Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013799

Physical Location & Seq

Genomic Coordinates Forward (+)

70738788 .. 70741639

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG508300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATTCAGCTTCCGGTGGACCATCCGACCCTCATAGCGTCGGAGGCGAGGCTCCACCCGCCGCAACCGGGTCCGCCACAACGACAGCTTCGGCTTCGGCTTCGGCTTCGTCATCTCCAGCTCCGCCGAGCCGTTACGAGTCGCAGAAGCGGCGAGACTGGAACACGTTCCTGCAGTACCTGAAGAACCACAAGCCGCCACTGACGTTGGCGCGGTGCAGCGGGGCCCACGTGATCGAGTTCCTCAAGTACCTCGATCAGTTCGGGAAGACTAAGGTGCACAATTCGGGGTGTCCATATTTCGGTCATCCGAATCCTCCGGCGCCGTGCGCCTGCCCACTGAAGCAGGCGTGGGGTAGCCTCGACGCGCTCATCGGACGGCTGAGGGCGGCCTACGAGGAGAACGGCGGACGGCCCGAGTCGAACCCGTTCGGGGCACGCGCGGTGAGAATCTACTTGAGGGAGGTCAGGGAGGGTCAGGCCAAGGCCAGGGGCATTCCCTACGAGAAAAAGAAGCGGAAACGGCCAAGTACCGTTACGGTGACCGGGAATGTGTCGGTGGGTTCTAGTAGTGCTGCTCAACAAGTCGGCGAAGCTGCCGCTGGCGGAGGTGACGGTGCTCCAACTGGTCAATCTACTACTGCTGCTGCTCCTGCAGCTGTTACAACTACTACTGCCGCAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

228

Amino Acids

23.53

Weight (kDa)

