Rw5G042710

Belongs to the bacterial ribosomal protein bS18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0013090
Physical Location & Seq
Reverse (-)
74679969 .. 74683304
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G042710.1

Sequence Viewer

Length: 813 bp
ATGAAAGTTTTTCGATTTGCCCTGCGATCTCTCAATGATGGTGTATCACGCCGGTTTTATCAGCCGCACAGTGTGAGAACTCTTTCCACATATGTACCCCCAGGTGGTAGAATGGATGATAAGCAGAACTCTAATTCCTTTGAATCTGCTGATGTTTTTGAGCCGAGGATTTTCAGTGAAACTTCTGAAGGAAATTCCAAAACAGATACCTTTTTTGCTAATCTTGAGAGGCTCAGAAAGACGACTCGTGATGGATATGCTTCAAATCCGCCTGGAGGAAATGGAAGTGGTTCCCATGTACTCGATGGCTTAGATGAAAGTTTTAACACATTGTCAGATGGAATGGATGGAAAATTAAAGAGAGCAGCCACGGACATTCAATATGATATCGAGGAAGTTGATACAGATGGTTATACCTTCAGACCAGATATGAGATATCAACTGGGAGGGACTTATGATGTTAAAGATCTTGATCTTACTAGGCCTGGAGTTCATAAACCTCCCAGAAAGATTGATTTTGAAGTAACTACAAAGGAGGTTCTTCAAAAAGCTGATTTCAGGAATGTGAGATTCCTTGCAAATTTCATAACTGAGGCTGGAGTTATTATCAAAAGAAGCAAGACTAAGATTAGTGCCAAGGCCCAGAGAAAGGTTGCGAGAGAAATTAAGACAGCTCGAGCTTTTGGTTTAATGCCTTTCACAACGATGGGGACAAAATCATTTGTTTTTGGAAAGACTATGGAAAATCTTGGTGAAGACTTCGAATACGAAAGTTATGATAACCCCACAGCTGATGATGGTCTGGGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S18

Protein Analysis

270

Amino Acids

30.39

Weight (kDa)

