Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008018.1

Orthogroup ID

OG0010892

Physical Location & Seq

Genomic Coordinates Forward (+)

7457 .. 9709

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008018.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgatcacccgattctccaccaccatgaccatgttaagaagctcctctatctcctccccatcacttgactctctcattcctcgccaacccaacagtgtcaatcccaccaggaatctcatctccctcaccaaatcacctcttcccctgactctcaaatactcaatctccatgaacaatcaaaatctccgcaccgtttgtagctccaaatcagacaatggatcccatgacccttcttcttctcagggaggtgaatcattcttcaggggagtgttggcaaacatggaggctgtgtacttgagcaggaaccctacagcaaagtcagtgttggagcttgttgggtccgatgaacagattagctatgatcattttgcattcaggacctttggggtgaatggttatgggattgattccatggctagatttttcttggatttcgggtacactccccgggaggagttacgattcccggctaagaaattgagggcattctggtttgctcctcctagttataccatttctgatggtggtgctggtgttaatgggcctttgccgagaatatttatatctgagcttcttgtagatcagatgagtccacaaactcaggagataatccgtaagtacactgaaaactctggttctggaaataagtatgctgctctagcaagtgcgctgggaactttgacgtgggaaaagccgttgtactcagaatttcagcaattggctagggaaagtgaatatgctgcctggacccttgtcaatgggtatgcagtcaaccatgtcacaatctctgctcaccagctgaaatctaaattgagagatattaaaagcctcaatcaattcatcgaggagaatgggttcaggttgaattctgaaggcggaattctgaaagtgagccccgatggtcttctgctgcaaagttcaactgtcgcagatccagttaatttccaatttagggatggtcaaattgagtcagtcccctgctcctacattgagtttgctcaacgcctggtgctgccccagtacagcaatctaccaagcaacgaggttaaagagcatcacaggcgagatggctttgaggttggtaatgcggacaagatctttgagagcacatcaaaggagcagctgaccaggagggctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1338

Protein Analysis

380

Amino Acids

42.33

Weight (kDa)

