Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013799

Physical Location & Seq

Genomic Coordinates Reverse (-)

3609012 .. 3611381

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGATTCAGCTTCAGGGGGAACCGGACCACCCGACCCGAATACCAGCGGAGGAGAGGGCCCATCATCGGCAGCAACCGGGTCGATAGCCGCGGCTGCTGGTGGTGCCGTTGTTCCAGCAGCAGCAGCCGAGGCCTCATCGTCTCCAGCCCCGCCGAGCCGCTACGAGTCGCAGAAGCGGCGGGACTGGAACACCTTCCTGCAGTACCTCAAGAACCACAAGCCGCCGCTGACGCTGGCACGGTGCAGTGGGGCCCACGTGATCGAGTTCCTCAAGTACCTCGACCAGTTCGGGAAGACCAAGGTCCACGCCGCCGGCTGCCCCTACTTCGGGCACCCCAACCCCCCTGCCCCGTGCGCCTGCCCGCTCAAGCAGGCCTGGGGCAGCCTCGACGCGCTCATCGGACGACTCAGAGCCGCCTACGAGGAGAACGGTGGACGGCCCGAGTCGAATCCGTTCGGGGCTCGGGCCGTCAGGATTTACTTGAGGGAGGTGAGAGAAGGTCAGGCCAAGGCTAGGGGGATCCCGTACGAGAAAAAGAAACGGAAACGGCCGACCGTTACGGCCACCGCGGTTGTCGGGAATGTGTCGGCGGGTCCCTCTCAAGGAGGAGGTGATGGCGATGTCGGTGGTGGTGATGGCGGCGGTGGTTCAAGTACCACTGCTGCTGATGCTGCTACTACTAGTACGGCAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

233

Amino Acids

23.53

Weight (kDa)

