Rh4DG385300

DUF1338

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010892
Physical Location & Seq
Forward (+)
60238757 .. 60241840
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG385300.1

Sequence Viewer

Length: 915 bp
ATGTGGCGGCCAGACAGAACAGGAAGCAAGCAAACGCCACTAAACACATCGAAGAAGTTCAGCCAAAAAAAAAACACATCGAAGAAGAGAAAGAAGATCAAAATATTCCATACCACACAGGATTGTTTCCATTCCAAGGTTGAAGAAGACATGATTACGCGATTCTCCACCACCATGACCATGTTAAGAAGCTCCTCTATCTCCTCCCCATCACTTGACTCTCTCATTCCTCGCCAACCCAACAGTGTCAATCCCACCAGGAATCTCATCTCCCTCACCAAATCACCTCTTCCCCTGAATCTCAGATACTCAATCTCCATGAACAATCAAAATCTCGGCACCGTTTGTAGCTCCAAATCAGACAATGGATCCCATGACCCTTCTTCTTCTCAGGGAGGTGAATCATTCTTCAGGGGAGTGTTGGCAAACATGGAGGCTGTGTACTTGAGCAGGAACCCTACAGCAAAGTCAGTGTTGGAGCTTGTTGGGTCTGATGAACAGATTAGCTATGATCATTTTGCATTCAGGACCTTTGGGGTGAATGGTTATGGGATTGATTCCATGGCTAGATTTTTCTTGGATTTCGGGTACACTCCCCGGGAGGAGTTACGATTCCCGGCTAAGAAATTGAGGGCATTCTGGTTTGCTCCTCCTAGTTATACCATTTCTGATGGTGGTGCTGGTGTTAATGGGCCTTTGCCGAGAATATTTATATCCGAGCTTCTTGTAGATCAGATGAGTCCACAAACTCAGGAGATAATCCGTAAGTACACTGAAAACTCTGGTTCTGGAAATAAGTATGCTGCTCTAGCAAGTGCGCTGGGAACTTTGACGTGGGAAAAGCCGTTGTACTCAGAATTTCAGCAATTGGCTAGGTACTTAATTTTCTATGTGCATTTCTTAACGTTTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1338

Protein Analysis

304

Amino Acids

34.26

Weight (kDa)

