Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013799

Physical Location & Seq

Genomic Coordinates Reverse (-)

12870873 .. 12873131

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGATTCAGCTTCCGGTGGACCATCCGACCCTAATAGCGTCGGAGGCGAGGCTCCACCCGCCGCAACCGGGTCCGCCACAACGACAGCTTCGGCTTCGTCATCTCCAGCTCCGCCGAGCCGTTACGAGTCGCAGAAGCGGCGAGACTGGAACACGTTCCTGCAGTACCTGAAGAACCACAAGCCGCCACTGACGTTGGCGCGGTGCAGCAGGGCCCACGTGATTGAGTTCCTCAAGTACCTCGATCAGTTCGGGAAGACTAAGGTGCACAATTCGGGGTGTCCATATTTCGGTCATCCGAATCCTCCGGCGCCGTGCGCCTGCCCACTCAAGCAGGCGTGGGGTAGCCTTGACGCGCTCATCGGACGGCTGAGGGCGGCCTACGAGGAGAACGGCGGACGGCCCGAGTCGAACCCGTTCGGGGCACGCGCGGTGAGAATCTACTTGAGGGAGGTCAGGGAGGGTCAGGCCAAGGCCAGGGGTATTCCCTACGAGAAAAAGAAGCGGAAACGGCCAAGTACCGTTACGGTGGCCGGGAATGTGTCGGTGGGTTCCAGTAGTGCTGCTCAACAAGGCGGCGATGCTGCCGCTGGCGGAGGTGACGGTGCTCCAACTGGTCAATCTACTACTGCTGCTCCTGCAGCTGTTACAACTACTACTGCCGCAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

223

Amino Acids

23.14

Weight (kDa)

