Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0013799

Physical Location & Seq

Genomic Coordinates Reverse (-)

4204944 .. 4205743

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGATTCTGCTTCAGGTGGAGCCGGACTGCCCGACCCGAACGTCAGCAGCGGCGAGGGTCCGTCGTCTGCGTCAAGGTCGGCAGCCCCGGCGGCTACCGCTGAGCCCTCGTCAGCATCTCCGGCCCCGCCAAGTCGCTACGAGTCGCAGAAGCGGCGGGACTGGAATACCTTCCTGCAGTACCTCAAGAACCACAAGCCTCCGCTCACGCTGGCCCGCTGCAGTGGGGCCCACGTCATCGAGTTTCTCAAGTACCTCGACCAGTTCGGGAAGACCAAAGTCCACGCCACCGGCTGCCCCTACTTTGGACACCCCAACCCTCCCGCCCCGTGCGCCTGCCCGCTCAAGCAGGCGTGGGGCAGCCTAGACGCGCTCATCGGACGGTTGAGGGCCGCGTACGAGGAGAACGGGGGACGGCCCGAGTCAAATCCCTTCGGTGCTCGAGCGGTGCGGATTTATTTGAGGGAGGTGAGGGAGGGACAGGCTAAGGCCAGAGGAATTCCCTACGAGAAAAAGAAACGGAAACGGTCGACCGTCACTGCCACTGCGGTTGTAGGGAATGTGTCGGTGGCGTCCACTCAAGGCGTCGGTGGTGATGGTGATGGCGGTGGCGGTGTTGATGGTGGCGGTTCAAGTAACACCGCTGCTGCTGCTGCTACTAGTACTGCAGCGATTCTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

228

Amino Acids

23.39

Weight (kDa)