9.65

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HGLS PF07063 156 - 263 1.4e-17 2-oxoadipate dioxygenase/decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AccII CGCG 1 cut(s) 160
AciI CCGC 1 cut(s) 7
AclI AACGTT 1 cut(s) 905
AclWI GGATC 2 cut(s) 363, 376
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 1 cut(s) 857
AcuI CTGAAG 1 cut(s) 394
AfaI GTAC 5 cut(s) 443, 590, 770, 851, 878
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 1 cut(s) 143
AjiI CACGTC 1 cut(s) 834
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 5 cut(s) 192, 351, 481, 507, 721
AluI AGCT 5 cut(s) 192, 351, 481, 507, 721
AlwI GGATC 2 cut(s) 363, 376
Ama87I CYCGRG 1 cut(s) 597
AoxI GGCC 2 cut(s) 8, 692
ApeKI GCWGC 1 cut(s) 803
ApoI RAATTY 1 cut(s) 857
Asp700I GAANNNNTTC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 2 cut(s) 528, 692
AsuC2I CCSGG 3 cut(s) 598, 599, 617
AsuHPI GGTGA 4 cut(s) 268, 276, 410, 550
AvaI CYCGRG 1 cut(s) 597
AvaII GGWCC 1 cut(s) 528
BamHI GGATCC 1 cut(s) 368
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 790
BccI CCATC 2 cut(s) 217, 665
BceAI ACGGC 1 cut(s) 829
BciT130I CCWGG 1 cut(s) 259
BclI TGATCA 1 cut(s) 511
BcnI CCSGG 3 cut(s) 598, 599, 617
BfaI CTAG 4 cut(s) 567, 654, 809, 873
BfmI CTRYAG 1 cut(s) 459
BisI GCNGC 2 cut(s) 8, 804
BlsI GCNGC 2 cut(s) 9, 805
Bme1390I CCNGG 4 cut(s) 259, 598, 599, 617
Bme18I GGWCC 1 cut(s) 528
BmeT110I CYCGRG 1 cut(s) 597
BmgBI CACGTC 1 cut(s) 834
BmgT120I GGNCC 2 cut(s) 528, 692
BmiI GGNNCC 3 cut(s) 340, 370, 455
BmrFI CCNGG 4 cut(s) 259, 598, 599, 617
BpiI GAAGAC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 466
BpuMI CCSGG 3 cut(s) 598, 599, 617
BsaAI YACGTR 1 cut(s) 912
BsaJI CCNNGG 4 cut(s) 135, 561, 596, 597
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 425, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 4 cut(s) 135, 561, 596, 597
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 4 cut(s) 316, 404, 764, 867
BseRI GAGGAG 4 cut(s) 184, 193, 617, 639
BseXI GCAGC 1 cut(s) 790
BseYI CCCAGC 1 cut(s) 820
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 2 cut(s) 10, 694
BshNI GGYRCC 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 597
BsiSI CCGG 2 cut(s) 598, 617
BslI CCNNNNNNNGG 1 cut(s) 136
BsmI GAATGC 2 cut(s) 521, 635
BsnI GGCC 2 cut(s) 10, 694
BsoBI CYCGRG 1 cut(s) 597
Bsp143I GATC 4 cut(s) 96, 368, 511, 730
Bsp19I CCATGG 1 cut(s) 561
BspACI CCGC 1 cut(s) 7
BspANI GGCC 2 cut(s) 10, 694
BspCNI CTCAG 4 cut(s) 315, 403, 763, 866
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 340, 370, 455
BspPI GGATC 2 cut(s) 363, 376
BspT107I GGYRCC 1 cut(s) 338
BssECI CCNNGG 4 cut(s) 135, 561, 596, 597
BssMI GATC 4 cut(s) 96, 368, 511, 730
BssT1I CCWWGG 2 cut(s) 135, 561
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 245, 343
Bst6I CTCTTC 2 cut(s) 80, 294
BstBAI YACGTR 1 cut(s) 912
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 5 cut(s) 302, 390, 621, 750, 853
BstDSI CCRYGG 1 cut(s) 561
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 4 cut(s) 99, 371, 514, 733
BstMBI GATC 4 cut(s) 96, 368, 511, 730
BstMWI GCNNNNNNNGC 1 cut(s) 809
BstNI CCWGG 1 cut(s) 259
BstSCI CCNGG 4 cut(s) 257, 596, 597, 615
BstSFI CTRYAG 1 cut(s) 459
BstSNI TACGTA 1 cut(s) 912
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 790
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BsuRI GGCC 2 cut(s) 10, 694
BtgI CCRYGG 1 cut(s) 561
BtrI CACGTC 1 cut(s) 834
BtsIMutI CAGTG 3 cut(s) 250, 477, 771
Cac8I GCNNGC 1 cut(s) 29
CfoI GCGC 1 cut(s) 820
Cfr13I GGNCC 2 cut(s) 528, 692
Cfr9I CCCGGG 1 cut(s) 597
Csp6I GTAC 5 cut(s) 442, 589, 769, 850, 877
CviAII CATG 7 cut(s) 151, 175, 181, 319, 374, 430, 562
CviQI GTAC 5 cut(s) 442, 589, 769, 850, 877
DdeI CTNAG 5 cut(s) 302, 390, 621, 750, 853
DpnI GATC 4 cut(s) 98, 370, 513, 732
DpnII GATC 4 cut(s) 96, 368, 511, 730
EaeI YGGCCR 1 cut(s) 8
Eam1104I CTCTTC 2 cut(s) 80, 294
EarI CTCTTC 2 cut(s) 80, 294
Eco105I TACGTA 1 cut(s) 912
Eco130I CCWWGG 2 cut(s) 135, 561
Eco47I GGWCC 1 cut(s) 528
Eco57I CTGAAG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 2 cut(s) 135, 561
ErhI CCWWGG 2 cut(s) 135, 561
