
BspFNI	CGCG	1 cut(s)	478
BspLI	GGNNCC	3 cut(s)	247, 329, 779
BspPI	GGATC	4 cut(s)	240, 253, 618, 712
BspTI	CTTAAG	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	725
BsrI	ACTGG	3 cut(s)	534, 658, 705
BssECI	CCNNGG	3 cut(s)	265, 441, 476
BssMI	GATC	5 cut(s)	245, 391, 610, 704, 1125
BssSI	CACGAG	1 cut(s)	549
BssT1I	CCWWGG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	549
Bst2UI	CCWGG	6 cut(s)	139, 266, 458, 775, 1037, 1159
Bst4CI	ACNGT	4 cut(s)	9, 220, 955, 1055
Bst6I	CTCTTC	1 cut(s)	1065
BstAFI	CTTAAG	1 cut(s)	25
BstDEI	CTNAG	4 cut(s)	597, 630, 1029, 1047
BstDSI	CCRYGG	2 cut(s)	441, 476
BstENI	CCTNNNNNAGG	1 cut(s)	1070
BstF5I	GGATG	2 cut(s)	80, 1139
BstFNI	CGCG	1 cut(s)	478
BstH2I	RGCGCY	1 cut(s)	1036
BstHHI	GCGC	1 cut(s)	1035
BstKTI	GATC	5 cut(s)	248, 394, 613, 707, 1128
BstMBI	GATC	5 cut(s)	245, 391, 610, 704, 1125
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 689, 930, 1039, 1090
BstNI	CCWGG	6 cut(s)	139, 266, 458, 775, 1037, 1159
BstNSI	RCATGY	2 cut(s)	214, 683
BstPAI	GACNNNNGTC	1 cut(s)	782
BstSCI	CCNGG	6 cut(s)	137, 264, 456, 773, 1035, 1157
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	4 cut(s)	670, 757, 1029, 1162
BstX2I	RGATCY	2 cut(s)	245, 1125
BstYI	RGATCY	2 cut(s)	245, 1125
BsuRI	GGCC	1 cut(s)	933
BtgI	CCRYGG	2 cut(s)	441, 476
BtsCI	GGATG	2 cut(s)	80, 1139
BtsI	GCAGTG	2 cut(s)	351, 565
BtsIMutI	CAGTG	5 cut(s)	351, 541, 565, 651, 698
CfoI	GCGC	1 cut(s)	1035
Cfr13I	GGNCC	2 cut(s)	572, 777
Cfr42I	CCGCGG	1 cut(s)	479
Csp6I	GTAC	4 cut(s)	469, 649, 1051, 1137
CviAII	CATG	4 cut(s)	211, 442, 680, 806
CviQI	GTAC	4 cut(s)	469, 649, 1051, 1137
DdeI	CTNAG	4 cut(s)	597, 630, 1029, 1047
DpnI	GATC	5 cut(s)	247, 393, 612, 706, 1127
DpnII	GATC	5 cut(s)	245, 391, 610, 704, 1125
Eam1104I	CTCTTC	1 cut(s)	1065
EarI	CTCTTC	1 cut(s)	1065
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	441
Eco24I	GRGCYC	2 cut(s)	357, 926
Eco47I	GGWCC	2 cut(s)	572, 777
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	921, 923
EcoICRI	GAGCTC	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	1070
EcoRI	GAATTC	1 cut(s)	895
EcoRII	CCWGG	6 cut(s)	137, 264, 456, 773, 1035, 1157
EcoT14I	CCWWGG	1 cut(s)	441
EcoT38I	GRGCYC	2 cut(s)	357, 926
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	4 cut(s)	214, 445, 683, 809
FaqI	GGGAC	1 cut(s)	989
FatI	CATG	4 cut(s)	210, 441, 679, 805
FauI	CCCGC	1 cut(s)	471
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	476, 684, 771, 1043, 1151
FokI	GGATG	2 cut(s)	67, 1126
FriOI	GRGCYC	2 cut(s)	357, 926
Fsp4HI	GCNGC	5 cut(s)	476, 684, 771, 1043, 1151
FspBI	CTAG	2 cut(s)	689, 753
GlaI	GCGC	1 cut(s)	1034
GluI	GCNGC	5 cut(s)	476, 684, 771, 1043, 1151
GsaI	CCCAGC	1 cut(s)	114
HaeII	RGCGCY	1 cut(s)	1036
HaeIII	GGCC	1 cut(s)	933
HhaI	GCGC	1 cut(s)	1035
Hin1II	CATG	4 cut(s)	214, 445, 683, 809
Hin6I	GCGC	1 cut(s)	1033
HinP1I	GCGC	1 cut(s)	1033
HincII	GTYRAC	1 cut(s)	711
HindII	GTYRAC	1 cut(s)	711
HinfI	GANTC	7 cut(s)	254, 275, 437, 492, 619, 962, 998
HpaI	GTTAAC	1 cut(s)	711
HphI	GGTGA	4 cut(s)	127, 187, 284, 430
Hpy166II	GTNNAC	6 cut(s)	216, 471, 623, 651, 698, 711
Hpy188I	TCNGA	7 cut(s)	238, 598, 615, 736, 901, 915, 985
Hpy188III	TCNNGA	5 cut(s)	12, 632, 669, 837, 1132
Hpy8I	GTNNAC	6 cut(s)	216, 471, 623, 651, 698, 711
HpyAV	CCTTC	4 cut(s)	94, 896, 944, 1156
HpyCH4III	ACNGT	4 cut(s)	9, 220, 955, 1055
HpyCH4IV	ACGT	1 cut(s)	713
HpyCH4V	TGCA	3 cut(s)	698, 730, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 689, 930, 1039, 1090
HpyF3I	CTNAG	4 cut(s)	597, 630, 1029, 1047
HpySE526I	ACGT	1 cut(s)	713
Hsp92II	CATG	4 cut(s)	214, 445, 683, 809
HspAI	GCGC	1 cut(s)	1033
Ksp22I	TGATCA	1 cut(s)	391
KspAI	GTTAAC	1 cut(s)	711