7.75

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07040
fragaria_vesca	FvH4_4g31940 FvH4_4g31940 FvH4_4g31940 FvH4_4g31940
malus_domestica	MD16G1078500.v1.1
prunus_persica	Prupe.1G268000_v2.0.a1 Prupe.1G268000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0440591
rosa_laevigata	RLG00000006165
rosa_multiflora	Rmu_co8207494.1_g000001 Rmu_sc0008018.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381420
rosa_rugosa	Rorug04G0326900
rosa_samantha	Rh4AG378800 Rh4BG391400 Rh4CG406100 Rh4DG385300
rosa_wichuraiana	Rw4G032530 Rw4G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	187, 876, 1088
AclWI	GGATC	3 cut(s)	213, 226, 926
AcsI	RAATTY	3 cut(s)	707, 865, 879
AcuI	CTGAAG	2 cut(s)	244, 891
AfaI	GTAC	5 cut(s)	293, 440, 620, 701, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	952
AgsI	TTSAA	2 cut(s)	865, 921
AjiI	CACGTC	1 cut(s)	684
AjnI	CCWGG	4 cut(s)	107, 743, 1005, 1127
AloI	GAACNNNNNNTCC	2 cut(s)	839, 871
AluBI	AGCT	7 cut(s)	42, 201, 331, 357, 571, 799, 1123
AluI	AGCT	7 cut(s)	42, 201, 331, 357, 571, 799, 1123
Alw21I	GWGCWC	1 cut(s)	1109
AlwI	GGATC	3 cut(s)	213, 226, 926
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	6 cut(s)	653, 740, 910, 1012, 1120, 1136
ApoI	RAATTY	3 cut(s)	707, 865, 879
ArsI	GACNNNNNNTTYG	2 cut(s)	1082, 1114
Asp700I	GAANNNNTTC	1 cut(s)	854
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	4 cut(s)	339, 378, 542, 747
AsuC2I	CCSGG	3 cut(s)	448, 449, 467
AsuHPI	GGTGA	5 cut(s)	118, 126, 260, 400, 785
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	3 cut(s)	339, 378, 747
BamHI	GGATCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	896
BbsI	GAAGAC	1 cut(s)	896
Bbv12I	GWGCWC	1 cut(s)	1109
BbvI	GCAGC	6 cut(s)	640, 727, 897, 999, 1123, 1132
BccI	CCATC	5 cut(s)	67, 515, 893, 950, 1061
BceAI	ACGGC	1 cut(s)	679
BciT130I	CCWGG	4 cut(s)	109, 745, 1007, 1129
BclI	TGATCA	2 cut(s)	3, 361
BcnI	CCSGG	3 cut(s)	448, 449, 467
BfaI	CTAG	4 cut(s)	417, 504, 659, 723
BfmI	CTRYAG	1 cut(s)	309
BglII	AGATCT	1 cut(s)	1095
BisI	GCNGC	6 cut(s)	654, 741, 911, 1013, 1121, 1137
BlsI	GCNGC	6 cut(s)	655, 742, 912, 1014, 1122, 1138
Bme1390I	CCNGG	7 cut(s)	109, 448, 449, 467, 745, 1007, 1129
Bme18I	GGWCC	3 cut(s)	339, 378, 747
BmeT110I	CYCGRG	1 cut(s)	447
BmgBI	CACGTC	1 cut(s)	684
BmgT120I	GGNCC	4 cut(s)	339, 378, 542, 747
BmiI	GGNNCC	4 cut(s)	220, 305, 340, 749
BmrFI	CCNGG	7 cut(s)	109, 448, 449, 467, 745, 1007, 1129
BmrI	ACTGGG	1 cut(s)	1012
BmsI	GCATC	1 cut(s)	1063
BmuI	ACTGGG	1 cut(s)	1012
BoxI	GACNNNNGTC	1 cut(s)	752
BpiI	GAAGAC	1 cut(s)	896
BpuEI	CTTGAG	1 cut(s)	316
BpuMI	CCSGG	3 cut(s)	448, 449, 467
BsaJI	CCNNGG	3 cut(s)	411, 446, 447
BsaXI	ACNNNNNCTCC	6 cut(s)	149, 179, 275, 305, 839, 869
Bsc4I	CCNNNNNNNGG	1 cut(s)	952
Bse1I	ACTGG	2 cut(s)	935, 1018
BseBI	CCWGG	4 cut(s)	109, 745, 1007, 1129
BseDI	CCNNGG	3 cut(s)	411, 446, 447
BseGI	GGATG	1 cut(s)	961
BseLI	CCNNNNNNNGG	1 cut(s)	952
BseMII	CTCAG	4 cut(s)	254, 558, 614, 717
BseNI	ACTGG	2 cut(s)	935, 1018
BseRI	GAGGAG	5 cut(s)	34, 43, 467, 489, 860
BseXI	GCAGC	6 cut(s)	640, 727, 897, 999, 1123, 1132
BseYI	CCCAGC	1 cut(s)	670
BshFI	GGCC	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	1109
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	2 cut(s)	448, 467
BslFI	GGGAC	1 cut(s)	959
BslI	CCNNNNNNNGG	1 cut(s)	952
BsmFI	GGGAC	1 cut(s)	959
BsmI	GAATGC	2 cut(s)	371, 485
BsnI	GGCC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	2 cut(s)	896, 1109
Bsp143I	GATC	6 cut(s)	3, 218, 361, 580, 931, 1095
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	3 cut(s)	187, 876, 1088
