Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013799

Physical Location & Seq

Genomic Coordinates Forward (+)

33540262 .. 33541785

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGACTCAGCTTCCGGTGGACCTTCCGACCCCAACAGCGTCGGAGAAGAGGCTCCACCAGCAGCAACCGGACCCACGACGACGACGACAGCAGCAGCTTCGGCATCGTCGTCTCCAGCAGCACCGCCGAGCCGTTACGAGTCGCAGAAGCGGCGAGACTGGAACACGTTCCTGCAGTACCTGAGGAACCACAAGCCGCCGTTGACGCTGGCGCGGTGCAGCGGGGCCCACGTGATCGAGTTCCTGAAATACCTCGACCAGTTCGGGAAGACCAAGGTACACAACCAGGGGTGTCCGTACTTCGGTCACCCGAACCCTCCGGCGCCGTGCGCCTGCCCACTCAAGCAGGCCTGGGGTAGCCTCGACGCGCTCATCGGACGGCTGAGGGCCGCCTACGAGGAGAACGGCGGACGGCCGGAGTCGAACCCGTTCGGTGCACGCGCGGTGAGAATCTACTTGAGGGAGGTCAGGGAGGGTCAGGCCAAGGCCAGGGGGATTCCCTACGAGAAAAAGAAACGGAAACGCCCAACCACCGTTACCGTCACCGGGAATGTGTCGGCGGGGCCCAGTATTGCTGCTGCTCAACAAGGCGGCGATGCTGCTGCCTCTGGCGGAGGTGACGGTGGTTCAACTGGTCAAACTACTACTGCTGCTGCTGCTCCTGCGGCTGTTACAACTACTACTGCCGCAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

232

Amino Acids

23.87

Weight (kDa)