FaeI CATG 7 cut(s) 154, 178, 184, 322, 377, 433, 565
FatI CATG 7 cut(s) 150, 174, 180, 318, 373, 429, 561
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 8, 804
Fsp4HI GCNGC 2 cut(s) 8, 804
FspBI CTAG 4 cut(s) 567, 654, 809, 873
GlaI GCGC 1 cut(s) 819
GluI GCNGC 2 cut(s) 8, 804
GsaI CCCAGC 1 cut(s) 824
HaeIII GGCC 2 cut(s) 10, 694
HapII CCGG 2 cut(s) 598, 617
HhaI GCGC 1 cut(s) 820
Hin1II CATG 7 cut(s) 154, 178, 184, 322, 377, 433, 565
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HinfI GANTC 8 cut(s) 162, 218, 262, 298, 401, 557, 612, 739
HpaII CCGG 2 cut(s) 598, 617
HphI GGTGA 4 cut(s) 268, 276, 410, 550
Hpy166II GTNNAC 5 cut(s) 442, 591, 743, 771, 909
Hpy188I TCNGA 7 cut(s) 305, 361, 493, 670, 718, 735, 856
Hpy188III TCNNGA 3 cut(s) 526, 752, 789
Hpy8I GTNNAC 5 cut(s) 442, 591, 743, 771, 909
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 2 cut(s) 245, 343
HpyCH4IV ACGT 3 cut(s) 833, 905, 911
HpyCH4V TGCA 2 cut(s) 521, 895
HpyF10VI GCNNNNNNNGC 1 cut(s) 809
HpyF3I CTNAG 5 cut(s) 302, 390, 621, 750, 853
HpySE526I ACGT 3 cut(s) 833, 905, 911
Hsp92II CATG 7 cut(s) 154, 178, 184, 322, 377, 433, 565
HspAI GCGC 1 cut(s) 818
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 4 cut(s) 96, 368, 511, 730
LmnI GCTCC 4 cut(s) 197, 356, 478, 652
Lsp1109I GCAGC 1 cut(s) 790
MaeI CTAG 4 cut(s) 567, 654, 809, 873
MaeII ACGT 3 cut(s) 833, 905, 911
MaeIII GTNAC 1 cut(s) 606
MalI GATC 4 cut(s) 98, 370, 513, 732
MboI GATC 4 cut(s) 96, 368, 511, 730
MfeI CAATTG 1 cut(s) 866
MflI RGATCY 1 cut(s) 368
MluCI AATT 4 cut(s) 626, 857, 866, 882
MlyI GAGTC 2 cut(s) 212, 748
MmeI TCCRAC 1 cut(s) 456
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 4 cut(s) 185, 687, 881, 902
MslI CAYNNNNRTG 2 cut(s) 173, 179
MspI CCGG 2 cut(s) 598, 617
MspR9I CCNGG 4 cut(s) 259, 598, 599, 617
MunI CAATTG 1 cut(s) 866
Mva1269I GAATGC 2 cut(s) 521, 635
MvaI CCWGG 1 cut(s) 259
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 809
NciI CCSGG 3 cut(s) 598, 599, 617
NcoI CCATGG 1 cut(s) 561
NdeII GATC 4 cut(s) 96, 368, 511, 730
NlaIII CATG 7 cut(s) 154, 178, 184, 322, 377, 433, 565
NlaIV GGNNCC 3 cut(s) 340, 370, 455
NmeAIII GCCGAG 2 cut(s) 315, 726
PctI GAATGC 2 cut(s) 521, 635
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 6 cut(s) 162, 262, 298, 401, 557, 612
PkrI GCNGC 2 cut(s) 9, 805
PleI GAGTC 2 cut(s) 212, 747
PpsI GAGTC 2 cut(s) 212, 747
Ppu21I YACGTR 1 cut(s) 912
PpuMI RGGWCCY 1 cut(s) 528
Psp1406I AACGTT 1 cut(s) 905
Psp5II RGGWCCY 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 820
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 3 cut(s) 340, 370, 455
PspPI GGNCC 2 cut(s) 528, 692
PspPPI RGGWCCY 1 cut(s) 528
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 5 cut(s) 443, 590, 770, 851, 878
RsaNI GTAC 5 cut(s) 442, 589, 769, 850, 877
RseI CAYNNNNRTG 2 cut(s) 173, 179
SaqAI TTAA 4 cut(s) 185, 687, 881, 902
SatI GCNGC 2 cut(s) 8, 804
Sau3AI GATC 4 cut(s) 96, 368, 511, 730
Sau96I GGNCC 2 cut(s) 528, 692
SchI GAGTC 2 cut(s) 212, 748
ScrFI CCNGG 4 cut(s) 259, 598, 599, 617
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 1 cut(s) 528
SmaI CCCGGG 1 cut(s) 599
SmiMI CAYNNNNRTG 2 cut(s) 173, 179
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
SnaBI TACGTA 1 cut(s) 912
Sse9I AATT 4 cut(s) 626, 857, 866, 882
SsiI CCGC 1 cut(s) 7
SspI AATATT 2 cut(s) 105, 708
SspMI CTAG 4 cut(s) 567, 654, 809, 873
StyD4I CCNGG 4 cut(s) 257, 596, 597, 615
StyI CCWWGG 2 cut(s) 135, 561
TaaI ACNGT 2 cut(s) 245, 343
TaiI ACGT 3 cut(s) 836, 908, 914
TaqI TCGA 2 cut(s) 50, 80
TasI AATT 4 cut(s) 626, 857, 866, 882
TatI WGTACW 3 cut(s) 441, 768, 849
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 6 cut(s) 162, 262, 298, 401, 557, 612
Tru1I TTAA 4 cut(s) 185, 687, 881, 902
Tru9I TTAA 4 cut(s) 185, 687, 881, 902
TscAI CASTG 3 cut(s) 250, 477, 778
TseI GCWGC 1 cut(s) 803
TspDTI ATGAA 2 cut(s) 335, 510
TspGWI ACGGA 1 cut(s) 752
TspMI CCCGGG 1 cut(s) 597
TspRI CASTG 3 cut(s) 250, 477, 778
VpaK11BI GGWCC 1 cut(s) 528
XapI RAATTY 1 cut(s) 857
XmaI CCCGGG 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 4 cut(s) 567, 654, 809, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.