9.63

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	35 - 158	5.2e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07090 AT5G58500
fragaria_vesca	FvH4_3g39410
malus_domestica	MD03G1061600.v1.1 MD11G1065300.v1.1
prunus_persica	Prupe.6G051600_v2.0.a1
pyrus_communis	pycom11g05530
rosa_chinensis	RchiOBHm_Chr5g0070951
rosa_laevigata	RLG00000036174
rosa_multiflora	Rmu_sc0006203.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010220
rosa_rugosa	Rorug05G0408800
rosa_samantha	Rh5AG464900 Rh5BG483600 Rh5CG508300 Rh5DG495200
rosa_wichuraiana	Rw5G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AccII	CGCG	4 cut(s)	214, 368, 441, 443
AcoI	YGGCCR	1 cut(s)	524
AcuI	CTGAAG	2 cut(s)	203, 362
AcvI	CACGTG	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	3 cut(s)	179, 251, 532
AfiI	CCNNNNNNNGG	4 cut(s)	69, 302, 433, 489
AflIII	ACRYGT	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	488
AluBI	AGCT	5 cut(s)	11, 89, 122, 596, 659
AluI	AGCT	5 cut(s)	11, 89, 122, 596, 659
Alw21I	GWGCWC	2 cut(s)	282, 622
Alw26I	GTCTC	1 cut(s)	150
Alw44I	GTGCAC	1 cut(s)	278
AlwNI	CAGNNNCTG	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	6 cut(s)	225, 390, 413, 480, 486, 524
ApaI	GGGCCC	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	278
ApeKI	GCWGC	6 cut(s)	219, 575, 596, 644, 647, 656
Asp700I	GAANNNNTTC	2 cut(s)	167, 428
AspLEI	GCGC	5 cut(s)	214, 325, 332, 370, 443
AspS9I	GGNCC	5 cut(s)	20, 72, 225, 226, 414
AsuC2I	CCSGG	2 cut(s)	70, 547
AsuHPI	GGTGA	3 cut(s)	457, 553, 623
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	2 cut(s)	20, 72
BaeGI	GKGCMC	3 cut(s)	229, 282, 439
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	282, 622
BbvCI	CCTCAGC	1 cut(s)	383
BbvI	GCAGC	6 cut(s)	231, 562, 583, 631, 634, 668
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	6 cut(s)	117, 310, 395, 421, 428, 539
BciT130I	CCWGG	1 cut(s)	490
BcnI	CCSGG	2 cut(s)	70, 547
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	2 cut(s)	173, 654
BfoI	RGCGCY	1 cut(s)	326
Bme1390I	CCNGG	3 cut(s)	70, 490, 547
Bme18I	GGWCC	2 cut(s)	20, 72
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	5 cut(s)	20, 72, 225, 226, 414
BmiI	GGNNCC	5 cut(s)	54, 73, 226, 227, 324
BmrFI	CCNGG	3 cut(s)	70, 490, 547
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	383
BpuEI	CTTGAG	2 cut(s)	230, 478
BpuMI	CCSGG	2 cut(s)	70, 547
BsaAI	YACGTR	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	483, 489
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 302, 433, 489
Bse1I	ACTGG	2 cut(s)	164, 631
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	2 cut(s)	483, 489
BseGI	GGATG	2 cut(s)	23, 307
BseLI	CCNNNNNNNGG	4 cut(s)	69, 302, 433, 489
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	2 cut(s)	164, 631
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	3 cut(s)	229, 282, 439
BseXI	GCAGC	6 cut(s)	231, 562, 583, 631, 634, 668
BsgI	GTGCAG	1 cut(s)	238
Bsh1236I	CGCG	4 cut(s)	214, 368, 441, 443
BshFI	GGCC	6 cut(s)	227, 392, 415, 482, 488, 526
BshNI	GGYRCC	1 cut(s)	322
BsiHKAI	GWGCWC	2 cut(s)	282, 622
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	4 cut(s)	15, 69, 320, 546
BslI	CCNNNNNNNGG	4 cut(s)	69, 302, 433, 489
BsmAI	GTCTC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	6 cut(s)	227, 392, 415, 482, 488, 526
BsoBI	CYCGRG	1 cut(s)	416
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	4 cut(s)	229, 282, 439, 622
Bsp143I	GATC	2 cut(s)	234, 256
BspANI	GGCC	6 cut(s)	227, 392, 415, 482, 488, 526
BspCNI	CTCAG	1 cut(s)	375
BspFNI	CGCG	4 cut(s)	214, 368, 441, 443
BspLI	GGNNCC	5 cut(s)	54, 73, 226, 227, 324
BspMAI	CTGCAG	2 cut(s)	177, 658
BspT107I	GGYRCC	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	164, 631
BssECI	CCNNGG	2 cut(s)	483, 489
BssMI	GATC	2 cut(s)	234, 256
BssNI	GRCGYC	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	3 cut(s)	535, 541, 617
BstACI	GRCGYC	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	4 cut(s)	334, 348, 439, 604
BstDEI	CTNAG	2 cut(s)	273, 383
BstEII	GGTNACC	1 cut(s)	541
BstF5I	GGATG	2 cut(s)	23, 307
BstFNI	CGCG	4 cut(s)	214, 368, 441, 443
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	5 cut(s)	214, 325, 332, 370, 443
BstKTI	GATC	2 cut(s)	237, 259
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	234, 256
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 59, 151, 329, 523, 653, 656
BstNI	CCWGG	1 cut(s)	490
BstPI	GGTNACC	1 cut(s)	541
BstSCI	CCNGG	3 cut(s)	68, 488, 545
BstSFI	CTRYAG	2 cut(s)	173, 654
BstSLI	GKGCMC	3 cut(s)	229, 282, 439
BstUI	CGCG	4 cut(s)	214, 368, 441, 443
BstV1I	GCAGC	6 cut(s)	231, 562, 583, 631, 634, 668
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	6 cut(s)	227, 392, 415, 482, 488, 526
BtsCI	GGATG	2 cut(s)	23, 307
BtsIMutI	CAGTG	2 cut(s)	200, 338
