Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0013799

Physical Location & Seq

Genomic Coordinates Reverse (-)

4972877 .. 4974459

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1061600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGATTCTGCTTCAGGTGGAGCCGGACCGCCCGACCCGAACGCCAGCAGCAGCGAGGGTCCGTCGTCTTCGTCAAGGTCCGCAGCCCCGGCGGCTACTCCTGTAGCGGCCGAGCCCTTGTCAGCATCTCCCGCTCCGCCGAGCCGCTACGAGTCGCAGAAGCGGCGGGACTGGAACACCTTCCTGCAGTACCTCAAGAACCACAAGCCTCCGCTCACGTTGGCCCGCTGCAGTGGGGCCCACGTCATCGAATTCCTTAAGTACCTCGACCAGTTTGGGAAGACTAAAGTCCACGCCGCCGGCTGCCCCTACTTCGGACACCAGAACCCTCCCGCCCCGTGCGCCTGCCCTCTCAAGCAGGCGTGGGGCAGCCTCGACGCGCTCATCGGACGGCTGAGGGCGGCGTACGAGGAGAACGGGGGACGGCCAGAGTCAAACCCCTTTGGCGCTCGAGCGGTGAGGATTTATTTGAGGGAGGTGAGGGAGGGACAGGCTAAGGCAAGAGGAATTCCCTACGAGAAAAAGAAACGAAAACGGCCGACGGTCACTGCCACTGCGCTTGTCGGGAATATGTCGGTAGCGTCCACTCAAGGTGGCGGTGTTGATGGTGATAGCGGTGGCGGTGTTGATGGTGGCGGTTCAAGTAAAACCGTTGCTGCTGCTGCTGCTACTAGTACTGCACTATCTGTCGCTTCGGTGCTTGCCATAACACCAGAGTACAGTCGAATTTTCTCACAAGTCATGGGGAAACCAGGTTACTGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

256

Amino Acids

26.59

Weight (kDa)