KspI	CCGCGG	1 cut(s)	479
Kzo9I	GATC	5 cut(s)	245, 391, 610, 704, 1125
LmnI	GCTCC	3 cut(s)	233, 352, 1016
Lsp1109I	GCAGC	4 cut(s)	670, 757, 1029, 1162
LweI	GCATC	1 cut(s)	1093
MaeI	CTAG	2 cut(s)	689, 753
MaeII	ACGT	1 cut(s)	713
MalI	GATC	5 cut(s)	247, 393, 612, 706, 1127
MboI	GATC	5 cut(s)	245, 391, 610, 704, 1125
MboII	GAAGA	5 cut(s)	184, 889, 929, 1082, 1120
MfeI	CAATTG	1 cut(s)	746
MflI	RGATCY	2 cut(s)	245, 1125
MhlI	GDGCHC	3 cut(s)	357, 700, 926
MluCI	AATT	9 cut(s)	142, 381, 449, 506, 737, 746, 895, 966, 977
MlyI	GAGTC	2 cut(s)	431, 628
MmeI	TCCRAC	3 cut(s)	330, 566, 1090
MroXI	GAANNNNTTC	1 cut(s)	884
MseI	TTAA	7 cut(s)	26, 42, 117, 488, 567, 710, 852
MspA1I	CMGCKG	3 cut(s)	478, 829, 1153
MspCI	CTTAAG	1 cut(s)	25
MspR9I	CCNGG	6 cut(s)	139, 266, 458, 775, 1037, 1159
MunI	CAATTG	1 cut(s)	746
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	6 cut(s)	139, 266, 458, 775, 1037, 1159
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	5 cut(s)	111, 689, 930, 1039, 1090
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	5 cut(s)	245, 391, 610, 704, 1125
NlaIII	CATG	4 cut(s)	214, 445, 683, 809
NlaIV	GGNNCC	3 cut(s)	247, 329, 779
NspI	RCATGY	2 cut(s)	214, 683
PciI	ACATGT	1 cut(s)	210
PctI	GAATGC	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	5 cut(s)	254, 275, 492, 962, 998
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	5 cut(s)	477, 685, 772, 1044, 1152
PleI	GAGTC	2 cut(s)	431, 627
PpsI	GAGTC	2 cut(s)	431, 627
PscI	ACATGT	1 cut(s)	210
PshAI	GACNNNNGTC	1 cut(s)	782
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	6 cut(s)	137, 264, 456, 773, 1035, 1157
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	6 cut(s)	137, 264, 456, 773, 1035, 1157
PspN4I	GGNNCC	3 cut(s)	247, 329, 779
PspPI	GGNCC	2 cut(s)	572, 777
PsuI	RGATCY	2 cut(s)	245, 1125
PvuII	CAGCTG	2 cut(s)	829, 1153
RsaI	GTAC	4 cut(s)	470, 650, 1052, 1138
RsaNI	GTAC	4 cut(s)	469, 649, 1051, 1137
SacI	GAGCTC	1 cut(s)	357
SacII	CCGCGG	1 cut(s)	479
SaqAI	TTAA	7 cut(s)	26, 42, 117, 488, 567, 710, 852
SatI	GCNGC	5 cut(s)	476, 684, 771, 1043, 1151
Sau3AI	GATC	5 cut(s)	245, 391, 610, 704, 1125
Sau96I	GGNCC	2 cut(s)	572, 777
SchI	GAGTC	2 cut(s)	431, 628
ScrFI	CCNGG	6 cut(s)	139, 266, 458, 775, 1037, 1159
SduI	GDGCHC	3 cut(s)	357, 700, 926
SfaNI	GCATC	1 cut(s)	1093
Sfr303I	CCGCGG	1 cut(s)	479
SgrBI	CCGCGG	1 cut(s)	479
SinI	GGWCC	2 cut(s)	572, 777
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	9 cut(s)	142, 381, 449, 506, 737, 746, 895, 966, 977
SsiI	CCGC	2 cut(s)	476, 478
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	2 cut(s)	689, 753
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	6 cut(s)	137, 264, 456, 773, 1035, 1157
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	4 cut(s)	9, 220, 955, 1055
TaiI	ACGT	1 cut(s)	716
TaqI	TCGA	3 cut(s)	838, 1020, 1131
TasI	AATT	9 cut(s)	142, 381, 449, 506, 737, 746, 895, 966, 977
TatI	WGTACW	3 cut(s)	648, 1050, 1136
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	5 cut(s)	254, 275, 492, 962, 998
Tru1I	TTAA	7 cut(s)	26, 42, 117, 488, 567, 710, 852
Tru9I	TTAA	7 cut(s)	26, 42, 117, 488, 567, 710, 852
TscAI	CASTG	5 cut(s)	351, 541, 565, 658, 705
TseI	GCWGC	4 cut(s)	683, 770, 1042, 1150
TspDTI	ATGAA	3 cut(s)	136, 859, 959
TspRI	CASTG	5 cut(s)	351, 541, 565, 658, 705
Vha464I	CTTAAG	1 cut(s)	25
VneI	GTGCAC	1 cut(s)	696
VpaK11BI	GGWCC	2 cut(s)	572, 777
XagI	CCTNNNNNAGG	1 cut(s)	1070
XapI	RAATTY	5 cut(s)	142, 381, 449, 737, 895
XceI	RCATGY	2 cut(s)	214, 683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	983
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	2 cut(s)	689, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.