9.72

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	31 - 154	1.1e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07090 AT5G58500
fragaria_vesca	FvH4_3g39410
malus_domestica	MD03G1061600.v1.1 MD11G1065300.v1.1
prunus_persica	Prupe.6G051600_v2.0.a1
pyrus_communis	pycom11g05530
rosa_chinensis	RchiOBHm_Chr5g0070951
rosa_laevigata	RLG00000036174
rosa_multiflora	Rmu_sc0006203.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010220
rosa_rugosa	Rorug05G0408800
rosa_samantha	Rh5AG464900 Rh5BG483600 Rh5CG508300 Rh5DG495200
rosa_wichuraiana	Rw5G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccII	CGCG	4 cut(s)	202, 356, 429, 431
AcoI	YGGCCR	2 cut(s)	512, 531
AcuI	CTGAAG	1 cut(s)	191
AcvI	CACGTG	1 cut(s)	220
AcyI	GRCGYC	1 cut(s)	311
AfaI	GTAC	3 cut(s)	167, 239, 520
AfiI	CCNNNNNNNGG	4 cut(s)	69, 290, 421, 477
AflIII	ACRYGT	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	4 cut(s)	11, 89, 110, 644
AluI	AGCT	4 cut(s)	11, 89, 110, 644
Alw21I	GWGCWC	2 cut(s)	270, 610
Alw26I	GTCTC	1 cut(s)	138
Alw44I	GTGCAC	1 cut(s)	266
AlwNI	CAGNNNCTG	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	7 cut(s)	213, 378, 401, 468, 474, 512, 531
ApaI	GGGCCC	1 cut(s)	217
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	5 cut(s)	207, 563, 584, 632, 641
Asp700I	GAANNNNTTC	2 cut(s)	155, 416
AspLEI	GCGC	5 cut(s)	202, 313, 320, 358, 431
AspS9I	GGNCC	5 cut(s)	20, 72, 213, 214, 402
AsuC2I	CCSGG	2 cut(s)	70, 535
AsuHPI	GGTGA	2 cut(s)	445, 611
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	2 cut(s)	20, 72
BaeGI	GKGCMC	3 cut(s)	217, 270, 427
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	217
BbrPI	CACGTG	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	270, 610
BbvCI	CCTCAGC	1 cut(s)	371
BbvI	GCAGC	5 cut(s)	219, 550, 571, 619, 653
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	6 cut(s)	105, 298, 383, 409, 416, 527
BciT130I	CCWGG	1 cut(s)	478
BcnI	CCSGG	2 cut(s)	70, 535
BcoDI	GTCTC	1 cut(s)	138
BfmI	CTRYAG	2 cut(s)	161, 639
BfoI	RGCGCY	1 cut(s)	314
Bme1390I	CCNGG	3 cut(s)	70, 478, 535
Bme18I	GGWCC	2 cut(s)	20, 72
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	5 cut(s)	20, 72, 213, 214, 402
BmiI	GGNNCC	5 cut(s)	54, 73, 215, 312, 553
BmrFI	CCNGG	3 cut(s)	70, 478, 535
BmsI	GCATC	1 cut(s)	571
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	3 cut(s)	218, 314, 466
BpuMI	CCSGG	2 cut(s)	70, 535
BsaAI	YACGTR	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	471, 477
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 290, 421, 477
Bse1I	ACTGG	3 cut(s)	152, 555, 619
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	2 cut(s)	471, 477
BseGI	GGATG	2 cut(s)	23, 295
BseLI	CCNNNNNNNGG	4 cut(s)	69, 290, 421, 477
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	3 cut(s)	152, 555, 619
BseRI	GAGGAG	1 cut(s)	401
BseSI	GKGCMC	3 cut(s)	217, 270, 427
BseXI	GCAGC	5 cut(s)	219, 550, 571, 619, 653
BsgI	GTGCAG	1 cut(s)	226
Bsh1236I	CGCG	4 cut(s)	202, 356, 429, 431
BshFI	GGCC	7 cut(s)	215, 380, 403, 470, 476, 514, 533
BshNI	GGYRCC	1 cut(s)	310
BsiHKAI	GWGCWC	2 cut(s)	270, 610
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	4 cut(s)	15, 69, 308, 534
BslI	CCNNNNNNNGG	4 cut(s)	69, 290, 421, 477
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	7 cut(s)	215, 380, 403, 470, 476, 514, 533
BsoBI	CYCGRG	1 cut(s)	404
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	4 cut(s)	217, 270, 427, 610
Bsp143I	GATC	1 cut(s)	244
BspANI	GGCC	7 cut(s)	215, 380, 403, 470, 476, 514, 533
BspCNI	CTCAG	1 cut(s)	363
BspFNI	CGCG	4 cut(s)	202, 356, 429, 431
BspLI	GGNNCC	5 cut(s)	54, 73, 215, 312, 553
BspMAI	CTGCAG	2 cut(s)	165, 643
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	3 cut(s)	152, 555, 619
BssECI	CCNNGG	2 cut(s)	471, 477
BssMI	GATC	1 cut(s)	244
BssNI	GRCGYC	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	3 cut(s)	523, 529, 605
BstACI	GRCGYC	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	220
BstC8I	GCNNGC	4 cut(s)	322, 336, 427, 592
BstDEI	CTNAG	2 cut(s)	261, 371
BstF5I	GGATG	2 cut(s)	23, 295
BstFNI	CGCG	4 cut(s)	202, 356, 429, 431
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	5 cut(s)	202, 313, 320, 358, 431
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 59, 139, 317, 511, 638, 641
BstNI	CCWGG	1 cut(s)	478
BstSCI	CCNGG	3 cut(s)	68, 476, 533
BstSFI	CTRYAG	2 cut(s)	161, 639
BstSLI	GKGCMC	3 cut(s)	217, 270, 427
BstUI	CGCG	4 cut(s)	202, 356, 429, 431
BstV1I	GCAGC	5 cut(s)	219, 550, 571, 619, 653
BstV2I	GAAGAC	1 cut(s)	263
BsuRI	GGCC	7 cut(s)	215, 380, 403, 470, 476, 514, 533