9.32

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07090 AT5G58500
fragaria_vesca	FvH4_3g39410
malus_domestica	MD03G1061600.v1.1 MD11G1065300.v1.1
prunus_persica	Prupe.6G051600_v2.0.a1
pyrus_communis	pycom11g05530
rosa_chinensis	RchiOBHm_Chr5g0070951
rosa_laevigata	RLG00000036174
rosa_multiflora	Rmu_sc0006203.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010220
rosa_rugosa	Rorug05G0408800
rosa_samantha	Rh5AG464900 Rh5BG483600 Rh5CG508300 Rh5DG495200
rosa_wichuraiana	Rw5G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	104, 333
AccBSI	CCGCTC	1 cut(s)	367
AccII	CGCG	3 cut(s)	92, 395, 572
AclWI	GGATC	2 cut(s)	517, 530
AcoI	YGGCCR	2 cut(s)	551, 564
AcvI	CACGTG	1 cut(s)	259
AfaI	GTAC	5 cut(s)	206, 278, 530, 658, 688
AfiI	CCNNNNNNNGG	5 cut(s)	67, 329, 330, 516, 605
AgsI	TTSAA	1 cut(s)	654
AhlI	ACTAGT	1 cut(s)	683
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	2 cut(s)	517, 530
Ama87I	CYCGRG	2 cut(s)	443, 465
AoxI	GGCC	9 cut(s)	58, 132, 252, 375, 440, 468, 507, 551, 564
ApaI	GGGCCC	2 cut(s)	62, 256
ApeKI	GCWGC	9 cut(s)	71, 95, 119, 122, 125, 318, 384, 665, 674
Asp700I	GAANNNNTTC	2 cut(s)	194, 455
AspLEI	GCGC	2 cut(s)	359, 397
AspS9I	GGNCC	9 cut(s)	26, 58, 59, 252, 253, 304, 441, 468, 596
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	505, 626, 647
AvaI	CYCGRG	2 cut(s)	443, 465
AvaII	GGWCC	3 cut(s)	26, 304, 596
BaeGI	GKGCMC	3 cut(s)	62, 256, 336
BamHI	GGATCC	1 cut(s)	522
BanI	GGYRCC	2 cut(s)	104, 333
BanII	GRGCYC	3 cut(s)	62, 256, 466
BbrPI	CACGTG	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	9 cut(s)	82, 83, 131, 134, 137, 305, 396, 652, 661
BccI	CCATC	3 cut(s)	70, 611, 632
BceAI	ACGGC	5 cut(s)	92, 455, 455, 566, 579
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BciT130I	CCWGG	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	147
BcuI	ACTAGT	1 cut(s)	683
BfaI	CTAG	2 cut(s)	516, 684
BfmI	CTRYAG	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	79, 379
Bme18I	GGWCC	3 cut(s)	26, 304, 596
BmeT110I	CYCGRG	2 cut(s)	443, 465
BmgT120I	GGNCC	9 cut(s)	26, 58, 59, 252, 253, 304, 441, 468, 596
BmiI	GGNNCC	9 cut(s)	22, 60, 106, 253, 254, 335, 524, 597, 598
BmrFI	CCNGG	2 cut(s)	79, 379
BmsI	GCATC	1 cut(s)	661
BoxI	GACNNNNGTC	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	129
BpuEI	CTTGAG	5 cut(s)	194, 257, 353, 505, 588
BpuMI	CCSGG	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	259
BsaJI	CCNNGG	6 cut(s)	90, 129, 300, 378, 510, 570
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 329, 330, 516, 605
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	191, 286
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	6 cut(s)	90, 129, 300, 378, 510, 570
BseLI	CCNNNNNNNGG	5 cut(s)	67, 329, 330, 516, 605
BseMII	CTCAG	1 cut(s)	424
BseNI	ACTGG	2 cut(s)	191, 286
BseRI	GAGGAG	3 cut(s)	66, 440, 624
BseSI	GKGCMC	3 cut(s)	62, 256, 336
BseX3I	CGGCCG	1 cut(s)	551
BseXI	GCAGC	9 cut(s)	82, 83, 131, 134, 137, 305, 396, 652, 661
BsgI	GTGCAG	1 cut(s)	265
Bsh1236I	CGCG	3 cut(s)	92, 395, 572
Bsh1285I	CGRYCG	2 cut(s)	554, 558
BshFI	GGCC	9 cut(s)	60, 134, 254, 377, 442, 470, 509, 553, 566
BshNI	GGYRCC	2 cut(s)	104, 333
BsiEI	CGRYCG	2 cut(s)	554, 558
BsiHKCI	CYCGRG	2 cut(s)	443, 465
BsiSI	CCGG	3 cut(s)	24, 78, 315
BsiWI	CGTACG	1 cut(s)	528
BslFI	GGGAC	2 cut(s)	197, 582
BslI	CCNNNNNNNGG	5 cut(s)	67, 329, 330, 516, 605
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	2 cut(s)	197, 582