9.56

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	36 - 158	9.7e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07090 AT5G58500
fragaria_vesca	FvH4_3g39410
malus_domestica	MD03G1061600.v1.1 MD11G1065300.v1.1
prunus_persica	Prupe.6G051600_v2.0.a1
pyrus_communis	pycom11g05530
rosa_chinensis	RchiOBHm_Chr5g0070951
rosa_laevigata	RLG00000036174
rosa_multiflora	Rmu_sc0006203.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010220
rosa_rugosa	Rorug05G0408800
rosa_samantha	Rh5AG464900 Rh5BG483600 Rh5CG508300 Rh5DG495200
rosa_wichuraiana	Rw5G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AccII	CGCG	4 cut(s)	214, 368, 441, 443
AcoI	YGGCCR	1 cut(s)	413
AcvI	CACGTG	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	3 cut(s)	179, 279, 299
AfiI	CCNNNNNNNGG	3 cut(s)	302, 489, 546
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	630
AjnI	CCWGG	3 cut(s)	285, 350, 488
AluBI	AGCT	2 cut(s)	11, 98
AluI	AGCT	2 cut(s)	11, 98
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	2 cut(s)	117, 150
Alw44I	GTGCAC	1 cut(s)	435
AlwNI	CAGNNNCTG	1 cut(s)	181
AoxI	GGCC	7 cut(s)	225, 348, 387, 413, 480, 486, 563
ApaI	GGGCCC	2 cut(s)	229, 567
ApaLI	GTGCAC	1 cut(s)	435
Asp700I	GAANNNNTTC	2 cut(s)	167, 428
AspLEI	GCGC	5 cut(s)	214, 325, 332, 370, 443
AspS9I	GGNCC	7 cut(s)	20, 71, 225, 226, 387, 563, 564
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	4 cut(s)	299, 457, 535, 629
AvaII	GGWCC	2 cut(s)	20, 71
AxyI	CCTNAGG	1 cut(s)	182
BaeGI	GKGCMC	3 cut(s)	229, 439, 567
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	2 cut(s)	229, 567
BbrPI	CACGTG	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	439
BbvCI	CCTCAGC	1 cut(s)	383
BceAI	ACGGC	6 cut(s)	117, 184, 310, 395, 421, 428
BcgI	CGANNNNNNTGC	4 cut(s)	81, 115, 584, 618
BciT130I	CCWGG	3 cut(s)	287, 352, 490
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	117, 150
BfmI	CTRYAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	326
Bme1390I	CCNGG	4 cut(s)	287, 352, 490, 547
Bme18I	GGWCC	2 cut(s)	20, 71
BmgT120I	GGNCC	7 cut(s)	20, 71, 225, 226, 387, 563, 564
BmiI	GGNNCC	8 cut(s)	54, 73, 188, 226, 227, 324, 564, 565
BmrFI	CCNGG	4 cut(s)	287, 352, 490, 547
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	2 cut(s)	113, 586
BmuI	ACTGGG	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	383
BpuEI	CTTGAG	2 cut(s)	326, 478
BpuMI	CCSGG	1 cut(s)	547
BsaAI	YACGTR	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	323
BsaJI	CCNNGG	5 cut(s)	273, 286, 351, 483, 489
BsaWI	WCCGGW	2 cut(s)	14, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 489, 546
Bse1I	ACTGG	4 cut(s)	164, 259, 567, 637
Bse21I	CCTNAGG	1 cut(s)	182
BseBI	CCWGG	3 cut(s)	287, 352, 490
BseDI	CCNNGG	5 cut(s)	273, 286, 351, 483, 489
BseLI	CCNNNNNNNGG	3 cut(s)	302, 489, 546
BseMII	CTCAG	3 cut(s)	21, 173, 374
BseNI	ACTGG	4 cut(s)	164, 259, 567, 637
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	3 cut(s)	229, 439, 567
BseX3I	CGGCCG	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	238
Bsh1236I	CGCG	4 cut(s)	214, 368, 441, 443
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	7 cut(s)	227, 350, 389, 415, 482, 488, 565
BshNI	GGYRCC	1 cut(s)	322
BsiEI	CGRYCG	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	439
BsiSI	CCGG	5 cut(s)	15, 69, 320, 416, 546
