AT1G07210

Belongs to the bacterial ribosomal protein bS18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013090
Physical Location & Seq
Forward (+)
2215216 .. 2216982
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07210.1

Sequence Viewer

Length: 786 bp
ATGAGCATCGCTCGTTTCGCTACTCGGTCACTCAACAACGTAACTTTCCTTCGACCATTTCGTCCCATCGTCTCTAGAAGCCTCGCCACCAACGCCAACGAAGATCCAAACCAGAATCGATCTTCTTTTGACTCATCGGACAATTTGGATTCGTTGTTTGGCGATTACACTGGCAACGATGAGAAAAGCAATGATTTCTTCCAGCATCTTAGTAAAGCGGAGAAAGATAAGCGCGATTTCAATGGCTATAATAGATCAGGAGGGTCGAGATACTCCGGTGGTGGTTCAATGAGCAAAGACGAGACCTTCGATCCTTCATCTGATGGTGTTGATGGAAAATTGAAAGAAGCTGCACTAGCTTACAATATGGATGAAGGAGATGGCTTTAAGGAGTACTCTTTTAGGCCCGATTTCAACAACAGTTGGGGCATGAATAACTTCCCTAGGATGCAAAAACAGATGCAAAATCCTAGACAGAATAATAGCAAGTCTGAGGTAACTACTGAGGAAGTTCTGAAGAATGCTGATTTCAGGAATGTTAGGTTCCTTGCAAACTTCATCACTGAAGCTGGGATCATTATTAAGAGGAAGCAGACTGGCATTAGCGCAAAGGCTCAAAGAAAGATTGCTAGAGAGATCAAAACAGCCCGTGCATTTGGGCTGATGCCTTTCACAACAATGGGTACAAAGGCATTTCAGTTCGGGAAAACCATGGAGAACAGAGACCAAGATTTCGAGTATGAAGTGCTTGATGATGATGATGAGTTTGACGAGGGAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S18

Protein Analysis

261

Amino Acids

29.62

Weight (kDa)