BsnI	GGCC	9 cut(s)	60, 134, 254, 377, 442, 470, 509, 553, 566
BsoBI	CYCGRG	2 cut(s)	443, 465
Bsp120I	GGGCCC	2 cut(s)	58, 252
Bsp1286I	GDGCHC	4 cut(s)	62, 256, 336, 466
Bsp143I	GATC	2 cut(s)	261, 522
BspANI	GGCC	9 cut(s)	60, 134, 254, 377, 442, 470, 509, 553, 566
BspCNI	CTCAG	1 cut(s)	423
BspFNI	CGCG	3 cut(s)	92, 395, 572
BspLI	GGNNCC	9 cut(s)	22, 60, 106, 253, 254, 335, 524, 597, 598
BspMAI	CTGCAG	1 cut(s)	204
BspPI	GGATC	2 cut(s)	517, 530
BspT107I	GGYRCC	2 cut(s)	104, 333
BsrBI	CCGCTC	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	191, 286
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	6 cut(s)	90, 129, 300, 378, 510, 570
BssMI	GATC	2 cut(s)	261, 522
BssT1I	CCWWGG	2 cut(s)	300, 510
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	3 cut(s)	243, 434, 559
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	5 cut(s)	237, 316, 361, 365, 375
BstDEI	CTNAG	1 cut(s)	410
BstDSI	CCRYGG	2 cut(s)	90, 570
BstFNI	CGCG	3 cut(s)	92, 395, 572
BstHHI	GCGC	2 cut(s)	359, 397
BstKTI	GATC	2 cut(s)	264, 525
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	261, 522
BstMCI	CGRYCG	2 cut(s)	554, 558
BstMWI	GCNNNNNNNGC	9 cut(s)	95, 104, 125, 131, 178, 232, 356, 671, 674
BstNI	CCWGG	1 cut(s)	379
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	77, 377
BstSFI	CTRYAG	1 cut(s)	200
BstSLI	GKGCMC	3 cut(s)	62, 256, 336
BstUI	CGCG	3 cut(s)	92, 395, 572
BstV1I	GCAGC	9 cut(s)	82, 83, 131, 134, 137, 305, 396, 652, 661
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	522
BstZI	CGGCCG	1 cut(s)	551
BsuRI	GGCC	9 cut(s)	60, 134, 254, 377, 442, 470, 509, 553, 566
BtgI	CCRYGG	2 cut(s)	90, 570
BtgZI	GCGATG	1 cut(s)	636
BtsI	GCAGTG	2 cut(s)	253, 660
BtsIMutI	CAGTG	2 cut(s)	253, 660
Cac8I	GCNNGC	5 cut(s)	237, 316, 361, 365, 375
CfoI	GCGC	2 cut(s)	359, 397
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	9 cut(s)	26, 58, 59, 252, 253, 304, 441, 468, 596
Cfr42I	CCGCGG	2 cut(s)	93, 573
CseI	GACGC	2 cut(s)	241, 401
Csp6I	GTAC	5 cut(s)	205, 277, 529, 657, 687
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviQI	GTAC	5 cut(s)	205, 277, 529, 657, 687
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	2 cut(s)	263, 524
DpnII	GATC	2 cut(s)	261, 522
EaeI	YGGCCR	2 cut(s)	551, 564
EagI	CGGCCG	1 cut(s)	551
EclXI	CGGCCG	1 cut(s)	551
Eco130I	CCWWGG	2 cut(s)	300, 510
Eco147I	AGGCCT	2 cut(s)	134, 377
Eco24I	GRGCYC	3 cut(s)	62, 256, 466
Eco47I	GGWCC	3 cut(s)	26, 304, 596
Eco52I	CGGCCG	1 cut(s)	551
Eco72I	CACGTG	1 cut(s)	259
Eco88I	CYCGRG	2 cut(s)	443, 465
EcoO109I	RGGNCCY	3 cut(s)	58, 252, 596
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	2 cut(s)	300, 510
EcoT38I	GRGCYC	3 cut(s)	62, 256, 466
ErhI	CCWWGG	2 cut(s)	300, 510
Esp3I	CGTCTC	1 cut(s)	147
FaiI	YATR	1 cut(s)	697
FaqI	GGGAC	2 cut(s)	197, 582
FauI	CCCGC	4 cut(s)	159, 174, 372, 586
FriOI	GRGCYC	3 cut(s)	62, 256, 466
FspBI	CTAG	2 cut(s)	516, 684
GlaI	GCGC	2 cut(s)	358, 396
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	9 cut(s)	60, 134, 254, 377, 442, 470, 509, 553, 566
HapII	CCGG	3 cut(s)	24, 78, 315
HgaI	GACGC	2 cut(s)	241, 401
HhaI	GCGC	2 cut(s)	359, 397
Hin6I	GCGC	2 cut(s)	357, 395
HinP1I	GCGC	2 cut(s)	357, 395
HinfI	GANTC	5 cut(s)	5, 167, 408, 446, 451
HpaII	CCGG	3 cut(s)	24, 78, 315
HphI	GGTGA	3 cut(s)	505, 626, 647
Hpy166II	GTNNAC	2 cut(s)	307, 437
Hpy188I	TCNGA	2 cut(s)	404, 413
Hpy188III	TCNNGA	4 cut(s)	211, 292, 475, 580
Hpy8I	GTNNAC	2 cut(s)	307, 437
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	2 cut(s)	205, 494