BslI	CCNNNNNNNGG	3 cut(s)	302, 489, 546
BsmAI	GTCTC	2 cut(s)	117, 150
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	7 cut(s)	227, 350, 389, 415, 482, 488, 565
Bsp120I	GGGCCC	2 cut(s)	225, 563
Bsp1286I	GDGCHC	3 cut(s)	229, 439, 567
Bsp143I	GATC	1 cut(s)	234
BspANI	GGCC	7 cut(s)	227, 350, 389, 415, 482, 488, 565
BspCNI	CTCAG	3 cut(s)	20, 174, 375
BspFNI	CGCG	4 cut(s)	214, 368, 441, 443
BspLI	GGNNCC	8 cut(s)	54, 73, 188, 226, 227, 324, 564, 565
BspMAI	CTGCAG	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	322
BsrI	ACTGG	4 cut(s)	164, 259, 567, 637
BssECI	CCNNGG	5 cut(s)	273, 286, 351, 483, 489
BssMI	GATC	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	323
BssT1I	CCWWGG	2 cut(s)	273, 483
Bst2UI	CCWGG	3 cut(s)	287, 352, 490
Bst4CI	ACNGT	3 cut(s)	535, 541, 623
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	4 cut(s)	210, 334, 348, 439
BstDEI	CTNAG	3 cut(s)	7, 182, 383
BstEII	GGTNACC	1 cut(s)	305
BstFNI	CGCG	4 cut(s)	214, 368, 441, 443
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	5 cut(s)	214, 325, 332, 370, 443
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	2 cut(s)	117, 150
BstMBI	GATC	1 cut(s)	234
BstMCI	CGRYCG	1 cut(s)	416
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 101, 151, 205, 329, 656, 662, 665
BstNI	CCWGG	3 cut(s)	287, 352, 490
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	4 cut(s)	285, 350, 488, 545
BstSFI	CTRYAG	1 cut(s)	173
BstSLI	GKGCMC	3 cut(s)	229, 439, 567
BstUI	CGCG	4 cut(s)	214, 368, 441, 443
BstV2I	GAAGAC	1 cut(s)	275
BstZI	CGGCCG	1 cut(s)	413
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	7 cut(s)	227, 350, 389, 415, 482, 488, 565
BtgZI	GCGATG	1 cut(s)	609
Cac8I	GCNNGC	4 cut(s)	210, 334, 348, 439
CaiI	CAGNNNCTG	1 cut(s)	181
CfoI	GCGC	5 cut(s)	214, 325, 332, 370, 443
Cfr13I	GGNCC	7 cut(s)	20, 71, 225, 226, 387, 563, 564
CseI	GACGC	3 cut(s)	28, 214, 374
Csp6I	GTAC	3 cut(s)	178, 278, 298
CviQI	GTAC	3 cut(s)	178, 278, 298
DdeI	CTNAG	3 cut(s)	7, 182, 383
DinI	GGCGCC	1 cut(s)	324
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	413
EagI	CGGCCG	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EciI	GGCGGA	2 cut(s)	423, 627
EclXI	CGGCCG	1 cut(s)	413
Eco130I	CCWWGG	2 cut(s)	273, 483
Eco147I	AGGCCT	1 cut(s)	350
Eco24I	GRGCYC	2 cut(s)	229, 567
Eco47I	GGWCC	2 cut(s)	20, 71
Eco52I	CGGCCG	1 cut(s)	413
Eco72I	CACGTG	1 cut(s)	232
Eco81I	CCTNAGG	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	305
EcoO109I	RGGNCCY	2 cut(s)	225, 563
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	3 cut(s)	285, 350, 488
EcoT14I	CCWWGG	2 cut(s)	273, 483
EcoT38I	GRGCYC	2 cut(s)	229, 567
EgeI	GGCGCC	1 cut(s)	324
EheI	GGCGCC	1 cut(s)	324
ErhI	CCWWGG	2 cut(s)	273, 483
Esp3I	CGTCTC	1 cut(s)	117
FaiI	YATR	1 cut(s)	694
FauI	CCCGC	2 cut(s)	215, 553
FriOI	GRGCYC	2 cut(s)	229, 567
GlaI	GCGC	5 cut(s)	213, 324, 331, 369, 442
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	7 cut(s)	227, 350, 389, 415, 482, 488, 565
HapII	CCGG	5 cut(s)	15, 69, 320, 416, 546
HgaI	GACGC	3 cut(s)	28, 214, 374
HhaI	GCGC	5 cut(s)	214, 325, 332, 370, 443
Hin1I	GRCGYC	1 cut(s)	323
Hin6I	GCGC	5 cut(s)	212, 323, 330, 368, 441
HinP1I	GCGC	5 cut(s)	212, 323, 330, 368, 441
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	5 cut(s)	5, 140, 419, 450, 496
