RchiOBHm_Chr5g0070951

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013799
Physical Location & Seq
Forward (+)
76770751 .. 76772262
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34611

Sequence Viewer

Length: 693 bp
ATGGATTCAGCTTCCGGTGGACCATCCGACCCTAATAGCGTCGGAGGCGAGGCTCCACCCGCCGCAACCGGGTCCGCCACAACGACAGCTTCGGCTTCGGCTTCGGCTTCGGCTTCGTCATCTCCAGCTCCGCCGAGCCGTTACGAGTCGCAGAAGCGGCGAGACTGGAACACGTTCCTGCAGTACCTGAAGAACCACAAGCCGCCACTGACGTTGGCGCGGTGCAGCGGGGCCCACGTGATCGAGTTCCTCAAGTACCTCGATCAGTTCGGGAAGACTAAGGTGCACAATTCGGGGTGTCCATATTTCGGTCATCCGAATCCTCCGGCGCCGTGCGCCTGCCCACTCAAGCAGGCGTGGGGTAGCCTCGACGCGCTCATCGGACGGCTGAGGGCGGCCTACGAGGAGAACGGCGGACGGCCCGAGTCGAACCCGTTCGGGGCACGCGCGGTGAGAATCTACTTGAGGGAGGTCAGGGAGGGTCAGGCCAAGGCCAGGGGTATTCCCTACGAGAAAAAGAAGCGGAAACGGCCAAGTACCGTTACGGTGGCCGGGAATGTGTCGGTGGGTTCCAGTAGTGCTGCTCAACAAGGCGGCGATGCTGCCGCTGGCGGAGGTGACGGTGCTCCAACTGGTCAATCTACTGCTGCTGCTGCTCCTGCAGCTGTTACAACTACTACTGCGGCAGTATAG

Protein Analysis

230

Amino Acids

23.55

Weight (kDa)