9.54

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07090 AT5G58500
fragaria_vesca	FvH4_3g39410
malus_domestica	MD03G1061600.v1.1 MD11G1065300.v1.1
prunus_persica	Prupe.6G051600_v2.0.a1
pyrus_communis	pycom11g05530
rosa_chinensis	RchiOBHm_Chr5g0070951
rosa_laevigata	RLG00000036174
rosa_multiflora	Rmu_sc0006203.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010220
rosa_rugosa	Rorug05G0408800
rosa_samantha	Rh5AG464900 Rh5BG483600 Rh5CG508300 Rh5DG495200
rosa_wichuraiana	Rw5G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	682
AasI	GACNNNNNNGTC	1 cut(s)	41
AccBSI	CCGCTC	3 cut(s)	205, 343, 446
AccI	GTMKAC	1 cut(s)	530
AccII	CGCG	2 cut(s)	371, 395
AcsI	RAATTY	1 cut(s)	498
AcyI	GRCGYC	2 cut(s)	572, 585
AfaI	GTAC	4 cut(s)	182, 254, 398, 664
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	633
AhlI	ACTAGT	1 cut(s)	659
AjiI	CACGTC	1 cut(s)	235
Alw21I	GWGCWC	1 cut(s)	442
Ama87I	CYCGRG	2 cut(s)	419, 441
AoxI	GGCC	6 cut(s)	123, 213, 228, 390, 416, 489
ApaI	GGGCCC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	335, 373
AspS9I	GGNCC	7 cut(s)	59, 124, 214, 228, 229, 390, 417
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	481, 605, 611
AvaI	CYCGRG	2 cut(s)	419, 441
AvaII	GGWCC	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	108, 232
BbsI	GAAGAC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	442
BccI	CCATC	3 cut(s)	590, 596, 614
BceAI	ACGGC	1 cut(s)	431
BcnI	CCSGG	1 cut(s)	89
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	2 cut(s)	365, 660
BfmI	CTRYAG	3 cut(s)	176, 220, 666
BglI	GCCNNNNNGGC	1 cut(s)	92
BlpI	GCTNAGC	1 cut(s)	102
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	59
BmeT110I	CYCGRG	2 cut(s)	419, 441
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	7 cut(s)	59, 124, 214, 228, 229, 390, 417
BmiI	GGNNCC	5 cut(s)	22, 60, 126, 229, 230
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	125
BoxI	GACNNNNGTC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	4 cut(s)	170, 233, 329, 564
BpuMI	CCSGG	1 cut(s)	89
BsaHI	GRCGYC	2 cut(s)	572, 585
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	167, 262
BseDI	CCNNGG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	167, 262
BseRI	GAGGAG	1 cut(s)	416
BseSI	GKGCMC	1 cut(s)	232
Bsh1236I	CGCG	2 cut(s)	371, 395
Bsh1285I	CGRYCG	2 cut(s)	530, 534
BshFI	GGCC	6 cut(s)	125, 215, 230, 392, 418, 491
BsiEI	CGRYCG	2 cut(s)	530, 534
BsiHKAI	GWGCWC	1 cut(s)	442
BsiHKCI	CYCGRG	2 cut(s)	419, 441
BsiSI	CCGG	4 cut(s)	24, 89, 122, 291
BsiWI	CGTACG	1 cut(s)	396
BslFI	GGGAC	3 cut(s)	173, 426, 492
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmFI	GGGAC	3 cut(s)	173, 426, 492
BsnI	GGCC	6 cut(s)	125, 215, 230, 392, 418, 491
BsoBI	CYCGRG	2 cut(s)	419, 441
Bsp120I	GGGCCC	1 cut(s)	228
Bsp1286I	GDGCHC	3 cut(s)	108, 232, 442
Bsp1720I	GCTNAGC	1 cut(s)	102
BspANI	GGCC	6 cut(s)	125, 215, 230, 392, 418, 491
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	2 cut(s)	371, 395
BspLI	GGNNCC	5 cut(s)	22, 60, 126, 229, 230
BspMAI	CTGCAG	3 cut(s)	180, 224, 670
BsrBI	CCGCTC	3 cut(s)	205, 343, 446
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	167, 262
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	87
BssNI	GRCGYC	2 cut(s)	572, 585
Bst4CI	ACNGT	3 cut(s)	384, 528, 535
BstACI	GRCGYC	2 cut(s)	572, 585
BstC8I	GCNNGC	5 cut(s)	213, 217, 337, 341, 351
BstDEI	CTNAG	2 cut(s)	102, 486
BstFNI	CGCG	2 cut(s)	371, 395
BstHHI	GCGC	2 cut(s)	335, 373
BstMCI	CGRYCG	2 cut(s)	530, 534
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 92, 98, 122, 154, 332, 650, 653
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	3 cut(s)	176, 220, 666
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	2 cut(s)	371, 395
BstV2I	GAAGAC	1 cut(s)	278
BsuRI	GGCC	6 cut(s)	125, 215, 230, 392, 418, 491
BtrI	CACGTC	1 cut(s)	235
BtsI	GCAGTG	3 cut(s)	229, 537, 543
BtsIMutI	CAGTG	3 cut(s)	229, 537, 543
Cac8I	GCNNGC	5 cut(s)	213, 217, 337, 341, 351
CfoI	GCGC	2 cut(s)	335, 373
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	7 cut(s)	59, 124, 214, 228, 229, 390, 417