BspANI	GGCC	1 cut(s)	544
BspCNI	CTCAG	4 cut(s)	253, 559, 613, 716
BspLI	GGNNCC	4 cut(s)	220, 305, 340, 749
BspPI	GGATC	3 cut(s)	213, 226, 926
BsrI	ACTGG	2 cut(s)	935, 1018
BssECI	CCNNGG	3 cut(s)	411, 446, 447
BssMI	GATC	6 cut(s)	3, 218, 361, 580, 931, 1095
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	4 cut(s)	109, 745, 1007, 1129
Bst4CI	ACNGT	3 cut(s)	95, 193, 925
Bst6I	CTCTTC	1 cut(s)	144
BstDEI	CTNAG	5 cut(s)	240, 471, 567, 600, 703
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	961
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	6 cut(s)	6, 221, 364, 583, 934, 1098
BstMBI	GATC	6 cut(s)	3, 218, 361, 580, 931, 1095
BstMWI	GCNNNNNNNGC	2 cut(s)	659, 1060
BstNI	CCWGG	4 cut(s)	109, 745, 1007, 1129
BstPAI	GACNNNNGTC	1 cut(s)	752
BstSCI	CCNGG	7 cut(s)	107, 446, 447, 465, 743, 1005, 1127
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	6 cut(s)	640, 727, 897, 999, 1123, 1132
BstV2I	GAAGAC	1 cut(s)	896
BstX2I	RGATCY	3 cut(s)	218, 931, 1095
BstYI	RGATCY	3 cut(s)	218, 931, 1095
BsuRI	GGCC	1 cut(s)	544
BtgI	CCRYGG	1 cut(s)	411
BtrI	CACGTC	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	961
BtsIMutI	CAGTG	3 cut(s)	100, 327, 621
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	4 cut(s)	339, 378, 542, 747
Cfr9I	CCCGGG	1 cut(s)	447
Csp6I	GTAC	5 cut(s)	292, 439, 619, 700, 1021
CviAII	CATG	8 cut(s)	25, 31, 169, 224, 280, 412, 776, 1140
CviQI	GTAC	5 cut(s)	292, 439, 619, 700, 1021
DdeI	CTNAG	5 cut(s)	240, 471, 567, 600, 703
DpnI	GATC	6 cut(s)	5, 220, 363, 582, 933, 1097
DpnII	GATC	6 cut(s)	3, 218, 361, 580, 931, 1095
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	891
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	896
Eco47I	GGWCC	3 cut(s)	339, 378, 747
Eco57I	CTGAAG	2 cut(s)	244, 891
Eco88I	CYCGRG	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	378
EcoRI	GAATTC	2 cut(s)	865, 879
EcoRII	CCWGG	4 cut(s)	107, 743, 1005, 1127
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	896
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	8 cut(s)	28, 34, 172, 227, 283, 415, 779, 1143
FaqI	GGGAC	1 cut(s)	959
FatI	CATG	8 cut(s)	24, 30, 168, 223, 279, 411, 775, 1139
FbaI	TGATCA	2 cut(s)	3, 361
Fnu4HI	GCNGC	6 cut(s)	654, 741, 911, 1013, 1121, 1137
FokI	GGATG	1 cut(s)	968
FriOI	GRGCYC	1 cut(s)	896
Fsp4HI	GCNGC	6 cut(s)	654, 741, 911, 1013, 1121, 1137
FspBI	CTAG	4 cut(s)	417, 504, 659, 723
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	6 cut(s)	654, 741, 911, 1013, 1121, 1137
GsaI	CCCAGC	1 cut(s)	674
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	2 cut(s)	448, 467
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	8 cut(s)	28, 34, 172, 227, 283, 415, 779, 1143
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	9 cut(s)	12, 68, 112, 148, 251, 407, 462, 589, 968
HpaII	CCGG	2 cut(s)	448, 467
HphI	GGTGA	5 cut(s)	118, 126, 260, 400, 785
Hpy166II	GTNNAC	5 cut(s)	292, 441, 593, 621, 772
Hpy188I	TCNGA	8 cut(s)	211, 343, 520, 568, 585, 706, 871, 885
Hpy188III	TCNNGA	3 cut(s)	376, 602, 639
Hpy8I	GTNNAC	5 cut(s)	292, 441, 593, 621, 772
HpyAV	CCTTC	2 cut(s)	240, 866
HpyCH4III	ACNGT	3 cut(s)	95, 193, 925
HpyCH4IV	ACGT	1 cut(s)	683
HpyCH4V	TGCA	4 cut(s)	371, 767, 913, 1139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	659, 1060
HpyF3I	CTNAG	5 cut(s)	240, 471, 567, 600, 703
HpySE526I	ACGT	1 cut(s)	683
Hsp92II	CATG	8 cut(s)	28, 34, 172, 227, 283, 415, 779, 1143
HspAI	GCGC	1 cut(s)	668
Ksp22I	TGATCA	2 cut(s)	3, 361
Kzo9I	GATC	6 cut(s)	3, 218, 361, 580, 931, 1095
