Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013799

Physical Location & Seq

Genomic Coordinates Reverse (-)

2173952 .. 2175038

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAATCGGCGGATTCCGGACGATCCGATCCGGTAAAAGGAGACGACCCGGGTCCATCTTTCGTCTCTTCACCACCAGCTACACCTAGCAGGTATGAGTCACAGAAGCGACGCGACTGGAACACGTTCTTGCAGTACCTCAAGAACCACAAGCCGCCTCTCGCGTTGTCACGGTGTAGCGGAGCGCATGTGATCGAGTTTCTCAAGTACCTCGACCAGTTCGGTAAGACCAAAGTCCACGTGGCGGCTTGTCCTTACTTCGGCCATCAGCAACCTCCGTCTCCTTGCTCATGCCCTCTCAAGCAAGCTTGGGGATCTCTCGATGCTTTGATCGGACGGTTGAGAGCTGCCTACGAGGAGAACGGTGGACGGCCGGATTCTAACCCGTTCGCCGCACGTGCGGTTCGGATTTACTTGAGGGAAGTCAGAGAGAGTCAGGCAAAGGCTCGTGGGATTCCTTACGAGAAAAAGAAACGGAAACGGCCGCCAACTGTCACCACCGTTAGAGTTGACGTCGCTTCTTCGAGACAAAGTGACGGAGACCCTTGTAACGTCGGTGCTCCATCTGTTGCCGAGGCCGTACCGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

196

Amino Acids

21.53

Weight (kDa)

9.53

Isoelectric Point (pI)