9.63

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALOG_dom PF04852 37 - 160 5.4e-67 ALOG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013799)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07090 AT5G58500
fragaria_vesca FvH4_3g39410
malus_domestica MD03G1061600.v1.1 MD11G1065300.v1.1
prunus_persica Prupe.6G051600_v2.0.a1
pyrus_communis pycom11g05530
rosa_chinensis RchiOBHm_Chr5g0070951
rosa_laevigata RLG00000036174
rosa_multiflora Rmu_sc0006203.1_g000005
rosa_roxburghii Rroxscaffold_1G00010220
rosa_rugosa Rorug05G0408800
rosa_samantha Rh5AG464900 Rh5BG483600 Rh5CG508300 Rh5DG495200
rosa_wichuraiana Rw5G043250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AccII CGCG 4 cut(s) 220, 374, 447, 449
AcoI YGGCCR 2 cut(s) 530, 549
AcuI CTGAAG 1 cut(s) 209
AcvI CACGTG 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 3 cut(s) 185, 257, 538
AfiI CCNNNNNNNGG 4 cut(s) 69, 308, 439, 495
AflIII ACRYGT 1 cut(s) 171
AjnI CCWGG 1 cut(s) 494
AluBI AGCT 4 cut(s) 11, 89, 128, 665
AluI AGCT 4 cut(s) 11, 89, 128, 665
Alw21I GWGCWC 2 cut(s) 288, 628
Alw26I GTCTC 1 cut(s) 156
Alw44I GTGCAC 1 cut(s) 284
AlwNI CAGNNNCTG 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 7 cut(s) 231, 396, 419, 486, 492, 530, 549
ApaI GGGCCC 1 cut(s) 235
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 7 cut(s) 225, 581, 602, 647, 650, 653, 662
Asp700I GAANNNNTTC 2 cut(s) 173, 434
AspLEI GCGC 5 cut(s) 220, 331, 338, 376, 449
AspS9I GGNCC 5 cut(s) 20, 72, 231, 232, 420
AsuC2I CCSGG 2 cut(s) 70, 553
AsuHPI GGTGA 2 cut(s) 463, 629
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 2 cut(s) 20, 72
BaeGI GKGCMC 3 cut(s) 235, 288, 445
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 235
BbrPI CACGTG 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 2 cut(s) 288, 628
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 7 cut(s) 237, 568, 589, 634, 637, 640, 674
BccI CCATC 1 cut(s) 31
BceAI ACGGC 6 cut(s) 123, 316, 401, 427, 434, 545
BciT130I CCWGG 1 cut(s) 496
BcnI CCSGG 2 cut(s) 70, 553
BcoDI GTCTC 1 cut(s) 156
BfmI CTRYAG 2 cut(s) 179, 660
BfoI RGCGCY 1 cut(s) 332
Bme1390I CCNGG 3 cut(s) 70, 496, 553
Bme18I GGWCC 2 cut(s) 20, 72
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 5 cut(s) 20, 72, 231, 232, 420
BmiI GGNNCC 6 cut(s) 54, 73, 232, 233, 330, 571
BmrFI CCNGG 3 cut(s) 70, 496, 553
BmsI GCATC 1 cut(s) 589
BpiI GAAGAC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 3 cut(s) 236, 332, 484
BpuMI CCSGG 2 cut(s) 70, 553
BsaAI YACGTR 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 489, 495
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 308, 439, 495
Bse1I ACTGG 3 cut(s) 170, 573, 637
BseBI CCWGG 1 cut(s) 496
BseDI CCNNGG 2 cut(s) 489, 495
BseGI GGATG 2 cut(s) 23, 313
BseLI CCNNNNNNNGG 4 cut(s) 69, 308, 439, 495
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 3 cut(s) 170, 573, 637
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 3 cut(s) 235, 288, 445
BseXI GCAGC 7 cut(s) 237, 568, 589, 634, 637, 640, 674
BsgI GTGCAG 1 cut(s) 244
Bsh1236I CGCG 4 cut(s) 220, 374, 447, 449
BshFI GGCC 7 cut(s) 233, 398, 421, 488, 494, 532, 551
BshNI GGYRCC 1 cut(s) 328
BsiHKAI GWGCWC 2 cut(s) 288, 628
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 4 cut(s) 15, 69, 326, 552
BslI CCNNNNNNNGG 4 cut(s) 69, 308, 439, 495
BsmAI GTCTC 1 cut(s) 156
BsnI GGCC 7 cut(s) 233, 398, 421, 488, 494, 532, 551
BsoBI CYCGRG 1 cut(s) 422
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 4 cut(s) 235, 288, 445, 628
Bsp143I GATC 2 cut(s) 240, 262
BspANI GGCC 7 cut(s) 233, 398, 421, 488, 494, 532, 551
BspCNI CTCAG 1 cut(s) 381
BspFNI CGCG 4 cut(s) 220, 374, 447, 449
BspLI GGNNCC 6 cut(s) 54, 73, 232, 233, 330, 571
BspMAI CTGCAG 2 cut(s) 183, 664
BspT107I GGYRCC 1 cut(s) 328
BsrI ACTGG 3 cut(s) 170, 573, 637
BssECI CCNNGG 2 cut(s) 489, 495
BssMI GATC 2 cut(s) 240, 262
BssNI GRCGYC 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 496
Bst4CI ACNGT 3 cut(s) 541, 547, 623
BstACI GRCGYC 1 cut(s) 329
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 4 cut(s) 340, 354, 445, 610
BstDEI CTNAG 2 cut(s) 279, 389
BstF5I GGATG 2 cut(s) 23, 313
BstFNI CGCG 4 cut(s) 220, 374, 447, 449
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 5 cut(s) 220, 331, 338, 376, 449
BstKTI GATC 2 cut(s) 243, 265
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 2 cut(s) 240, 262
BstMWI GCNNNNNNNGC 8 cut(s) 45, 59, 157, 335, 529, 653, 659, 662
BstNI CCWGG 1 cut(s) 496
BstSCI CCNGG 3 cut(s) 68, 494, 551
BstSFI CTRYAG 2 cut(s) 179, 660
BstSLI GKGCMC 3 cut(s) 235, 288, 445
BstUI CGCG 4 cut(s) 220, 374, 447, 449
BstV1I GCAGC 7 cut(s) 237, 568, 589, 634, 637, 640, 674