LmnI	GCTCC	6 cut(s)	47, 206, 328, 502, 986, 1117
Lsp1109I	GCAGC	6 cut(s)	640, 727, 897, 999, 1123, 1132
LweI	GCATC	1 cut(s)	1063
MaeI	CTAG	4 cut(s)	417, 504, 659, 723
MaeII	ACGT	1 cut(s)	683
MaeIII	GTNAC	2 cut(s)	456, 778
MalI	GATC	6 cut(s)	5, 220, 363, 582, 933, 1097
MboI	GATC	6 cut(s)	3, 218, 361, 580, 931, 1095
MboII	GAAGA	5 cut(s)	131, 225, 228, 250, 896
MfeI	CAATTG	1 cut(s)	716
MflI	RGATCY	3 cut(s)	218, 931, 1095
MhlI	GDGCHC	2 cut(s)	896, 1109
MlyI	GAGTC	4 cut(s)	62, 142, 598, 977
MmeI	TCCRAC	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	854
MseI	TTAA	5 cut(s)	35, 537, 822, 939, 1047
MslI	CAYNNNNRTG	2 cut(s)	23, 29
MspA1I	CMGCKG	2 cut(s)	799, 1123
MspI	CCGG	2 cut(s)	448, 467
MspR9I	CCNGG	7 cut(s)	109, 448, 449, 467, 745, 1007, 1129
MunI	CAATTG	1 cut(s)	716
Mva1269I	GAATGC	2 cut(s)	371, 485
MvaI	CCWGG	4 cut(s)	109, 745, 1007, 1129
MwoI	GCNNNNNNNGC	2 cut(s)	659, 1060
NciI	CCSGG	3 cut(s)	448, 449, 467
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	6 cut(s)	3, 218, 361, 580, 931, 1095
NlaIII	CATG	8 cut(s)	28, 34, 172, 227, 283, 415, 779, 1143
NlaIV	GGNNCC	4 cut(s)	220, 305, 340, 749
NmeAIII	GCCGAG	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	778
PctI	GAATGC	2 cut(s)	371, 485
PdmI	GAANNNNTTC	1 cut(s)	854
PfeI	GAWTC	5 cut(s)	12, 112, 251, 407, 462
PkrI	GCNGC	6 cut(s)	655, 742, 912, 1014, 1122, 1138
PleI	GAGTC	4 cut(s)	62, 142, 597, 976
PpsI	GAGTC	4 cut(s)	62, 142, 597, 976
PpuMI	RGGWCCY	1 cut(s)	378
PshAI	GACNNNNGTC	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	378
Psp6I	CCWGG	4 cut(s)	107, 743, 1005, 1127
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	4 cut(s)	107, 743, 1005, 1127
PspN4I	GGNNCC	4 cut(s)	220, 305, 340, 749
PspPI	GGNCC	4 cut(s)	339, 378, 542, 747
PspPPI	RGGWCCY	1 cut(s)	378
PsuI	RGATCY	3 cut(s)	218, 931, 1095
PvuII	CAGCTG	2 cut(s)	799, 1123
RsaI	GTAC	5 cut(s)	293, 440, 620, 701, 1022
RsaNI	GTAC	5 cut(s)	292, 439, 619, 700, 1021
RseI	CAYNNNNRTG	2 cut(s)	23, 29
SaqAI	TTAA	5 cut(s)	35, 537, 822, 939, 1047
SatI	GCNGC	6 cut(s)	654, 741, 911, 1013, 1121, 1137
Sau3AI	GATC	6 cut(s)	3, 218, 361, 580, 931, 1095
Sau96I	GGNCC	4 cut(s)	339, 378, 542, 747
SchI	GAGTC	4 cut(s)	62, 142, 598, 977
ScrFI	CCNGG	7 cut(s)	109, 448, 449, 467, 745, 1007, 1129
SduI	GDGCHC	2 cut(s)	896, 1109
SfaNI	GCATC	1 cut(s)	1063
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	3 cut(s)	339, 378, 747
SmaI	CCCGGG	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	23, 29
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
SsiI	CCGC	3 cut(s)	187, 876, 1088
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	4 cut(s)	417, 504, 659, 723
StyD4I	CCNGG	7 cut(s)	107, 446, 447, 465, 743, 1005, 1127
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	3 cut(s)	95, 193, 925
TaiI	ACGT	1 cut(s)	686
TaqI	TCGA	1 cut(s)	843
TatI	WGTACW	4 cut(s)	291, 618, 699, 1020
TfiI	GAWTC	5 cut(s)	12, 112, 251, 407, 462
Tru1I	TTAA	5 cut(s)	35, 537, 822, 939, 1047
Tru9I	TTAA	5 cut(s)	35, 537, 822, 939, 1047
TscAI	CASTG	3 cut(s)	100, 327, 628
TseFI	GTSAC	1 cut(s)	778
TseI	GCWGC	6 cut(s)	653, 740, 910, 1012, 1120, 1136
Tsp45I	GTSAC	1 cut(s)	778
TspDTI	ATGAA	3 cut(s)	185, 360, 829
TspGWI	ACGGA	1 cut(s)	602
TspMI	CCCGGG	1 cut(s)	447
TspRI	CASTG	3 cut(s)	100, 327, 628
VpaK11BI	GGWCC	3 cut(s)	339, 378, 747
XapI	RAATTY	3 cut(s)	707, 865, 879
XcmI	CCANNNNNNNNNTGG	1 cut(s)	953
XmaI	CCCGGG	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	854
XspI	CTAG	4 cut(s)	417, 504, 659, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.