BtgZI	GCGATG	1 cut(s)	594
BtsCI	GGATG	2 cut(s)	23, 295
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	4 cut(s)	322, 336, 427, 592
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	5 cut(s)	202, 313, 320, 358, 431
Cfr13I	GGNCC	5 cut(s)	20, 72, 213, 214, 402
CseI	GACGC	2 cut(s)	28, 362
Csp6I	GTAC	3 cut(s)	166, 238, 519
CspCI	CAANNNNNGTGG	2 cut(s)	177, 212
CviQI	GTAC	3 cut(s)	166, 238, 519
DdeI	CTNAG	2 cut(s)	261, 371
DinI	GGCGCC	1 cut(s)	312
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EaeI	YGGCCR	2 cut(s)	512, 531
EciI	GGCGGA	4 cut(s)	64, 102, 411, 609
Eco130I	CCWWGG	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	20, 72
Eco57I	CTGAAG	1 cut(s)	191
Eco72I	CACGTG	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	217
EgeI	GGCGCC	1 cut(s)	312
EheI	GGCGCC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	471
FaiI	YATR	2 cut(s)	286, 670
FauI	CCCGC	1 cut(s)	67
FokI	GGATG	2 cut(s)	10, 282
FriOI	GRGCYC	1 cut(s)	217
GlaI	GCGC	5 cut(s)	201, 312, 319, 357, 430
GsuI	CTGGAG	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	7 cut(s)	215, 380, 403, 470, 476, 514, 533
HapII	CCGG	4 cut(s)	15, 69, 308, 534
HgaI	GACGC	2 cut(s)	28, 362
HhaI	GCGC	5 cut(s)	202, 313, 320, 358, 431
Hin1I	GRCGYC	1 cut(s)	311
Hin6I	GCGC	5 cut(s)	200, 311, 318, 356, 429
HinP1I	GCGC	5 cut(s)	200, 311, 318, 356, 429
HinfI	GANTC	5 cut(s)	5, 128, 301, 407, 438
HpaII	CCGG	4 cut(s)	15, 69, 308, 534
HphI	GGTGA	2 cut(s)	445, 611
Hpy166II	GTNNAC	2 cut(s)	20, 268
Hpy188I	TCNGA	4 cut(s)	28, 44, 300, 365
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	2 cut(s)	20, 268
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	3 cut(s)	523, 529, 605
HpyCH4IV	ACGT	3 cut(s)	155, 194, 219
HpyCH4V	TGCA	4 cut(s)	163, 207, 268, 641
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 59, 139, 317, 511, 638, 641
HpyF3I	CTNAG	2 cut(s)	261, 371
HpySE526I	ACGT	3 cut(s)	155, 194, 219
Hsp92I	GRCGYC	1 cut(s)	311
HspAI	GCGC	5 cut(s)	200, 311, 318, 356, 429
KasI	GGCGCC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	4 cut(s)	58, 115, 613, 640
Lsp1109I	GCAGC	5 cut(s)	219, 550, 571, 619, 653
LweI	GCATC	1 cut(s)	571
MaeII	ACGT	3 cut(s)	155, 194, 219
MaeIII	GTNAC	4 cut(s)	122, 523, 599, 646
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	184, 268
MhlI	GDGCHC	4 cut(s)	217, 270, 427, 610
MluCI	AATT	1 cut(s)	271
Mly113I	GGCGCC	1 cut(s)	311
MlyI	GAGTC	2 cut(s)	137, 416
MmeI	TCCRAC	3 cut(s)	22, 51, 635
MroXI	GAANNNNTTC	2 cut(s)	155, 416
MspA1I	CMGCKG	2 cut(s)	590, 644
MspI	CCGG	4 cut(s)	15, 69, 308, 534
MspR9I	CCNGG	3 cut(s)	70, 478, 535
MvaI	CCWGG	1 cut(s)	478
MvnI	CGCG	4 cut(s)	202, 356, 429, 431
MwoI	GCNNNNNNNGC	7 cut(s)	45, 59, 139, 317, 511, 638, 641
NarI	GGCGCC	1 cut(s)	311
NciI	CCSGG	2 cut(s)	70, 535
NdeII	GATC	1 cut(s)	244
NlaIV	GGNNCC	5 cut(s)	54, 73, 215, 312, 553
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	599
PdmI	GAANNNNTTC	2 cut(s)	155, 416
PfeI	GAWTC	3 cut(s)	5, 301, 438
PleI	GAGTC	2 cut(s)	136, 415
PluTI	GGCGCC	1 cut(s)	314
PmaCI	CACGTG	1 cut(s)	220
PmlI	CACGTG	1 cut(s)	220
PpsI	GAGTC	2 cut(s)	136, 415
Ppu21I	YACGTR	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	476
PspCI	CACGTG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	5 cut(s)	54, 73, 215, 312, 553
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	5 cut(s)	20, 72, 213, 214, 402
PstI	CTGCAG	2 cut(s)	165, 643
PstNI	CAGNNNCTG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	3 cut(s)	167, 239, 520
RsaNI	GTAC	3 cut(s)	166, 238, 519
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	5 cut(s)	20, 72, 213, 214, 402
SchI	GAGTC	2 cut(s)	137, 416
ScrFI	CCNGG	3 cut(s)	70, 478, 535
SduI	GDGCHC	4 cut(s)	217, 270, 427, 610
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	2 cut(s)	161, 639
SfoI	GGCGCC	1 cut(s)	312
SinI	GGWCC	2 cut(s)	20, 72
SmlI	CTYRAG	3 cut(s)	233, 329, 445
SmoI	CTYRAG	3 cut(s)	233, 329, 445
Sse9I	AATT	1 cut(s)	271
SspDI	GGCGCC	1 cut(s)	310
StyD4I	CCNGG	3 cut(s)	68, 476, 533
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	523, 529, 605
TaiI	ACGT	3 cut(s)	158, 197, 222
TaqI	TCGA	2 cut(s)	243, 410
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	1 cut(s)	271
TauI	GCSGC	7 cut(s)	65, 142, 187, 380, 579, 590, 665
TfiI	GAWTC	3 cut(s)	5, 301, 438
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	5 cut(s)	207, 563, 584, 632, 641
Tsp45I	GTSAC	1 cut(s)	599
TspRI	CASTG	1 cut(s)	195
VneI	GTGCAC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	20, 72
XmnI	GAANNNNTTC	2 cut(s)	155, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.