Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013799

Physical Location & Seq

Genomic Coordinates Reverse (-)

23645062 .. 23646347

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGGGAGAAACCGCAGCCAAAGCAGCGGCAAGTTCCTCCTCATCCCCGAGCCGGTACGAGTCTCAAAAGAGGCGAGACTGGAACACTTTCCTTCAGTATCTAAGGAACCACAAGCCACCTCTGAATCTGTCTCGTTGTAGTGGCGCACACGTCCTTGAGTTCCTTAAGTACCTCGACCAGTTTGGTAAGACCAAAGTCCATGCCACGGCTTGTCCCTTCTTCGGACAACCTAACCCACCGTCTCAGTGCACTTGCCCTCTCAAGCAAGCTTGGGGAAGTCTCGATGCTCTCATCGGCCGTCTAAGGGCTGCTTTCGAGGAAATCGGCGGTGGTCTTCCTGAGTCAAACCCTTTCGCTGCCAAGGCTGTTAGGATCTATCTTAAAGAAGTCCGTCAAACACAGGCTAAGGCTCGAGGGATTCCTTACGACAAGAAGAAAAGAAAACGTCCGCATACAGACACGGCAACTCCAATCGCCGGTGACGGAGACGATGCCGAAGGAAGTGGTGGTGCTGCTTTGGTCGTTACGGCTGCAACTACGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

182

Amino Acids

19.69

Weight (kDa)

