Rh4BG391400

DUF1338

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0010892
Physical Location & Seq
Forward (+)
54412826 .. 54415386
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG391400.1

Sequence Viewer

Length: 1143 bp
ATGATTACCCGATTCTCCACCACCATGACCGTGTTAAGAAGCTCCTCTATCTCCTCCCCATCACTTGACTCTCTCATTCCTCGCCAACCCAACAGTGTCAATCCCACCGGGAATCTCATCTCCCTCACCAAATCACCTCTTCCCCTGAATCTCAAATACTCAATCTCCATGAACAATCAAAATCTCCGCACCGTTTGTAGCTCCAAATCAGACAATGGATCCCATGACCCTTCTTCTTCTCAGGGAGGTGAATCATTCTTCAGGGGAGTGTTGGCAAACATGGAGGCTGTGTACTTGAGCAGGAACCCTACAGCAAAGTCAGTGTTGGAGCTTGTTGGGTCTGATGAACAGATTAGCTATGATCATTTTGCATTTAGGACCTTTGGGGTGAATGGTTACGGGATTGATTCCATGGCTAGATTTTTCTTGGATTTCGGGTACACTCCCCGGGAGGAGTTACGATTCCCGGCTAAGAAATTGAGGGCATTCTGGTTTGCTCCTCCTAGTTATACCATTTCTGATGGTGGTGCTGGTGTTAATGGGCCTTTGCCGAGAATATTTATATCTGAGCTACTTGTAGATCAGATGAGTCCACAAACTCAGGAGATAATCCGTAAGTACACTGAAAACTCTGGTTCTGGAAATAAGTATGCTGCTCTAGCAAGTGCGCTGGGAACTTTGACGTGGGAAAAGCCGTTGTACTCAGAATTTCAGCAATTGGCTAGGGAAAGTGAATATGCTGCCTGGACCCTTGTCAATGGGTATGCAGTCAACCATGTCACAATCTCTGCTCACCAGCTGAAATCTAAATTGAGAGATATTAAAAGCCTCAATCAATTCATTGAGGAGAATGGGTTCAGGTTGAATTCTGAAGGCGGAATTCTGAAAGTGAGCCCCGATGGTCTTCTGCTGCAAAGTTCAACTGTCGCAGATCCAGTTAATTTCCAATTTAGGGATGGTCAAATTGAGTCGGTCCCCTGCTCCTACATTGAGTTTGCTCAACGCCTGGTGCTGCCCCAGTACAGCAATCTACCAAGCAACGAGGTTAAAGAGCATCACAGGCGAGATGGCTTTGAGGTTGGTAACGCGGACAAGATCTTTGAGAGCACATCAAAGGAGCAGCTGACCAGGAGGGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1338

Protein Analysis

380

Amino Acids

42.21

Weight (kDa)