HpaII	CCGG	5 cut(s)	15, 69, 320, 416, 546
HphI	GGTGA	4 cut(s)	299, 457, 535, 629
Hpy166II	GTNNAC	4 cut(s)	20, 204, 280, 437
Hpy188I	TCNGA	3 cut(s)	28, 44, 377
Hpy188III	TCNNGA	2 cut(s)	244, 265
Hpy8I	GTNNAC	4 cut(s)	20, 204, 280, 437
Hpy99I	CGWCG	6 cut(s)	44, 82, 85, 88, 112, 368
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	3 cut(s)	535, 541, 623
HpyCH4IV	ACGT	2 cut(s)	167, 231
HpyCH4V	TGCA	3 cut(s)	175, 219, 437
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 101, 151, 205, 329, 656, 662, 665
HpyF3I	CTNAG	3 cut(s)	7, 182, 383
HpySE526I	ACGT	2 cut(s)	167, 231
Hsp92I	GRCGYC	1 cut(s)	323
HspAI	GCGC	5 cut(s)	212, 323, 330, 368, 441
KasI	GGCGCC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	58, 664
LweI	GCATC	2 cut(s)	113, 586
MaeII	ACGT	2 cut(s)	167, 231
MaeIII	GTNAC	6 cut(s)	134, 305, 535, 541, 617, 670
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	2 cut(s)	59, 280
MhlI	GDGCHC	3 cut(s)	229, 439, 567
Mly113I	GGCGCC	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	149, 428
MmeI	TCCRAC	2 cut(s)	22, 51
MroXI	GAANNNNTTC	2 cut(s)	167, 428
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	5 cut(s)	15, 69, 320, 416, 546
MspR9I	CCNGG	4 cut(s)	287, 352, 490, 547
MvaI	CCWGG	3 cut(s)	287, 352, 490
MvnI	CGCG	4 cut(s)	214, 368, 441, 443
MwoI	GCNNNNNNNGC	8 cut(s)	59, 101, 151, 205, 329, 656, 662, 665
NarI	GGCGCC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	1 cut(s)	234
NlaIV	GGNNCC	8 cut(s)	54, 73, 188, 226, 227, 324, 564, 565
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	3 cut(s)	305, 541, 617
PceI	AGGCCT	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 107
PdmI	GAANNNNTTC	2 cut(s)	167, 428
PfeI	GAWTC	2 cut(s)	450, 496
PleI	GAGTC	2 cut(s)	148, 427
PluTI	GGCGCC	1 cut(s)	326
PmaCI	CACGTG	1 cut(s)	232
PmlI	CACGTG	1 cut(s)	232
PpsI	GAGTC	2 cut(s)	148, 427
Ppu21I	YACGTR	1 cut(s)	232
Psp6I	CCWGG	3 cut(s)	285, 350, 488
PspCI	CACGTG	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	305
PspGI	CCWGG	3 cut(s)	285, 350, 488
PspN4I	GGNNCC	8 cut(s)	54, 73, 188, 226, 227, 324, 564, 565
PspOMI	GGGCCC	2 cut(s)	225, 563
PspPI	GGNCC	7 cut(s)	20, 71, 225, 226, 387, 563, 564
PstI	CTGCAG	1 cut(s)	177
PstNI	CAGNNNCTG	1 cut(s)	181
RsaI	GTAC	3 cut(s)	179, 279, 299
RsaNI	GTAC	3 cut(s)	178, 278, 298
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	7 cut(s)	20, 71, 225, 226, 387, 563, 564
SchI	GAGTC	2 cut(s)	149, 428
ScrFI	CCNGG	4 cut(s)	287, 352, 490, 547
SduI	GDGCHC	3 cut(s)	229, 439, 567
SfaNI	GCATC	2 cut(s)	113, 586
SfcI	CTRYAG	1 cut(s)	173
SfoI	GGCGCC	1 cut(s)	324
SinI	GGWCC	2 cut(s)	20, 71
SmlI	CTYRAG	2 cut(s)	341, 457
SmoI	CTYRAG	2 cut(s)	341, 457
SseBI	AGGCCT	1 cut(s)	350
SspDI	GGCGCC	1 cut(s)	322
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	4 cut(s)	285, 350, 488, 545
StyI	CCWWGG	2 cut(s)	273, 483
TaaI	ACNGT	3 cut(s)	535, 541, 623
TaiI	ACGT	2 cut(s)	170, 234
TaqI	TCGA	4 cut(s)	237, 255, 363, 422
TaqII	GACCGA	1 cut(s)	293
TauI	GCSGC	6 cut(s)	154, 199, 392, 594, 668, 689
TfiI	GAWTC	2 cut(s)	450, 496
TseFI	GTSAC	3 cut(s)	305, 541, 617
Tsp45I	GTSAC	3 cut(s)	305, 541, 617
TspGWI	ACGGA	2 cut(s)	285, 532
VneI	GTGCAC	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	20, 71
XmnI	GAANNNNTTC	2 cut(s)	167, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.