9.62

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	42 - 162	3.2e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07090 AT5G58500
fragaria_vesca	FvH4_3g39410
malus_domestica	MD03G1061600.v1.1 MD11G1065300.v1.1
prunus_persica	Prupe.6G051600_v2.0.a1
pyrus_communis	pycom11g05530
rosa_chinensis	RchiOBHm_Chr5g0070951
rosa_laevigata	RLG00000036174
rosa_multiflora	Rmu_sc0006203.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010220
rosa_rugosa	Rorug05G0408800
rosa_samantha	Rh5AG464900 Rh5BG483600 Rh5CG508300 Rh5DG495200
rosa_wichuraiana	Rw5G043250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	134, 214, 455
AccII	CGCG	1 cut(s)	380
AcoI	YGGCCR	3 cut(s)	108, 425, 536
AcsI	RAATTY	3 cut(s)	251, 507, 726
AfaI	GTAC	5 cut(s)	191, 263, 407, 676, 719
AfiI	CCNNNNNNNGG	1 cut(s)	314
AflII	CTTAAG	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	642
AhlI	ACTAGT	1 cut(s)	671
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	751
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	5 cut(s)	108, 222, 237, 425, 536
ApaI	GGGCCC	1 cut(s)	241
ApoI	RAATTY	3 cut(s)	251, 507, 726
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	4 cut(s)	344, 382, 449, 559
AspS9I	GGNCC	6 cut(s)	26, 59, 78, 223, 237, 238
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	469, 490, 620
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	3 cut(s)	26, 59, 78
BaeGI	GKGCMC	1 cut(s)	241
BanII	GRGCYC	2 cut(s)	117, 241
BbsI	GAAGAC	2 cut(s)	60, 287
BbvCI	CCTCAGC	1 cut(s)	395
BccI	CCATC	2 cut(s)	599, 623
BceAI	ACGGC	3 cut(s)	407, 440, 551
BciT130I	CCWGG	1 cut(s)	753
BcnI	CCSGG	1 cut(s)	89
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	1 cut(s)	672
BfmI	CTRYAG	3 cut(s)	102, 185, 229
BfoI	RGCGCY	1 cut(s)	450
BfrI	CTTAAG	1 cut(s)	257
BglI	GCCNNNNNGGC	1 cut(s)	92
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	2 cut(s)	89, 753
Bme18I	GGWCC	3 cut(s)	26, 59, 78
BmeT110I	CYCGRG	1 cut(s)	450
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	6 cut(s)	26, 59, 78, 223, 237, 238
BmiI	GGNNCC	4 cut(s)	22, 60, 238, 239
BmrFI	CCNGG	2 cut(s)	89, 753
BmsI	GCATC	1 cut(s)	134
BoxI	GACNNNNGTC	1 cut(s)	287
BpiI	GAAGAC	2 cut(s)	60, 287
Bpu10I	CCTNAGC	2 cut(s)	395, 495
BpuEI	CTTGAG	3 cut(s)	179, 338, 573
BpuMI	CCSGG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	3 cut(s)	176, 271, 764
BseBI	CCWGG	1 cut(s)	753
BseDI	CCNNGG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	3 cut(s)	176, 271, 764
BseRI	GAGGAG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	241
BseX3I	CGGCCG	2 cut(s)	108, 536
BsgI	GTGCAG	1 cut(s)	663
Bsh1236I	CGCG	1 cut(s)	380
Bsh1285I	CGRYCG	2 cut(s)	111, 539
BshFI	GGCC	5 cut(s)	110, 224, 239, 427, 538
BsiEI	CGRYCG	2 cut(s)	111, 539
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	3 cut(s)	24, 89, 300
BsiWI	CGTACG	1 cut(s)	405
BslFI	GGGAC	3 cut(s)	182, 435, 501
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmFI	GGGAC	3 cut(s)	182, 435, 501
BsnI	GGCC	5 cut(s)	110, 224, 239, 427, 538
BsoBI	CYCGRG	1 cut(s)	450
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	117, 241
BspANI	GGCC	5 cut(s)	110, 224, 239, 427, 538
BspCNI	CTCAG	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	4 cut(s)	22, 60, 238, 239
BspMAI	CTGCAG	2 cut(s)	189, 233
BspTI	CTTAAG	1 cut(s)	257
BsrBI	CCGCTC	3 cut(s)	134, 214, 455
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	176, 271, 764
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	3 cut(s)	544, 652, 722
BstAFI	CTTAAG	1 cut(s)	257
BstC8I	GCNNGC	6 cut(s)	46, 226, 301, 346, 360, 702
BstDEI	CTNAG	2 cut(s)	395, 495
BstFNI	CGCG	1 cut(s)	380
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	4 cut(s)	344, 382, 449, 559
BstMCI	CGRYCG	2 cut(s)	111, 539
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 92, 131, 163, 341, 662, 665
BstNI	CCWGG	1 cut(s)	753
BstPAI	GACNNNNGTC	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	87, 751
BstSFI	CTRYAG	3 cut(s)	102, 185, 229
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	380
BstV2I	GAAGAC	2 cut(s)	60, 287
BstXI	CCANNNNNNTGG	1 cut(s)	759
BstZI	CGGCCG	2 cut(s)	108, 536
BsuRI	GGCC	5 cut(s)	110, 224, 239, 427, 538
BtrI	CACGTC	1 cut(s)	244
BtsI	GCAGTG	3 cut(s)	238, 546, 552
BtsIMutI	CAGTG	3 cut(s)	238, 546, 552
Cac8I	GCNNGC	6 cut(s)	46, 226, 301, 346, 360, 702
CfoI	GCGC	4 cut(s)	344, 382, 449, 559
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	6 cut(s)	26, 59, 78, 223, 237, 238
CpoI	CGGWCCG	1 cut(s)	26
CseI	GACGC	2 cut(s)	386, 570
CsiI	ACCWGGT	1 cut(s)	751
Csp6I	GTAC	5 cut(s)	190, 262, 406, 675, 718