9.54

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	13 - 133	9.7e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07090 AT5G58500
fragaria_vesca	FvH4_3g39410
malus_domestica	MD03G1061600.v1.1 MD11G1065300.v1.1
prunus_persica	Prupe.6G051600_v2.0.a1
pyrus_communis	pycom11g05530
rosa_chinensis	RchiOBHm_Chr5g0070951
rosa_laevigata	RLG00000036174
rosa_multiflora	Rmu_sc0006203.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010220
rosa_rugosa	Rorug05G0408800
rosa_samantha	Rh5AG464900 Rh5BG483600 Rh5CG508300 Rh5DG495200
rosa_wichuraiana	Rw5G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	15, 29, 330, 452
AclWI	GGATC	1 cut(s)	383
AcoI	YGGCCR	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	2 cut(s)	59, 173
AfiI	CCNNNNNNNGG	5 cut(s)	54, 208, 224, 307, 479
AflII	CTTAAG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	151
AjiI	CACGTC	1 cut(s)	154
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	6 cut(s)	69, 72, 138, 249, 287, 483
Alw44I	GTGCAC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	2 cut(s)	49, 414
AoxI	GGCC	1 cut(s)	298
ApaLI	GTGCAC	1 cut(s)	250
ApeKI	GCWGC	6 cut(s)	17, 26, 311, 359, 515, 533
Asp700I	GAANNNNTTC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	494
AvaI	CYCGRG	2 cut(s)	49, 414
BaeGI	GKGCMC	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	6 cut(s)	29, 38, 298, 346, 502, 520
BceAI	ACGGC	4 cut(s)	225, 285, 480, 546
BcoDI	GTCTC	6 cut(s)	69, 72, 138, 249, 287, 483
BfrI	CTTAAG	1 cut(s)	167
BisI	GCNGC	7 cut(s)	18, 27, 30, 312, 360, 516, 534
BlsI	GCNGC	7 cut(s)	19, 28, 31, 313, 361, 517, 535
BmeT110I	CYCGRG	2 cut(s)	49, 414
BmgBI	CACGTC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	110
BmsI	GCATC	2 cut(s)	277, 484
BoxI	GACNNNNGTC	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	179, 248
BsaJI	CCNNGG	2 cut(s)	207, 363
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 208, 224, 307, 479
Bse118I	RCCGGY	2 cut(s)	54, 479
Bse1I	ACTGG	2 cut(s)	86, 181
BseDI	CCNNGG	2 cut(s)	207, 363
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	5 cut(s)	54, 208, 224, 307, 479
BseMII	CTCAG	2 cut(s)	260, 333
BseNI	ACTGG	2 cut(s)	86, 181
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	254
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	6 cut(s)	29, 38, 298, 346, 502, 520
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	254
BsiHKCI	CYCGRG	2 cut(s)	49, 414
BsiSI	CCGG	2 cut(s)	55, 480
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	5 cut(s)	54, 208, 224, 307, 479
BsmAI	GTCTC	6 cut(s)	69, 72, 138, 249, 287, 483
BsmBI	CGTCTC	2 cut(s)	249, 483
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	300
BsoBI	CYCGRG	2 cut(s)	49, 414
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	375
BspACI	CCGC	4 cut(s)	15, 29, 330, 452
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	2 cut(s)	259, 334
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	383
BspTI	CTTAAG	1 cut(s)	167
BsrFI	RCCGGY	2 cut(s)	54, 479
BsrI	ACTGG	2 cut(s)	86, 181
BssAI	RCCGGY	2 cut(s)	54, 479
BssECI	CCNNGG	2 cut(s)	207, 363
BssMI	GATC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	243, 544
BstAFI	CTTAAG	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	5 cut(s)	104, 246, 305, 342, 408
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	1 cut(s)	378
BstMAI	GTCTC	6 cut(s)	69, 72, 138, 249, 287, 483
BstMBI	GATC	1 cut(s)	375
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 26, 365
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	6 cut(s)	29, 38, 298, 346, 502, 520
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BstZI	CGGCCG	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	207
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	2 cut(s)	54, 479
Csp6I	GTAC	2 cut(s)	58, 172
CviAII	CATG	1 cut(s)	203
CviQI	GTAC	2 cut(s)	58, 172
DdeI	CTNAG	5 cut(s)	104, 246, 305, 342, 408
DpnI	GATC	1 cut(s)	377
DpnII	GATC	1 cut(s)	375
EaeI	YGGCCR	1 cut(s)	298
EagI	CGGCCG	1 cut(s)	298
EclXI	CGGCCG	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	363
Eco52I	CGGCCG	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	2 cut(s)	49, 414
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
Esp3I	CGTCTC	2 cut(s)	249, 483
FaeI	CATG	1 cut(s)	206
FaiI	YATR	3 cut(s)	204, 456, 547
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	7 cut(s)	18, 27, 30, 312, 360, 516, 534
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	7 cut(s)	18, 27, 30, 312, 360, 516, 534
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	7 cut(s)	18, 27, 30, 312, 360, 516, 534
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	2 cut(s)	55, 480
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	4 cut(s)	62, 127, 344, 421
HpaII	CCGG	2 cut(s)	55, 480
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	126, 227
Hpy188III	TCNNGA	2 cut(s)	284, 341
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	3 cut(s)	104, 229, 494
HpyCH4III	ACNGT	2 cut(s)	243, 544
HpyCH4IV	ACGT	2 cut(s)	153, 448
HpyCH4V	TGCA	2 cut(s)	252, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 26, 365
HpyF3I	CTNAG	5 cut(s)	104, 246, 305, 342, 408
HpySE526I	ACGT	2 cut(s)	153, 448
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	375
LpnPI	CCDG	6 cut(s)	67, 68, 194, 354, 389, 493
Lsp1109I	GCAGC	6 cut(s)	29, 38, 298, 346, 502, 520
LweI	GCATC	2 cut(s)	277, 484
MaeII	ACGT	2 cut(s)	153, 448
MaeIII	GTNAC	2 cut(s)	482, 526
MalI	GATC	1 cut(s)	377
MboI	GATC	1 cut(s)	375
MboII	GAAGA	3 cut(s)	214, 329, 448
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	71, 353
MnlI	CCTC	8 cut(s)	49, 52, 66, 132, 185, 270, 313, 410
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	2 cut(s)	168, 384
MspA1I	CMGCKG	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	167
MspI	CCGG	2 cut(s)	55, 480
MwoI	GCNNNNNNNGC	3 cut(s)	23, 26, 365
NdeII	GATC	1 cut(s)	375
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	482
PaeR7I	CTCGAG	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	127, 421
PkrI	GCNGC	7 cut(s)	19, 28, 31, 313, 361, 517, 535
PleI	GAGTC	2 cut(s)	70, 352
PpsI	GAGTC	2 cut(s)	70, 352
PshAI	GACNNNNGTC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	110
PspXI	VCTCGAGB	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	2 cut(s)	59, 173
RsaNI	GTAC	2 cut(s)	58, 172
SaqAI	TTAA	2 cut(s)	168, 384
SatI	GCNGC	7 cut(s)	18, 27, 30, 312, 360, 516, 534
Sau3AI	GATC	1 cut(s)	375
SchI	GAGTC	2 cut(s)	71, 353
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	6 cut(s)	124, 156, 177, 235, 274, 451
SfaNI	GCATC	2 cut(s)	277, 484
Sfr274I	CTCGAG	1 cut(s)	414
SgrAI	CRCCGGYG	1 cut(s)	479
SlaI	CTCGAG	1 cut(s)	414
SmlI	CTYRAG	4 cut(s)	158, 167, 263, 414
SmoI	CTYRAG	4 cut(s)	158, 167, 263, 414
SsiI	CCGC	4 cut(s)	15, 29, 330, 452
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	243, 544
TaiI	ACGT	2 cut(s)	156, 451
TaqI	TCGA	4 cut(s)	177, 285, 318, 415
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	127, 421
Tru1I	TTAA	2 cut(s)	168, 384
Tru9I	TTAA	2 cut(s)	168, 384
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	6 cut(s)	17, 26, 311, 359, 515, 533
Tsp45I	GTSAC	1 cut(s)	482
TspGWI	ACGGA	2 cut(s)	383, 501
TspRI	CASTG	1 cut(s)	254
Vha464I	CTTAAG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.