BstV2I GAAGAC 1 cut(s) 281
BsuRI GGCC 7 cut(s) 233, 398, 421, 488, 494, 532, 551
BtgZI GCGATG 1 cut(s) 612
BtsCI GGATG 2 cut(s) 23, 313
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 4 cut(s) 340, 354, 445, 610
CaiI CAGNNNCTG 1 cut(s) 187
CfoI GCGC 5 cut(s) 220, 331, 338, 376, 449
Cfr13I GGNCC 5 cut(s) 20, 72, 231, 232, 420
CseI GACGC 2 cut(s) 28, 380
Csp6I GTAC 3 cut(s) 184, 256, 537
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviQI GTAC 3 cut(s) 184, 256, 537
DdeI CTNAG 2 cut(s) 279, 389
DinI GGCGCC 1 cut(s) 330
DpnI GATC 2 cut(s) 242, 264
DpnII GATC 2 cut(s) 240, 262
EaeI YGGCCR 2 cut(s) 530, 549
EciI GGCGGA 4 cut(s) 64, 120, 429, 627
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 20, 72
Eco57I CTGAAG 1 cut(s) 209
Eco72I CACGTG 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 235
EgeI GGCGCC 1 cut(s) 330
EheI GGCGCC 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 489
FaiI YATR 2 cut(s) 304, 691
FauI CCCGC 2 cut(s) 67, 221
FokI GGATG 2 cut(s) 10, 300
FriOI GRGCYC 1 cut(s) 235
GlaI GCGC 5 cut(s) 219, 330, 337, 375, 448
GsuI CTGGAG 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 7 cut(s) 233, 398, 421, 488, 494, 532, 551
HapII CCGG 4 cut(s) 15, 69, 326, 552
HgaI GACGC 2 cut(s) 28, 380
HhaI GCGC 5 cut(s) 220, 331, 338, 376, 449
Hin1I GRCGYC 1 cut(s) 329
Hin6I GCGC 5 cut(s) 218, 329, 336, 374, 447
HinP1I GCGC 5 cut(s) 218, 329, 336, 374, 447
HinfI GANTC 5 cut(s) 5, 146, 319, 425, 456
HpaII CCGG 4 cut(s) 15, 69, 326, 552
HphI GGTGA 2 cut(s) 463, 629
Hpy166II GTNNAC 2 cut(s) 20, 286
Hpy188I TCNGA 4 cut(s) 28, 44, 318, 383
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 2 cut(s) 20, 286
Hpy99I CGWCG 2 cut(s) 44, 374
HpyCH4III ACNGT 3 cut(s) 541, 547, 623
HpyCH4IV ACGT 3 cut(s) 173, 212, 237
HpyCH4V TGCA 4 cut(s) 181, 225, 286, 662
HpyF10VI GCNNNNNNNGC 8 cut(s) 45, 59, 157, 335, 529, 653, 659, 662
HpyF3I CTNAG 2 cut(s) 279, 389
HpySE526I ACGT 3 cut(s) 173, 212, 237
Hsp92I GRCGYC 1 cut(s) 329
HspAI GCGC 5 cut(s) 218, 329, 336, 374, 447
KasI GGCGCC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 240, 262
LmnI GCTCC 4 cut(s) 58, 133, 631, 661
Lsp1109I GCAGC 7 cut(s) 237, 568, 589, 634, 637, 640, 674
LweI GCATC 1 cut(s) 589
MaeII ACGT 3 cut(s) 173, 212, 237
MaeIII GTNAC 4 cut(s) 140, 541, 617, 667
MalI GATC 2 cut(s) 242, 264
MboI GATC 2 cut(s) 240, 262
MboII GAAGA 2 cut(s) 202, 286
MhlI GDGCHC 4 cut(s) 235, 288, 445, 628
MluCI AATT 1 cut(s) 289
Mly113I GGCGCC 1 cut(s) 329
MlyI GAGTC 2 cut(s) 155, 434
MmeI TCCRAC 3 cut(s) 22, 51, 653
MroXI GAANNNNTTC 2 cut(s) 173, 434
MspA1I CMGCKG 3 cut(s) 228, 608, 665
MspI CCGG 4 cut(s) 15, 69, 326, 552
MspR9I CCNGG 3 cut(s) 70, 496, 553
MvaI CCWGG 1 cut(s) 496
MvnI CGCG 4 cut(s) 220, 374, 447, 449
MwoI GCNNNNNNNGC 8 cut(s) 45, 59, 157, 335, 529, 653, 659, 662
NarI GGCGCC 1 cut(s) 329
NciI CCSGG 2 cut(s) 70, 553
NdeII GATC 2 cut(s) 240, 262
NlaIV GGNNCC 6 cut(s) 54, 73, 232, 233, 330, 571
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 617
PdmI GAANNNNTTC 2 cut(s) 173, 434
PfeI GAWTC 3 cut(s) 5, 319, 456
PleI GAGTC 2 cut(s) 154, 433
PluTI GGCGCC 1 cut(s) 332
PmaCI CACGTG 1 cut(s) 238
PmlI CACGTG 1 cut(s) 238
PpsI GAGTC 2 cut(s) 154, 433
Ppu21I YACGTR 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 494
PspCI CACGTG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 494
PspN4I GGNNCC 6 cut(s) 54, 73, 232, 233, 330, 571
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 5 cut(s) 20, 72, 231, 232, 420
PstI CTGCAG 2 cut(s) 183, 664
PstNI CAGNNNCTG 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 3 cut(s) 185, 257, 538
RsaNI GTAC 3 cut(s) 184, 256, 537
Sau3AI GATC 2 cut(s) 240, 262
Sau96I GGNCC 5 cut(s) 20, 72, 231, 232, 420
SchI GAGTC 2 cut(s) 155, 434
ScrFI CCNGG 3 cut(s) 70, 496, 553
SduI GDGCHC 4 cut(s) 235, 288, 445, 628
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 2 cut(s) 179, 660
SfoI GGCGCC 1 cut(s) 330
SinI GGWCC 2 cut(s) 20, 72
SmlI CTYRAG 3 cut(s) 251, 347, 463
SmoI CTYRAG 3 cut(s) 251, 347, 463
Sse9I AATT 1 cut(s) 289
SspDI GGCGCC 1 cut(s) 328
StyD4I CCNGG 3 cut(s) 68, 494, 551
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 3 cut(s) 541, 547, 623
TaiI ACGT 3 cut(s) 176, 215, 240
TaqI TCGA 4 cut(s) 243, 261, 369, 428
TaqII GACCGA 1 cut(s) 299
TasI AATT 1 cut(s) 289
TauI GCSGC 7 cut(s) 65, 160, 205, 398, 597, 608, 686
TfiI GAWTC 3 cut(s) 5, 319, 456
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 617
TseI GCWGC 7 cut(s) 225, 581, 602, 647, 650, 653, 662
Tsp45I GTSAC 1 cut(s) 617
TspRI CASTG 1 cut(s) 213
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 20, 72
XmnI GAANNNNTTC 2 cut(s) 173, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.