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CspI	CGGWCCG	1 cut(s)	26
CviAII	CATG	1 cut(s)	742
CviQI	GTAC	5 cut(s)	190, 262, 406, 675, 718
DdeI	CTNAG	2 cut(s)	395, 495
EaeI	YGGCCR	3 cut(s)	108, 425, 536
EagI	CGGCCG	2 cut(s)	108, 536
EciI	GGCGGA	1 cut(s)	126
EclXI	CGGCCG	2 cut(s)	108, 536
Eco24I	GRGCYC	2 cut(s)	117, 241
Eco47I	GGWCC	3 cut(s)	26, 59, 78
Eco52I	CGGCCG	2 cut(s)	108, 536
Eco88I	CYCGRG	1 cut(s)	450
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRI	GAATTC	2 cut(s)	251, 507
EcoRII	CCWGG	1 cut(s)	751
EcoT38I	GRGCYC	2 cut(s)	117, 241
FaeI	CATG	1 cut(s)	745
FaiI	YATR	3 cut(s)	572, 707, 743
FaqI	GGGAC	3 cut(s)	182, 435, 501
FatI	CATG	1 cut(s)	741
FauI	CCCGC	4 cut(s)	139, 159, 233, 340
FriOI	GRGCYC	2 cut(s)	117, 241
FspBI	CTAG	1 cut(s)	672
GlaI	GCGC	4 cut(s)	343, 381, 448, 558
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	5 cut(s)	110, 224, 239, 427, 538
HapII	CCGG	3 cut(s)	24, 89, 300
HgaI	GACGC	2 cut(s)	386, 570
HhaI	GCGC	4 cut(s)	344, 382, 449, 559
Hin1II	CATG	1 cut(s)	745
Hin6I	GCGC	4 cut(s)	342, 380, 447, 557
HinP1I	GCGC	4 cut(s)	342, 380, 447, 557
HinfI	GANTC	3 cut(s)	5, 152, 431
HpaII	CCGG	3 cut(s)	24, 89, 300
HphI	GGTGA	3 cut(s)	469, 490, 620
Hpy166II	GTNNAC	2 cut(s)	292, 585
Hpy188I	TCNGA	2 cut(s)	317, 389
Hpy188III	TCNNGA	2 cut(s)	196, 565
Hpy8I	GTNNAC	2 cut(s)	292, 585
Hpy99I	CGWCG	3 cut(s)	67, 380, 544
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	3 cut(s)	544, 652, 722
HpyCH4IV	ACGT	2 cut(s)	218, 243
HpyCH4V	TGCA	3 cut(s)	187, 231, 680
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 92, 131, 163, 341, 662, 665
HpyF3I	CTNAG	2 cut(s)	395, 495
HpySE526I	ACGT	2 cut(s)	218, 243
Hsp92II	CATG	1 cut(s)	745
HspAI	GCGC	4 cut(s)	342, 380, 447, 557
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	20, 139
LweI	GCATC	1 cut(s)	134
MabI	ACCWGGT	1 cut(s)	751
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	2 cut(s)	218, 243
MaeIII	GTNAC	2 cut(s)	544, 755
MbiI	CCGCTC	3 cut(s)	134, 214, 455
MboII	GAAGA	2 cut(s)	60, 292
MhlI	GDGCHC	2 cut(s)	117, 241
MluCI	AATT	3 cut(s)	251, 507, 726
MlyI	GAGTC	2 cut(s)	161, 440
MroNI	GCCGGC	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	228
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	3 cut(s)	24, 89, 300
MspR9I	CCNGG	2 cut(s)	89, 753
MvaI	CCWGG	1 cut(s)	753
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	7 cut(s)	89, 92, 131, 163, 341, 662, 665
NaeI	GCCGGC	1 cut(s)	301
NciI	CCSGG	1 cut(s)	89
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	1 cut(s)	745
NlaIV	GGNNCC	4 cut(s)	22, 60, 238, 239
NmeAIII	GCCGAG	2 cut(s)	136, 165
NmuCI	GTSAC	1 cut(s)	544
PaeR7I	CTCGAG	1 cut(s)	450
PdiI	GCCGGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	5
Pfl23II	CGTACG	1 cut(s)	405
PleI	GAGTC	2 cut(s)	160, 439
PpsI	GAGTC	2 cut(s)	160, 439
PshAI	GACNNNNGTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspLI	CGTACG	1 cut(s)	405
PspN4I	GGNNCC	4 cut(s)	22, 60, 238, 239
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	6 cut(s)	26, 59, 78, 223, 237, 238
PspXI	VCTCGAGB	1 cut(s)	450
PstI	CTGCAG	2 cut(s)	189, 233
RsaI	GTAC	5 cut(s)	191, 263, 407, 676, 719
RsaNI	GTAC	5 cut(s)	190, 262, 406, 675, 718
Rsr2I	CGGWCCG	1 cut(s)	26
RsrII	CGGWCCG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	258
Sau96I	GGNCC	6 cut(s)	26, 59, 78, 223, 237, 238
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	2 cut(s)	161, 440
ScrFI	CCNGG	2 cut(s)	89, 753
SduI	GDGCHC	2 cut(s)	117, 241
SexAI	ACCWGGT	1 cut(s)	751
SfaNI	GCATC	1 cut(s)	134
SfcI	CTRYAG	3 cut(s)	102, 185, 229
Sfr274I	CTCGAG	1 cut(s)	450
SinI	GGWCC	3 cut(s)	26, 59, 78
SlaI	CTCGAG	1 cut(s)	450
SmlI	CTYRAG	5 cut(s)	194, 257, 353, 450, 588
SmoI	CTYRAG	5 cut(s)	194, 257, 353, 450, 588
SpeI	ACTAGT	1 cut(s)	671
Sse9I	AATT	3 cut(s)	251, 507, 726
SspMI	CTAG	1 cut(s)	672
StyD4I	CCNGG	2 cut(s)	87, 751
TaaI	ACNGT	3 cut(s)	544, 652, 722
TaiI	ACGT	2 cut(s)	221, 246
TaqI	TCGA	5 cut(s)	249, 267, 375, 451, 724
TasI	AATT	3 cut(s)	251, 507, 726
TatI	WGTACW	2 cut(s)	674, 717
TauI	GCSGC	6 cut(s)	95, 110, 147, 166, 299, 404
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	3 cut(s)	238, 553, 559
TseFI	GTSAC	1 cut(s)	544
Tsp45I	GTSAC	1 cut(s)	544
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	3 cut(s)	238, 553, 559
Vha464I	CTTAAG	1 cut(s)	257
VpaK11BI	GGWCC	3 cut(s)	26, 59, 78
XapI	RAATTY	3 cut(s)	251, 507, 726
XhoI	CTCGAG	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	1 cut(s)	672
ZrmI	AGTACT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.