5.33

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S18 PF01084 173 - 222 3.5e-17 Ribosomal protein S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07210
fragaria_vesca FvH4_3g38720
malus_domestica MD03G1068600.v1.1 MD03G1068700.v1.1 MD11G1073200.v1.1
prunus_persica Prupe.6G056500_v2.0.a1 Prupe.6G056500_v2.0.a1
pyrus_communis pycom11g06070
rosa_chinensis RchiOBHm_Chr5g0069871
rosa_laevigata RLG00000036104
rosa_multiflora Rmu_sc0000738.1_g000001
rosa_roxburghii Rroxscaffold_1G00011180
rosa_rugosa Rorug05G0400400
rosa_samantha Rh5AG457500 Rh5BG476300 Rh5CG500100 Rh5DG488100
rosa_wichuraiana Rw5G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 60
AccII CGCG 1 cut(s) 234
AciI CCGC 1 cut(s) 218
AclWI GGATC 3 cut(s) 98, 305, 581
AcuI CTGAAG 2 cut(s) 536, 585
AfaI GTAC 2 cut(s) 395, 685
AgsI TTSAA 4 cut(s) 241, 288, 343, 415
AluBI AGCT 3 cut(s) 350, 359, 569
AluI AGCT 3 cut(s) 350, 359, 569
Alw26I GTCTC 3 cut(s) 76, 296, 717
AlwI GGATC 3 cut(s) 98, 305, 581
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 1 cut(s) 350
ArsI GACNNNNNNTTYG 4 cut(s) 290, 322, 716, 748
Asp700I GAANNNNTTC 1 cut(s) 437
AspA2I CCTAGG 1 cut(s) 443
AspLEI GCGC 2 cut(s) 234, 608
AspS9I GGNCC 1 cut(s) 405
AvrII CCTAGG 1 cut(s) 443
BaeI ACNNNNGTAYC 2 cut(s) 262, 295
BarI GAAGNNNNNNTAC 2 cut(s) 33, 65
BbvI GCAGC 1 cut(s) 337
BccI CCATC 4 cut(s) 74, 317, 326, 374
BcgI CGANNNNNNTGC 1 cut(s) 761
BcoDI GTCTC 3 cut(s) 76, 296, 717
BfaI CTAG 5 cut(s) 75, 356, 444, 471, 630
BisI GCNGC 1 cut(s) 351
BlnI CCTAGG 1 cut(s) 443
BlsI GCNGC 1 cut(s) 352
BmcAI AGTACT 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 545
BmsI GCATC 5 cut(s) 15, 214, 438, 450, 654
BplI GAGNNNNNCTC 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 118
BsaI GGTCTC 2 cut(s) 296, 717
BsaJI CCNNGG 2 cut(s) 443, 711
BsaWI WCCGGW 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 175, 601
Bse3DI GCAATG 1 cut(s) 196
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 443, 711
BseGI GGATG 2 cut(s) 376, 453
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 483, 495
BseNI ACTGG 2 cut(s) 175, 601
BseXI GCAGC 1 cut(s) 337
BseYI CCCAGC 1 cut(s) 569
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 1 cut(s) 406
BshVI ATCGAT 1 cut(s) 118
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 48
BsmAI GTCTC 3 cut(s) 76, 296, 717
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 1 cut(s) 406
Bso31I GGTCTC 2 cut(s) 296, 717
Bsp143I GATC 6 cut(s) 103, 119, 254, 310, 573, 636
Bsp19I CCATGG 1 cut(s) 711
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 2 cut(s) 484, 496
BspDI ATCGAT 1 cut(s) 118
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 545
BspPI GGATC 3 cut(s) 98, 305, 581
BspTNI GGTCTC 2 cut(s) 296, 717
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 2 cut(s) 175, 601
BssECI CCNNGG 2 cut(s) 443, 711
BssMI GATC 6 cut(s) 103, 119, 254, 310, 573, 636
BssT1I CCWWGG 2 cut(s) 443, 711
Bst4CI ACNGT 1 cut(s) 422
BstDEI CTNAG 3 cut(s) 209, 492, 504
BstDSI CCRYGG 1 cut(s) 711
BstF5I GGATG 2 cut(s) 376, 453
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 2 cut(s) 234, 608
BstKTI GATC 6 cut(s) 106, 122, 257, 313, 576, 639
BstMAI GTCTC 3 cut(s) 76, 296, 717
BstMBI GATC 6 cut(s) 103, 119, 254, 310, 573, 636
BstMWI GCNNNNNNNGC 3 cut(s) 17, 92, 356
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
Bsu15I ATCGAT 1 cut(s) 118
BsuRI GGCC 1 cut(s) 406
BsuTUI ATCGAT 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 2 cut(s) 376, 453
BtsIMutI CAGTG 2 cut(s) 168, 561
CfoI GCGC 2 cut(s) 234, 608
Cfr13I GGNCC 1 cut(s) 405
ClaI ATCGAT 1 cut(s) 118
Csp6I GTAC 2 cut(s) 394, 684
CviAII CATG 2 cut(s) 430, 712
CviQI GTAC 2 cut(s) 394, 684
DdeI CTNAG 3 cut(s) 209, 492, 504
DpnI GATC 6 cut(s) 105, 121, 256, 312, 575, 638