HpyCH4III	ACNGT	3 cut(s)	243, 434, 559
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	2 cut(s)	202, 246
HpyF10VI	GCNNNNNNNGC	9 cut(s)	95, 104, 125, 131, 178, 232, 356, 671, 674
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	1 cut(s)	258
HspAI	GCGC	2 cut(s)	357, 395
KflI	GGGWCCC	1 cut(s)	596
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
KspI	CCGCGG	2 cut(s)	93, 573
Kzo9I	GATC	2 cut(s)	261, 522
Lsp1109I	GCAGC	9 cut(s)	82, 83, 131, 134, 137, 305, 396, 652, 661
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	2 cut(s)	516, 684
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	2 cut(s)	263, 524
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	2 cut(s)	261, 522
MboII	GAAGA	1 cut(s)	307
MflI	RGATCY	1 cut(s)	522
MhlI	GDGCHC	4 cut(s)	62, 256, 336, 466
MlyI	GAGTC	3 cut(s)	176, 402, 455
MroNI	GCCGGC	1 cut(s)	314
MroXI	GAANNNNTTC	2 cut(s)	194, 455
MspA1I	CMGCKG	4 cut(s)	48, 92, 229, 572
MspI	CCGG	3 cut(s)	24, 78, 315
MspR9I	CCNGG	2 cut(s)	79, 379
MvaI	CCWGG	1 cut(s)	379
MvnI	CGCG	3 cut(s)	92, 395, 572
MwoI	GCNNNNNNNGC	9 cut(s)	95, 104, 125, 131, 178, 232, 356, 671, 674
NaeI	GCCGGC	1 cut(s)	316
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	2 cut(s)	261, 522
NgoMIV	GCCGGC	1 cut(s)	314
NlaIV	GGNNCC	9 cut(s)	22, 60, 106, 253, 254, 335, 524, 597, 598
NmeAIII	GCCGAG	2 cut(s)	154, 180
PceI	AGGCCT	2 cut(s)	134, 377
PdiI	GCCGGC	1 cut(s)	316
PdmI	GAANNNNTTC	2 cut(s)	194, 455
PfeI	GAWTC	2 cut(s)	5, 451
Pfl23II	CGTACG	1 cut(s)	528
PleI	GAGTC	3 cut(s)	175, 402, 454
PmaCI	CACGTG	1 cut(s)	259
PmlI	CACGTG	1 cut(s)	259
PpsI	GAGTC	3 cut(s)	175, 402, 454
Ppu21I	YACGTR	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	596
PshAI	GACNNNNGTC	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	377
PspCI	CACGTG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	377
PspLI	CGTACG	1 cut(s)	528
PspN4I	GGNNCC	9 cut(s)	22, 60, 106, 253, 254, 335, 524, 597, 598
PspOMI	GGGCCC	2 cut(s)	58, 252
PspPI	GGNCC	9 cut(s)	26, 58, 59, 252, 253, 304, 441, 468, 596
PspPPI	RGGWCCY	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	522
RsaI	GTAC	5 cut(s)	206, 278, 530, 658, 688
RsaNI	GTAC	5 cut(s)	205, 277, 529, 657, 687
SacII	CCGCGG	2 cut(s)	93, 573
Sau3AI	GATC	2 cut(s)	261, 522
Sau96I	GGNCC	9 cut(s)	26, 58, 59, 252, 253, 304, 441, 468, 596
SchI	GAGTC	3 cut(s)	176, 402, 455
ScrFI	CCNGG	2 cut(s)	79, 379
SduI	GDGCHC	4 cut(s)	62, 256, 336, 466
SetI	ASST	9 cut(s)	13, 197, 210, 261, 282, 306, 495, 505, 616
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	200
Sfr303I	CCGCGG	2 cut(s)	93, 573
SgrBI	CCGCGG	2 cut(s)	93, 573
SinI	GGWCC	3 cut(s)	26, 304, 596
SmlI	CTYRAG	5 cut(s)	209, 272, 368, 484, 603
SmoI	CTYRAG	5 cut(s)	209, 272, 368, 484, 603
SpeI	ACTAGT	1 cut(s)	683
SseBI	AGGCCT	2 cut(s)	134, 377
SspMI	CTAG	2 cut(s)	516, 684
StuI	AGGCCT	2 cut(s)	134, 377
StyD4I	CCNGG	2 cut(s)	77, 377
StyI	CCWWGG	2 cut(s)	300, 510
TaaI	ACNGT	3 cut(s)	243, 434, 559
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	5 cut(s)	83, 264, 282, 390, 449
TauI	GCSGC	9 cut(s)	92, 95, 162, 181, 226, 229, 314, 419, 645
TfiI	GAWTC	2 cut(s)	5, 451
TscAI	CASTG	2 cut(s)	253, 667
TseI	GCWGC	9 cut(s)	71, 95, 119, 122, 125, 318, 384, 665, 674
TspGWI	ACGGA	2 cut(s)	444, 559
TspRI	CASTG	2 cut(s)	253, 667
VpaK11BI	GGWCC	3 cut(s)	26, 304, 596
XmnI	GAANNNNTTC	2 cut(s)	194, 455
XspI	CTAG	2 cut(s)	516, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.