7.03

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HGLS PF07063 106 - 338 8e-43 2-oxoadipate dioxygenase/decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1088
AciI CCGC 3 cut(s) 187, 876, 1088
AclWI GGATC 3 cut(s) 213, 226, 926
AcsI RAATTY 3 cut(s) 707, 865, 879
AcuI CTGAAG 2 cut(s) 244, 891
AfaI GTAC 5 cut(s) 293, 440, 620, 701, 1022
AfiI CCNNNNNNNGG 1 cut(s) 952
AgsI TTSAA 2 cut(s) 865, 921
AjiI CACGTC 1 cut(s) 684
AjnI CCWGG 3 cut(s) 743, 1005, 1127
AloI GAACNNNNNNTCC 2 cut(s) 839, 871
AluBI AGCT 7 cut(s) 42, 201, 331, 357, 571, 799, 1123
AluI AGCT 7 cut(s) 42, 201, 331, 357, 571, 799, 1123
Alw21I GWGCWC 1 cut(s) 1109
AlwI GGATC 3 cut(s) 213, 226, 926
Ama87I CYCGRG 1 cut(s) 447
AoxI GGCC 1 cut(s) 542
ApeKI GCWGC 6 cut(s) 653, 740, 910, 1012, 1120, 1136
ApoI RAATTY 3 cut(s) 707, 865, 879
ArsI GACNNNNNNTTYG 2 cut(s) 1082, 1114
Asp700I GAANNNNTTC 1 cut(s) 854
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 4 cut(s) 378, 542, 747, 973
AsuC2I CCSGG 4 cut(s) 109, 448, 449, 467
AsuHPI GGTGA 5 cut(s) 118, 126, 260, 400, 785
AvaI CYCGRG 1 cut(s) 447
AvaII GGWCC 3 cut(s) 378, 747, 973
BamHI GGATCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 896
BbsI GAAGAC 1 cut(s) 896
Bbv12I GWGCWC 1 cut(s) 1109
BbvI GCAGC 6 cut(s) 640, 727, 897, 999, 1123, 1132
BccI CCATC 5 cut(s) 67, 515, 893, 950, 1061
BceAI ACGGC 1 cut(s) 679
BciT130I CCWGG 3 cut(s) 745, 1007, 1129
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 4 cut(s) 109, 448, 449, 467
BfaI CTAG 4 cut(s) 417, 504, 659, 723
BfmI CTRYAG 1 cut(s) 309
BglII AGATCT 1 cut(s) 1095
BisI GCNGC 6 cut(s) 654, 741, 911, 1013, 1121, 1137
BlsI GCNGC 6 cut(s) 655, 742, 912, 1014, 1122, 1138
Bme1390I CCNGG 7 cut(s) 109, 448, 449, 467, 745, 1007, 1129
Bme18I GGWCC 3 cut(s) 378, 747, 973
BmeT110I CYCGRG 1 cut(s) 447
BmgBI CACGTC 1 cut(s) 684
BmgT120I GGNCC 4 cut(s) 378, 542, 747, 973
BmiI GGNNCC 4 cut(s) 220, 305, 749, 975
BmrFI CCNGG 7 cut(s) 109, 448, 449, 467, 745, 1007, 1129
BmrI ACTGGG 1 cut(s) 1012
BmsI GCATC 1 cut(s) 1063
BmuI ACTGGG 1 cut(s) 1012
BoxI GACNNNNGTC 1 cut(s) 752
BpiI GAAGAC 1 cut(s) 896
BpuEI CTTGAG 1 cut(s) 316
BpuMI CCSGG 4 cut(s) 109, 448, 449, 467
BsaJI CCNNGG 3 cut(s) 411, 446, 447
BsaXI ACNNNNNCTCC 6 cut(s) 149, 179, 275, 305, 839, 869
Bsc4I CCNNNNNNNGG 1 cut(s) 952
Bse1I ACTGG 2 cut(s) 935, 1018
BseBI CCWGG 3 cut(s) 745, 1007, 1129
BseDI CCNNGG 3 cut(s) 411, 446, 447
BseGI GGATG 1 cut(s) 961
BseLI CCNNNNNNNGG 1 cut(s) 952
BseMII CTCAG 4 cut(s) 254, 558, 614, 717
BseNI ACTGG 2 cut(s) 935, 1018
BseRI GAGGAG 5 cut(s) 34, 43, 467, 489, 860
BseXI GCAGC 6 cut(s) 640, 727, 897, 999, 1123, 1132
BseYI CCCAGC 1 cut(s) 670
Bsh1236I CGCG 1 cut(s) 1088
BshFI GGCC 1 cut(s) 544
BsiHKAI GWGCWC 1 cut(s) 1109
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 3 cut(s) 108, 448, 467
BslFI GGGAC 1 cut(s) 959
BslI CCNNNNNNNGG 1 cut(s) 952
BsmFI GGGAC 1 cut(s) 959
BsmI GAATGC 1 cut(s) 485
BsnI GGCC 1 cut(s) 544
BsoBI CYCGRG 1 cut(s) 447
Bsp1286I GDGCHC 2 cut(s) 896, 1109
Bsp143I GATC 5 cut(s) 218, 361, 580, 931, 1095
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 3 cut(s) 187, 876, 1088
BspANI GGCC 1 cut(s) 544
BspCNI CTCAG 4 cut(s) 253, 559, 613, 716
BspFNI CGCG 1 cut(s) 1088
BspLI GGNNCC 4 cut(s) 220, 305, 749, 975
BspPI GGATC 3 cut(s) 213, 226, 926
BsrI ACTGG 2 cut(s) 935, 1018