62.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	23 - 144	9.8e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07090 AT5G58500
fragaria_vesca	FvH4_3g39410
malus_domestica	MD03G1061600.v1.1 MD11G1065300.v1.1
prunus_persica	Prupe.6G051600_v2.0.a1
pyrus_communis	pycom11g05530
rosa_chinensis	RchiOBHm_Chr5g0070951
rosa_laevigata	RLG00000036174
rosa_multiflora	Rmu_sc0006203.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010220
rosa_rugosa	Rorug05G0408800
rosa_samantha	Rh5AG464900 Rh5BG483600 Rh5CG508300 Rh5DG495200
rosa_wichuraiana	Rw5G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	516
Acc36I	ACCTGC	1 cut(s)	81
AccII	CGCG	2 cut(s)	114, 164
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	8 cut(s)	11, 155, 180, 245, 393, 401, 485, 584
AclWI	GGATC	3 cut(s)	18, 23, 322
AcoI	YGGCCR	3 cut(s)	262, 371, 482
AcvI	CACGTG	2 cut(s)	241, 398
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	3 cut(s)	137, 209, 582
AfiI	CCNNNNNNNGG	3 cut(s)	38, 244, 260
AflIII	ACRYGT	1 cut(s)	123
AluBI	AGCT	3 cut(s)	80, 308, 347
AluI	AGCT	3 cut(s)	80, 308, 347
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	5 cut(s)	36, 70, 285, 520, 534
AlwI	GGATC	3 cut(s)	18, 23, 322
Ama87I	CYCGRG	1 cut(s)	49
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	4 cut(s)	262, 371, 482, 576
ApeKI	GCWGC	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	2 cut(s)	50, 51
AsuHPI	GGTGA	2 cut(s)	63, 487
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	447
BbrPI	CACGTG	2 cut(s)	241, 398
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	3 cut(s)	64, 273, 571
BceAI	ACGGC	3 cut(s)	386, 497, 563
BcnI	CCSGG	2 cut(s)	50, 51
BcoDI	GTCTC	5 cut(s)	36, 70, 285, 520, 534
BfaI	CTAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	81
BisI	GCNGC	5 cut(s)	155, 246, 348, 393, 485
BlsI	GCNGC	5 cut(s)	156, 247, 349, 394, 486
Bme1390I	CCNGG	2 cut(s)	50, 51
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	50, 51
BmsI	GCATC	1 cut(s)	313
BoxI	GACNNNNGTC	2 cut(s)	51, 233
BpuEI	CTTGAG	4 cut(s)	125, 188, 284, 436
BpuMI	CCSGG	2 cut(s)	50, 51
BsaAI	YACGTR	2 cut(s)	241, 398
BsaHI	GRCGYC	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	49, 573
BsaWI	WCCGGW	2 cut(s)	17, 31
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 244, 260
Bse1I	ACTGG	2 cut(s)	122, 217
BseAI	TCCGGA	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	49, 573
BseLI	CCNNNNNNNGG	3 cut(s)	38, 244, 260
BseNI	ACTGG	2 cut(s)	122, 217
BseRI	GAGGAG	1 cut(s)	371
BseX3I	CGGCCG	2 cut(s)	371, 482
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	2 cut(s)	114, 164
Bsh1285I	CGRYCG	2 cut(s)	374, 485
BshFI	GGCC	4 cut(s)	264, 373, 484, 578
BsiEI	CGRYCG	2 cut(s)	374, 485
BsiHKAI	GWGCWC	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	4 cut(s)	18, 32, 50, 374
BslI	CCNNNNNNNGG	3 cut(s)	38, 244, 260
BsmAI	GTCTC	5 cut(s)	36, 70, 285, 520, 534
BsmBI	CGTCTC	3 cut(s)	36, 70, 285
BsnI	GGCC	4 cut(s)	264, 373, 484, 578
Bso31I	GGTCTC	1 cut(s)	534
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp13I	TCCGGA	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	23, 28, 192, 314, 330
BspACI	CCGC	8 cut(s)	11, 155, 180, 245, 393, 401, 485, 584
BspANI	GGCC	4 cut(s)	264, 373, 484, 578
BspEI	TCCGGA	1 cut(s)	17
BspFNI	CGCG	2 cut(s)	114, 164
BspLI	GGNNCC	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	81
BspPI	GGATC	3 cut(s)	18, 23, 322
BspTNI	GGTCTC	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	122, 217
BssECI	CCNNGG	2 cut(s)	49, 573
BssMI	GATC	5 cut(s)	23, 28, 192, 314, 330
BssNI	GRCGYC	1 cut(s)	513
BssSI	CACGAG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	447
Bst4CI	ACNGT	5 cut(s)	174, 339, 365, 493, 502
Bst6I	CTCTTC	1 cut(s)	73
BstACI	GRCGYC	1 cut(s)	513
BstBAI	YACGTR	2 cut(s)	241, 398
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	588
BstFNI	CGCG	2 cut(s)	114, 164
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	5 cut(s)	26, 31, 195, 317, 333
BstMAI	GTCTC	5 cut(s)	36, 70, 285, 520, 534
BstMBI	GATC	5 cut(s)	23, 28, 192, 314, 330
BstMCI	CGRYCG	2 cut(s)	374, 485
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	191
BstPAI	GACNNNNGTC	2 cut(s)	51, 233
BstSCI	CCNGG	2 cut(s)	48, 49
BstUI	CGCG	2 cut(s)	114, 164
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BstZI	CGGCCG	2 cut(s)	371, 482
BsuRI	GGCC	4 cut(s)	264, 373, 484, 578