Cac8I	GCNNGC	4 cut(s)	334, 348, 439, 604
CaiI	CAGNNNCTG	1 cut(s)	181
CfoI	GCGC	5 cut(s)	214, 325, 332, 370, 443
Cfr13I	GGNCC	5 cut(s)	20, 72, 225, 226, 414
CseI	GACGC	2 cut(s)	28, 374
Csp6I	GTAC	3 cut(s)	178, 250, 531
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviQI	GTAC	3 cut(s)	178, 250, 531
DdeI	CTNAG	2 cut(s)	273, 383
DinI	GGCGCC	1 cut(s)	324
DpnI	GATC	2 cut(s)	236, 258
DpnII	GATC	2 cut(s)	234, 256
EaeI	YGGCCR	1 cut(s)	524
EciI	GGCGGA	4 cut(s)	64, 114, 423, 621
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	20, 72
Eco57I	CTGAAG	2 cut(s)	203, 362
Eco72I	CACGTG	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	416
Eco91I	GGTNACC	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	225
EcoO65I	GGTNACC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	229
EgeI	GGCGCC	1 cut(s)	324
EheI	GGCGCC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	483
FaiI	YATR	3 cut(s)	36, 298, 685
FauI	CCCGC	2 cut(s)	67, 215
FokI	GGATG	2 cut(s)	10, 294
FriOI	GRGCYC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	5 cut(s)	213, 324, 331, 369, 442
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	6 cut(s)	227, 392, 415, 482, 488, 526
HapII	CCGG	4 cut(s)	15, 69, 320, 546
HgaI	GACGC	2 cut(s)	28, 374
HhaI	GCGC	5 cut(s)	214, 325, 332, 370, 443
Hin1I	GRCGYC	1 cut(s)	323
Hin6I	GCGC	5 cut(s)	212, 323, 330, 368, 441
HinP1I	GCGC	5 cut(s)	212, 323, 330, 368, 441
HinfI	GANTC	5 cut(s)	5, 140, 313, 419, 450
HpaII	CCGG	4 cut(s)	15, 69, 320, 546
HphI	GGTGA	3 cut(s)	457, 553, 623
Hpy166II	GTNNAC	2 cut(s)	20, 280
Hpy188I	TCNGA	4 cut(s)	28, 44, 312, 377
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	2 cut(s)	20, 280
Hpy99I	CGWCG	2 cut(s)	44, 368
HpyCH4III	ACNGT	3 cut(s)	535, 541, 617
HpyCH4IV	ACGT	3 cut(s)	167, 206, 231
HpyCH4V	TGCA	4 cut(s)	175, 219, 280, 656
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 59, 151, 329, 523, 653, 656
HpyF3I	CTNAG	2 cut(s)	273, 383
HpySE526I	ACGT	3 cut(s)	167, 206, 231
Hsp92I	GRCGYC	1 cut(s)	323
HspAI	GCGC	5 cut(s)	212, 323, 330, 368, 441
KasI	GGCGCC	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	234, 256
LmnI	GCTCC	4 cut(s)	58, 127, 625, 655
Lsp1109I	GCAGC	6 cut(s)	231, 562, 583, 631, 634, 668
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	3 cut(s)	167, 206, 231
MaeIII	GTNAC	5 cut(s)	134, 535, 541, 611, 661
MalI	GATC	2 cut(s)	236, 258
MboI	GATC	2 cut(s)	234, 256
MboII	GAAGA	2 cut(s)	196, 280
MhlI	GDGCHC	4 cut(s)	229, 282, 439, 622
MluCI	AATT	1 cut(s)	283
Mly113I	GGCGCC	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	149, 428
MmeI	TCCRAC	3 cut(s)	22, 51, 647
MroXI	GAANNNNTTC	2 cut(s)	167, 428
MspA1I	CMGCKG	3 cut(s)	222, 602, 659
MspI	CCGG	4 cut(s)	15, 69, 320, 546
MspR9I	CCNGG	3 cut(s)	70, 490, 547
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	490
MvnI	CGCG	4 cut(s)	214, 368, 441, 443
MwoI	GCNNNNNNNGC	7 cut(s)	45, 59, 151, 329, 523, 653, 656
NarI	GGCGCC	1 cut(s)	323
NciI	CCSGG	2 cut(s)	70, 547
NdeII	GATC	2 cut(s)	234, 256
NlaIV	GGNNCC	5 cut(s)	54, 73, 226, 227, 324
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	541, 611
PctI	GAATGC	1 cut(s)	495
PdmI	GAANNNNTTC	2 cut(s)	167, 428
PfeI	GAWTC	3 cut(s)	5, 313, 450
PleI	GAGTC	2 cut(s)	148, 427
PluTI	GGCGCC	1 cut(s)	326
PmaCI	CACGTG	1 cut(s)	232
PmlI	CACGTG	1 cut(s)	232
PpsI	GAGTC	2 cut(s)	148, 427
Ppu21I	YACGTR	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	488
PspCI	CACGTG	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	5 cut(s)	54, 73, 226, 227, 324
PspOMI	GGGCCC	1 cut(s)	225
PspPI	GGNCC	5 cut(s)	20, 72, 225, 226, 414
PstI	CTGCAG	2 cut(s)	177, 658
PstNI	CAGNNNCTG	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	3 cut(s)	179, 251, 532
RsaNI	GTAC	3 cut(s)	178, 250, 531
Sau3AI	GATC	2 cut(s)	234, 256
Sau96I	GGNCC	5 cut(s)	20, 72, 225, 226, 414
SchI	GAGTC	2 cut(s)	149, 428
ScrFI	CCNGG	3 cut(s)	70, 490, 547
SduI	GDGCHC	4 cut(s)	229, 282, 439, 622
SfcI	CTRYAG	2 cut(s)	173, 654
SfoI	GGCGCC	1 cut(s)	324
SinI	GGWCC	2 cut(s)	20, 72
SmlI	CTYRAG	2 cut(s)	245, 457
SmoI	CTYRAG	2 cut(s)	245, 457
Sse9I	AATT	1 cut(s)	283
SspDI	GGCGCC	1 cut(s)	322
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	3 cut(s)	68, 488, 545
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	535, 541, 617
TaiI	ACGT	3 cut(s)	170, 209, 234
TaqI	TCGA	4 cut(s)	237, 255, 363, 422
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	1 cut(s)	283
TauI	GCSGC	6 cut(s)	65, 154, 199, 392, 602, 680
TfiI	GAWTC	3 cut(s)	5, 313, 450
TscAI	CASTG	2 cut(s)	207, 345
TseFI	GTSAC	2 cut(s)	541, 611
TseI	GCWGC	6 cut(s)	219, 575, 596, 644, 647, 656
Tsp45I	GTSAC	2 cut(s)	541, 611
TspRI	CASTG	2 cut(s)	207, 345
VneI	GTGCAC	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	20, 72
XmnI	GAANNNNTTC	2 cut(s)	167, 428
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.