BssECI CCNNGG 3 cut(s) 411, 446, 447
BssMI GATC 5 cut(s) 218, 361, 580, 931, 1095
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 3 cut(s) 745, 1007, 1129
Bst4CI ACNGT 4 cut(s) 31, 95, 193, 925
Bst6I CTCTTC 1 cut(s) 144
BstDEI CTNAG 5 cut(s) 240, 471, 567, 600, 703
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 961
BstFNI CGCG 1 cut(s) 1088
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 5 cut(s) 221, 364, 583, 934, 1098
BstMBI GATC 5 cut(s) 218, 361, 580, 931, 1095
BstMWI GCNNNNNNNGC 2 cut(s) 659, 1060
BstNI CCWGG 3 cut(s) 745, 1007, 1129
BstPAI GACNNNNGTC 1 cut(s) 752
BstSCI CCNGG 7 cut(s) 107, 446, 447, 465, 743, 1005, 1127
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 1088
BstV1I GCAGC 6 cut(s) 640, 727, 897, 999, 1123, 1132
BstV2I GAAGAC 1 cut(s) 896
BstX2I RGATCY 3 cut(s) 218, 931, 1095
BstYI RGATCY 3 cut(s) 218, 931, 1095
BsuRI GGCC 1 cut(s) 544
BtgI CCRYGG 1 cut(s) 411
BtrI CACGTC 1 cut(s) 684
BtsCI GGATG 1 cut(s) 961
BtsIMutI CAGTG 3 cut(s) 100, 327, 621
CfoI GCGC 1 cut(s) 670
Cfr13I GGNCC 4 cut(s) 378, 542, 747, 973
Cfr9I CCCGGG 1 cut(s) 447
Csp6I GTAC 5 cut(s) 292, 439, 619, 700, 1021
CviAII CATG 7 cut(s) 25, 169, 224, 280, 412, 776, 1140
CviQI GTAC 5 cut(s) 292, 439, 619, 700, 1021
DdeI CTNAG 5 cut(s) 240, 471, 567, 600, 703
DpnI GATC 5 cut(s) 220, 363, 582, 933, 1097
DpnII GATC 5 cut(s) 218, 361, 580, 931, 1095
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 1 cut(s) 891
Eco130I CCWWGG 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 896
Eco47I GGWCC 3 cut(s) 378, 747, 973
Eco57I CTGAAG 2 cut(s) 244, 891
Eco88I CYCGRG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 378
EcoRI GAATTC 2 cut(s) 865, 879
EcoRII CCWGG 3 cut(s) 743, 1005, 1127
EcoT14I CCWWGG 1 cut(s) 411
EcoT38I GRGCYC 1 cut(s) 896
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 7 cut(s) 28, 172, 227, 283, 415, 779, 1143
FaqI GGGAC 1 cut(s) 959
FatI CATG 7 cut(s) 24, 168, 223, 279, 411, 775, 1139
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 6 cut(s) 654, 741, 911, 1013, 1121, 1137
FokI GGATG 1 cut(s) 968
FriOI GRGCYC 1 cut(s) 896
Fsp4HI GCNGC 6 cut(s) 654, 741, 911, 1013, 1121, 1137
FspBI CTAG 4 cut(s) 417, 504, 659, 723
GlaI GCGC 1 cut(s) 669
GluI GCNGC 6 cut(s) 654, 741, 911, 1013, 1121, 1137
GsaI CCCAGC 1 cut(s) 674
HaeIII GGCC 1 cut(s) 544
HapII CCGG 3 cut(s) 108, 448, 467
HhaI GCGC 1 cut(s) 670
Hin1II CATG 7 cut(s) 28, 172, 227, 283, 415, 779, 1143
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 9 cut(s) 12, 68, 112, 148, 251, 407, 462, 589, 968
HpaII CCGG 3 cut(s) 108, 448, 467
HphI GGTGA 5 cut(s) 118, 126, 260, 400, 785
Hpy166II GTNNAC 5 cut(s) 292, 441, 593, 621, 772
Hpy188I TCNGA 8 cut(s) 211, 343, 520, 568, 585, 706, 871, 885
Hpy188III TCNNGA 2 cut(s) 602, 639
Hpy8I GTNNAC 5 cut(s) 292, 441, 593, 621, 772
HpyAV CCTTC 2 cut(s) 240, 866
HpyCH4III ACNGT 4 cut(s) 31, 95, 193, 925
HpyCH4IV ACGT 1 cut(s) 683
HpyCH4V TGCA 4 cut(s) 371, 767, 913, 1139
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 1060
HpyF3I CTNAG 5 cut(s) 240, 471, 567, 600, 703
HpySE526I ACGT 1 cut(s) 683
Hsp92II CATG 7 cut(s) 28, 172, 227, 283, 415, 779, 1143
HspAI GCGC 1 cut(s) 668
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 5 cut(s) 218, 361, 580, 931, 1095
LmnI GCTCC 6 cut(s) 47, 206, 328, 502, 986, 1117
Lsp1109I GCAGC 6 cut(s) 640, 727, 897, 999, 1123, 1132