CseI	GACGC	4 cut(s)	60, 377, 561, 574
Csp6I	GTAC	4 cut(s)	181, 253, 397, 663
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviQI	GTAC	4 cut(s)	181, 253, 397, 663
DdeI	CTNAG	2 cut(s)	102, 486
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eco24I	GRGCYC	2 cut(s)	108, 232
Eco47I	GGWCC	1 cut(s)	59
Eco88I	CYCGRG	2 cut(s)	419, 441
EcoO109I	RGGNCCY	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	498
EcoT38I	GRGCYC	2 cut(s)	108, 232
FaiI	YATR	1 cut(s)	682
FaqI	GGGAC	3 cut(s)	173, 426, 492
FauI	CCCGC	5 cut(s)	135, 150, 224, 331, 348
FblI	GTMKAC	1 cut(s)	530
FriOI	GRGCYC	2 cut(s)	108, 232
FspBI	CTAG	2 cut(s)	365, 660
GlaI	GCGC	2 cut(s)	334, 372
HaeIII	GGCC	6 cut(s)	125, 215, 230, 392, 418, 491
HapII	CCGG	4 cut(s)	24, 89, 122, 291
HgaI	GACGC	4 cut(s)	60, 377, 561, 574
HhaI	GCGC	2 cut(s)	335, 373
Hin1I	GRCGYC	2 cut(s)	572, 585
Hin6I	GCGC	2 cut(s)	333, 371
HinP1I	GCGC	2 cut(s)	333, 371
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	4 cut(s)	5, 143, 422, 673
HpaII	CCGG	4 cut(s)	24, 89, 122, 291
HphI	GGTGA	3 cut(s)	481, 605, 611
Hpy166II	GTNNAC	3 cut(s)	283, 531, 576
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	2 cut(s)	187, 268
Hpy8I	GTNNAC	3 cut(s)	283, 531, 576
Hpy99I	CGWCG	2 cut(s)	67, 590
HpyAV	CCTTC	2 cut(s)	181, 442
HpyCH4III	ACNGT	3 cut(s)	384, 528, 535
HpyCH4IV	ACGT	2 cut(s)	42, 234
HpyCH4V	TGCA	3 cut(s)	178, 222, 668
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 92, 98, 122, 154, 332, 650, 653
HpyF3I	CTNAG	2 cut(s)	102, 486
HpySE526I	ACGT	2 cut(s)	42, 234
Hsp92I	GRCGYC	2 cut(s)	572, 585
HspAI	GCGC	2 cut(s)	333, 371
LmnI	GCTCC	1 cut(s)	20
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	2 cut(s)	365, 660
MaeII	ACGT	2 cut(s)	42, 234
MaeIII	GTNAC	2 cut(s)	535, 635
MbiI	CCGCTC	3 cut(s)	205, 343, 446
MboII	GAAGA	1 cut(s)	283
MhlI	GDGCHC	3 cut(s)	108, 232, 442
MluCI	AATT	1 cut(s)	498
MlyI	GAGTC	2 cut(s)	152, 431
MroXI	GAANNNNTTC	1 cut(s)	170
MspA1I	CMGCKG	4 cut(s)	51, 101, 219, 644
MspI	CCGG	4 cut(s)	24, 89, 122, 291
MspR9I	CCNGG	1 cut(s)	89
MvnI	CGCG	2 cut(s)	371, 395
MwoI	GCNNNNNNNGC	8 cut(s)	89, 92, 98, 122, 154, 332, 650, 653
NciI	CCSGG	1 cut(s)	89
NlaIV	GGNNCC	5 cut(s)	22, 60, 126, 229, 230
NmuCI	GTSAC	1 cut(s)	535
PaeR7I	CTCGAG	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	5, 673
Pfl23II	CGTACG	1 cut(s)	396
PleI	GAGTC	2 cut(s)	151, 430
PpsI	GAGTC	2 cut(s)	151, 430
PshAI	GACNNNNGTC	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	682
PspLI	CGTACG	1 cut(s)	396
PspN4I	GGNNCC	5 cut(s)	22, 60, 126, 229, 230
PspOMI	GGGCCC	1 cut(s)	228
PspPI	GGNCC	7 cut(s)	59, 124, 214, 228, 229, 390, 417
PspXI	VCTCGAGB	1 cut(s)	441
PstI	CTGCAG	3 cut(s)	180, 224, 670
RsaI	GTAC	4 cut(s)	182, 254, 398, 664
RsaNI	GTAC	4 cut(s)	181, 253, 397, 663
SalI	GTCGAC	1 cut(s)	529
Sau96I	GGNCC	7 cut(s)	59, 124, 214, 228, 229, 390, 417
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	2 cut(s)	152, 431
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	3 cut(s)	108, 232, 442
SetI	ASST	8 cut(s)	19, 45, 80, 173, 186, 237, 258, 471
SfaNI	GCATC	1 cut(s)	125
SfcI	CTRYAG	3 cut(s)	176, 220, 666
Sfr274I	CTCGAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	441
SmlI	CTYRAG	5 cut(s)	185, 248, 344, 441, 579
SmoI	CTYRAG	5 cut(s)	185, 248, 344, 441, 579
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	1 cut(s)	498
SspMI	CTAG	2 cut(s)	365, 660
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	384, 528, 535
TaiI	ACGT	2 cut(s)	45, 237
TaqI	TCGA	4 cut(s)	240, 258, 442, 530
TasI	AATT	1 cut(s)	498
TatI	WGTACW	1 cut(s)	662
TauI	GCSGC	4 cut(s)	54, 95, 157, 395
TfiI	GAWTC	2 cut(s)	5, 673
TscAI	CASTG	3 cut(s)	229, 544, 550
TseFI	GTSAC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	535
TspGWI	ACGGA	2 cut(s)	51, 535
TspRI	CASTG	3 cut(s)	229, 544, 550
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	498
XhoI	CTCGAG	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	2 cut(s)	365, 660
ZrmI	AGTACT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.