DpnII GATC 6 cut(s) 103, 119, 254, 310, 573, 636
DrdI GACNNNNNNGTC 1 cut(s) 60
DseDI GACNNNNNNGTC 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 443, 711
Eco31I GGTCTC 2 cut(s) 296, 717
Eco57I CTGAAG 2 cut(s) 536, 585
EcoT14I CCWWGG 2 cut(s) 443, 711
ErhI CCWWGG 2 cut(s) 443, 711
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 2 cut(s) 433, 715
FaiI YATR 5 cut(s) 249, 368, 431, 713, 741
FaqI GGGAC 1 cut(s) 48
FatI CATG 2 cut(s) 429, 711
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 2 cut(s) 383, 460
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 5 cut(s) 75, 356, 444, 471, 630
GlaI GCGC 2 cut(s) 233, 607
GluI GCNGC 1 cut(s) 351
GsaI CCCAGC 1 cut(s) 573
HaeIII GGCC 1 cut(s) 406
HapII CCGG 1 cut(s) 276
HhaI GCGC 2 cut(s) 234, 608
Hin1II CATG 2 cut(s) 433, 715
Hin6I GCGC 2 cut(s) 232, 606
HinP1I GCGC 2 cut(s) 232, 606
HinfI GANTC 3 cut(s) 115, 131, 149
HpaII CCGG 1 cut(s) 276
Hpy188I TCNGA 4 cut(s) 139, 322, 493, 516
Hpy188III TCNNGA 5 cut(s) 75, 258, 267, 532, 703
HpyAV CCTTC 4 cut(s) 59, 316, 324, 368
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 5 cut(s) 353, 451, 463, 551, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 92, 356
HpyF3I CTNAG 3 cut(s) 209, 492, 504
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 433, 715
HspAI GCGC 2 cut(s) 232, 606
Kzo9I GATC 6 cut(s) 103, 119, 254, 310, 573, 636
LpnPI CCDG 8 cut(s) 125, 156, 215, 243, 289, 517, 555, 582
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 5 cut(s) 15, 214, 438, 450, 654
MaeI CTAG 5 cut(s) 75, 356, 444, 471, 630
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 27, 40, 496
MalI GATC 6 cut(s) 105, 121, 256, 312, 575, 638
MboI GATC 6 cut(s) 103, 119, 254, 310, 573, 636
MboII GAAGA 4 cut(s) 113, 114, 190, 529
MflI RGATCY 1 cut(s) 103
MluCI AATT 2 cut(s) 142, 338
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 6 cut(s) 92, 254, 487, 499, 579, 766
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 2 cut(s) 387, 582
MslI CAYNNNNRTG 1 cut(s) 677
MspI CCGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 526
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 17, 92, 356
NcoI CCATGG 1 cut(s) 711
NdeII GATC 6 cut(s) 103, 119, 254, 310, 573, 636
NlaIII CATG 2 cut(s) 433, 715
NlaIV GGNNCC 1 cut(s) 545
NmuCI GTSAC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 2 cut(s) 58, 306
PctI GAATGC 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 115, 149
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 569
PspN4I GGNNCC 1 cut(s) 545
PspPI GGNCC 1 cut(s) 405
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 2 cut(s) 395, 685
RsaNI GTAC 2 cut(s) 394, 684
RseI CAYNNNNRTG 1 cut(s) 677
SaqAI TTAA 2 cut(s) 387, 582
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 6 cut(s) 103, 119, 254, 310, 573, 636
Sau96I GGNCC 1 cut(s) 405
ScaI AGTACT 1 cut(s) 395
SchI GAGTC 1 cut(s) 125
SetI ASST 7 cut(s) 42, 308, 352, 361, 498, 545, 571
SfaNI GCATC 5 cut(s) 15, 214, 438, 450, 654
SmiMI CAYNNNNRTG 1 cut(s) 677
Sse9I AATT 2 cut(s) 142, 338
SsiI CCGC 1 cut(s) 218
SspMI CTAG 5 cut(s) 75, 356, 444, 471, 630
StyI CCWWGG 2 cut(s) 443, 711
TaaI ACNGT 1 cut(s) 422
TaiI ACGT 1 cut(s) 42
TaqI TCGA 5 cut(s) 52, 118, 266, 309, 735
TaqII GACCGA 1 cut(s) 15
TasI AATT 2 cut(s) 142, 338
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 2 cut(s) 115, 149
Tru1I TTAA 2 cut(s) 387, 582
Tru9I TTAA 2 cut(s) 387, 582
TscAI CASTG 2 cut(s) 175, 568
TseFI GTSAC 1 cut(s) 27
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 5 cut(s) 306, 387, 446, 547, 756
TspRI CASTG 2 cut(s) 175, 568
XbaI TCTAGA 1 cut(s) 74
XmaJI CCTAGG 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 5 cut(s) 75, 356, 444, 471, 630
ZrmI AGTACT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.