LweI GCATC 1 cut(s) 1063
MaeI CTAG 4 cut(s) 417, 504, 659, 723
MaeII ACGT 1 cut(s) 683
MaeIII GTNAC 4 cut(s) 395, 456, 778, 1082
MalI GATC 5 cut(s) 220, 363, 582, 933, 1097
MboI GATC 5 cut(s) 218, 361, 580, 931, 1095
MboII GAAGA 5 cut(s) 131, 225, 228, 250, 896
MfeI CAATTG 1 cut(s) 716
MflI RGATCY 3 cut(s) 218, 931, 1095
MhlI GDGCHC 2 cut(s) 896, 1109
MlyI GAGTC 3 cut(s) 62, 598, 977
MmeI TCCRAC 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 854
MseI TTAA 5 cut(s) 35, 537, 822, 939, 1047
MslI CAYNNNNRTG 2 cut(s) 23, 29
MspA1I CMGCKG 2 cut(s) 799, 1123
MspI CCGG 3 cut(s) 108, 448, 467
MspR9I CCNGG 7 cut(s) 109, 448, 449, 467, 745, 1007, 1129
MunI CAATTG 1 cut(s) 716
Mva1269I GAATGC 1 cut(s) 485
MvaI CCWGG 3 cut(s) 745, 1007, 1129
MvnI CGCG 1 cut(s) 1088
MwoI GCNNNNNNNGC 2 cut(s) 659, 1060
NciI CCSGG 4 cut(s) 109, 448, 449, 467
NcoI CCATGG 1 cut(s) 411
NdeII GATC 5 cut(s) 218, 361, 580, 931, 1095
NlaIII CATG 7 cut(s) 28, 172, 227, 283, 415, 779, 1143
NlaIV GGNNCC 4 cut(s) 220, 305, 749, 975
NmeAIII GCCGAG 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 778
PctI GAATGC 1 cut(s) 485
PdmI GAANNNNTTC 1 cut(s) 854
PfeI GAWTC 6 cut(s) 12, 112, 148, 251, 407, 462
PkrI GCNGC 6 cut(s) 655, 742, 912, 1014, 1122, 1138
PleI GAGTC 3 cut(s) 62, 597, 976
PpsI GAGTC 3 cut(s) 62, 597, 976
PpuMI RGGWCCY 1 cut(s) 378
PshAI GACNNNNGTC 1 cut(s) 752
Psp5II RGGWCCY 1 cut(s) 378
Psp6I CCWGG 3 cut(s) 743, 1005, 1127
PspFI CCCAGC 1 cut(s) 670
PspGI CCWGG 3 cut(s) 743, 1005, 1127
PspN4I GGNNCC 4 cut(s) 220, 305, 749, 975
PspPI GGNCC 4 cut(s) 378, 542, 747, 973
PspPPI RGGWCCY 1 cut(s) 378
PsuI RGATCY 3 cut(s) 218, 931, 1095
PvuII CAGCTG 2 cut(s) 799, 1123
RsaI GTAC 5 cut(s) 293, 440, 620, 701, 1022
RsaNI GTAC 5 cut(s) 292, 439, 619, 700, 1021
RseI CAYNNNNRTG 2 cut(s) 23, 29
SaqAI TTAA 5 cut(s) 35, 537, 822, 939, 1047
SatI GCNGC 6 cut(s) 654, 741, 911, 1013, 1121, 1137
Sau3AI GATC 5 cut(s) 218, 361, 580, 931, 1095
Sau96I GGNCC 4 cut(s) 378, 542, 747, 973
SchI GAGTC 3 cut(s) 62, 598, 977
ScrFI CCNGG 7 cut(s) 109, 448, 449, 467, 745, 1007, 1129
SduI GDGCHC 2 cut(s) 896, 1109
SfaNI GCATC 1 cut(s) 1063
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 3 cut(s) 378, 747, 973
SmaI CCCGGG 1 cut(s) 449
SmiMI CAYNNNNRTG 2 cut(s) 23, 29
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
SsiI CCGC 3 cut(s) 187, 876, 1088
SspI AATATT 1 cut(s) 558
SspMI CTAG 4 cut(s) 417, 504, 659, 723
StyD4I CCNGG 7 cut(s) 107, 446, 447, 465, 743, 1005, 1127
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 4 cut(s) 31, 95, 193, 925
TaiI ACGT 1 cut(s) 686
TaqII GACCGA 1 cut(s) 961
TatI WGTACW 4 cut(s) 291, 618, 699, 1020
TfiI GAWTC 6 cut(s) 12, 112, 148, 251, 407, 462
Tru1I TTAA 5 cut(s) 35, 537, 822, 939, 1047
Tru9I TTAA 5 cut(s) 35, 537, 822, 939, 1047
TscAI CASTG 3 cut(s) 100, 327, 628
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 6 cut(s) 653, 740, 910, 1012, 1120, 1136
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 3 cut(s) 185, 360, 829
TspGWI ACGGA 1 cut(s) 602
TspMI CCCGGG 1 cut(s) 447
TspRI CASTG 3 cut(s) 100, 327, 628
VpaK11BI GGWCC 3 cut(s) 378, 747, 973
XapI RAATTY 3 cut(s) 707, 865, 879
XcmI CCANNNNNNNNNTGG 1 cut(s) 953
XmaI CCCGGG 1 cut(s) 447
XmnI GAANNNNTTC 1 cut(s) 854
XspI CTAG 4 cut(s) 417, 504, 659, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.