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	306
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	53
Cfr9I	CCCGGG	1 cut(s)	49
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	136, 208, 581
CviAII	CATG	2 cut(s)	188, 291
CviQI	GTAC	3 cut(s)	136, 208, 581
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	5 cut(s)	25, 30, 194, 316, 332
DpnII	GATC	5 cut(s)	23, 28, 192, 314, 330
EaeI	YGGCCR	3 cut(s)	262, 371, 482
EagI	CGGCCG	2 cut(s)	371, 482
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	26
EclXI	CGGCCG	2 cut(s)	371, 482
Eco31I	GGTCTC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	53
Eco52I	CGGCCG	2 cut(s)	371, 482
Eco72I	CACGTG	2 cut(s)	241, 398
Eco88I	CYCGRG	1 cut(s)	49
Esp3I	CGTCTC	3 cut(s)	36, 70, 285
FaeI	CATG	2 cut(s)	191, 294
FaiI	YATR	3 cut(s)	96, 189, 292
FatI	CATG	2 cut(s)	187, 290
Fnu4HI	GCNGC	5 cut(s)	155, 246, 348, 393, 485
Fsp4HI	GCNGC	5 cut(s)	155, 246, 348, 393, 485
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	5 cut(s)	155, 246, 348, 393, 485
HaeIII	GGCC	4 cut(s)	264, 373, 484, 578
HapII	CCGG	4 cut(s)	18, 32, 50, 374
HgaI	GACGC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	2 cut(s)	191, 294
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	6 cut(s)	5, 14, 98, 377, 433, 454
HpaII	CCGG	4 cut(s)	18, 32, 50, 374
HphI	GGTGA	2 cut(s)	63, 487
Hpy166II	GTNNAC	3 cut(s)	238, 368, 511
Hpy188I	TCNGA	4 cut(s)	28, 335, 408, 428
Hpy188III	TCNNGA	4 cut(s)	18, 142, 320, 525
Hpy8I	GTNNAC	3 cut(s)	238, 368, 511
Hpy99I	CGWCG	3 cut(s)	114, 518, 557
HpyCH4III	ACNGT	5 cut(s)	174, 339, 365, 493, 502
HpyCH4IV	ACGT	5 cut(s)	125, 240, 397, 513, 552
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	1 cut(s)	588
HpySE526I	ACGT	5 cut(s)	125, 240, 397, 513, 552
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	2 cut(s)	191, 294
HspAI	GCGC	1 cut(s)	185
Kpn2I	TCCGGA	1 cut(s)	17
Kzo9I	GATC	5 cut(s)	23, 28, 192, 314, 330
LmnI	GCTCC	2 cut(s)	182, 565
LpnPI	CCDG	9 cut(s)	31, 45, 63, 76, 90, 103, 230, 387, 422
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	5 cut(s)	125, 240, 397, 513, 552
MaeIII	GTNAC	5 cut(s)	99, 168, 493, 533, 548
MalI	GATC	5 cut(s)	25, 30, 194, 316, 332
MboI	GATC	5 cut(s)	23, 28, 192, 314, 330
MboII	GAAGA	2 cut(s)	60, 513
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	562
MlyI	GAGTC	2 cut(s)	107, 442
MnlI	CCTC	8 cut(s)	149, 168, 221, 285, 306, 349, 411, 568
MroI	TCCGGA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	125
MspI	CCGG	4 cut(s)	18, 32, 50, 374
MspR9I	CCNGG	2 cut(s)	50, 51
MvnI	CGCG	2 cut(s)	114, 164
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	2 cut(s)	50, 51
NdeII	GATC	5 cut(s)	23, 28, 192, 314, 330
NlaIII	CATG	2 cut(s)	191, 294
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	4 cut(s)	99, 168, 493, 533
NspI	RCATGY	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	4 cut(s)	5, 14, 377, 454
PkrI	GCNGC	5 cut(s)	156, 247, 349, 394, 486
PleI	GAGTC	2 cut(s)	106, 441
PmaCI	CACGTG	2 cut(s)	241, 398
PmlI	CACGTG	2 cut(s)	241, 398
PpsI	GAGTC	2 cut(s)	106, 441
Ppu21I	YACGTR	2 cut(s)	241, 398
PshAI	GACNNNNGTC	2 cut(s)	51, 233
PspCI	CACGTG	2 cut(s)	241, 398
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	3 cut(s)	137, 209, 582
RsaNI	GTAC	3 cut(s)	136, 208, 581
SatI	GCNGC	5 cut(s)	155, 246, 348, 393, 485
Sau3AI	GATC	5 cut(s)	23, 28, 192, 314, 330
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	107, 442
ScrFI	CCNGG	2 cut(s)	50, 51
SduI	GDGCHC	1 cut(s)	562
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	1 cut(s)	53
SmaI	CCCGGG	1 cut(s)	51
SmlI	CTYRAG	4 cut(s)	140, 203, 299, 415
SmoI	CTYRAG	4 cut(s)	140, 203, 299, 415
SsiI	CCGC	8 cut(s)	11, 155, 180, 245, 393, 401, 485, 584
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	48, 49
TaaI	ACNGT	5 cut(s)	174, 339, 365, 493, 502
TaiI	ACGT	5 cut(s)	128, 243, 400, 516, 555
TaqI	TCGA	4 cut(s)	195, 213, 321, 524
TauI	GCSGC	4 cut(s)	157, 248, 395, 487
TfiI	GAWTC	4 cut(s)	5, 14, 377, 454
TseFI	GTSAC	4 cut(s)	99, 168, 493, 533
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	4 cut(s)	99, 168, 493, 533
TspGWI	ACGGA	3 cut(s)	267, 490, 552
TspMI	CCCGGG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	53
XceI	RCATGY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmaI	CCCGGG	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.