6.87

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S18 PF01084 183 - 231 1.3e-15 Ribosomal protein S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07210
fragaria_vesca FvH4_3g38720
malus_domestica MD03G1068600.v1.1 MD03G1068700.v1.1 MD11G1073200.v1.1
prunus_persica Prupe.6G056500_v2.0.a1 Prupe.6G056500_v2.0.a1
pyrus_communis pycom11g06070
rosa_chinensis RchiOBHm_Chr5g0069871
rosa_laevigata RLG00000036104
rosa_multiflora Rmu_sc0000738.1_g000001
rosa_roxburghii Rroxscaffold_1G00011180
rosa_rugosa Rorug05G0400400
rosa_samantha Rh5AG457500 Rh5BG476300 Rh5CG500100 Rh5DG488100
rosa_wichuraiana Rw5G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 65, 269
AcsI RAATTY 2 cut(s) 193, 580
AcuI CTGAAG 2 cut(s) 207, 403
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 2 cut(s) 96, 300
AfiI CCNNNNNNNGG 3 cut(s) 104, 275, 649
AgsI TTSAA 5 cut(s) 143, 264, 380, 521, 545
AjnI CCWGG 3 cut(s) 100, 271, 484
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 4 cut(s) 551, 674, 680, 791
AluI AGCT 4 cut(s) 551, 674, 680, 791
Ama87I CYCGRG 1 cut(s) 675
AoxI GGCC 2 cut(s) 482, 639
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 2 cut(s) 193, 580
Asp700I GAANNNNTTC 2 cut(s) 82, 289
AspS9I GGNCC 1 cut(s) 640
AsuHPI GGTGA 1 cut(s) 764
AsuII TTCGAA 1 cut(s) 762
AvaI CYCGRG 1 cut(s) 675
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 762
BbvI GCAGC 1 cut(s) 377
BccI CCATC 8 cut(s) 32, 245, 299, 332, 341, 401, 700, 791
BciT130I CCWGG 3 cut(s) 102, 273, 486
BfaI CTAG 1 cut(s) 480
BglII AGATCT 1 cut(s) 466
BisI GCNGC 2 cut(s) 65, 366
BlsI GCNGC 2 cut(s) 66, 367
Bme1390I CCNGG 3 cut(s) 102, 273, 486
BmeT110I CYCGRG 1 cut(s) 675
BmgT120I GGNCC 1 cut(s) 640
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 3 cut(s) 102, 273, 486
BmrI ACTGGG 1 cut(s) 452
BmuI ACTGGG 1 cut(s) 452
BpiI GAAGAC 1 cut(s) 762
BpmI CTGGAG 3 cut(s) 294, 507, 618
Bpu14I TTCGAA 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 471
BsaJI CCNNGG 4 cut(s) 100, 164, 369, 636
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 275, 649
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 3 cut(s) 102, 273, 486
BseDI CCNNGG 4 cut(s) 100, 164, 369, 636
BseGI GGATG 2 cut(s) 121, 352
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 3 cut(s) 104, 275, 649
BseMII CTCAG 2 cut(s) 247, 582
BseNI ACTGG 1 cut(s) 447
BseXI GCAGC 1 cut(s) 377
BshFI GGCC 2 cut(s) 484, 641
BsiHKCI CYCGRG 1 cut(s) 675
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 2 cut(s) 463, 724
BslI CCNNNNNNNGG 3 cut(s) 104, 275, 649
BsmFI GGGAC 2 cut(s) 463, 724
BsnI GGCC 2 cut(s) 484, 641
BsoBI CYCGRG 1 cut(s) 675
Bsp119I TTCGAA 1 cut(s) 762
Bsp143I GATC 3 cut(s) 26, 466, 472
BspACI CCGC 2 cut(s) 65, 269
BspANI GGCC 2 cut(s) 484, 641
BspCNI CTCAG 2 cut(s) 246, 583
BspLI GGNNCC 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 762
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 1 cut(s) 447
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 4 cut(s) 100, 164, 369, 636
BssMI GATC 3 cut(s) 26, 466, 472
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 636
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 3 cut(s) 102, 273, 486
Bst4CI ACNGT 1 cut(s) 71
BstBI TTCGAA 1 cut(s) 762
BstDEI CTNAG 4 cut(s) 233, 310, 591, 624
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 121, 352
BstKTI GATC 3 cut(s) 29, 469, 475
BstMBI GATC 3 cut(s) 26, 466, 472
BstNI CCWGG 3 cut(s) 102, 273, 486
BstSCI CCNGG 3 cut(s) 100, 271, 484
BstV1I GCAGC 1 cut(s) 377
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 2 cut(s) 484, 641
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 2 cut(s) 121, 352
BtsIMutI CAGTG 2 cut(s) 76, 181
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 640
Csp6I GTAC 2 cut(s) 95, 299
CviAII CATG 1 cut(s) 296
CviQI GTAC 2 cut(s) 95, 299
DdeI CTNAG 4 cut(s) 233, 310, 591, 624
DpnI GATC 3 cut(s) 28, 468, 474
DpnII GATC 3 cut(s) 26, 466, 472
DraIII CACNNNGTG 1 cut(s) 73
EciI GGCGGA 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 636
Eco147I AGGCCT 1 cut(s) 484
Eco32I GATATC 2 cut(s) 388, 437
Eco57I CTGAAG 2 cut(s) 207, 403
Eco88I CYCGRG 1 cut(s) 675
EcoRII CCWGG 3 cut(s) 100, 271, 484
EcoRV GATATC 2 cut(s) 388, 437
EcoT14I CCWWGG 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 1 cut(s) 299
FaqI GGGAC 2 cut(s) 463, 724
FatI CATG 1 cut(s) 295
FauNDI CATATG 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 65, 366
FokI GGATG 2 cut(s) 128, 359
Fsp4HI GCNGC 2 cut(s) 65, 366
FspBI CTAG 1 cut(s) 480
GluI GCNGC 2 cut(s) 65, 366
GsuI CTGGAG 3 cut(s) 294, 507, 618
HaeIII GGCC 2 cut(s) 484, 641
HapII CCGG 1 cut(s) 52
Hin1II CATG 1 cut(s) 299
HinfI GANTC 4 cut(s) 143, 244, 570, 807
HpaII CCGG 1 cut(s) 52
HphI GGTGA 1 cut(s) 764
Hpy188I TCNGA 4 cut(s) 187, 236, 337, 422
Hpy188III TCNNGA 4 cut(s) 224, 248, 470, 559
HpyAV CCTTC 2 cut(s) 182, 427
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 578
HpyF3I CTNAG 4 cut(s) 233, 310, 591, 624
Hsp92II CATG 1 cut(s) 299
Kzo9I GATC 3 cut(s) 26, 466, 472
Lsp1109I GCAGC 1 cut(s) 377
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 523
MalI GATC 3 cut(s) 28, 468, 474
MboI GATC 3 cut(s) 26, 466, 472
MboII GAAGA 2 cut(s) 533, 767
MflI RGATCY 1 cut(s) 466
MluCI AATT 5 cut(s) 133, 193, 353, 580, 663
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 8 cut(s) 159, 222, 269, 385, 440, 510, 529, 586
MroXI GAANNNNTTC 2 cut(s) 82, 289
MseI TTAA 5 cut(s) 324, 356, 462, 666, 689
MslI CAYNNNNRTG 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 3 cut(s) 102, 273, 486
MvaI CCWGG 3 cut(s) 102, 273, 486
NdeI CATATG 1 cut(s) 91
NdeII GATC 3 cut(s) 26, 466, 472
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 1 cut(s) 292
NmeAIII GCCGAG 1 cut(s) 189
NspV TTCGAA 1 cut(s) 762
PaeR7I CTCGAG 1 cut(s) 675
PceI AGGCCT 1 cut(s) 484
PdmI GAANNNNTTC 2 cut(s) 82, 289
PfeI GAWTC 3 cut(s) 143, 570, 807
PkrI GCNGC 2 cut(s) 66, 367
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp6I CCWGG 3 cut(s) 100, 271, 484
PspGI CCWGG 3 cut(s) 100, 271, 484
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 640
PspXI VCTCGAGB 1 cut(s) 675
PsuI RGATCY 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 2 cut(s) 96, 300
RsaNI GTAC 2 cut(s) 95, 299
RseI CAYNNNNRTG 1 cut(s) 704
SaqAI TTAA 5 cut(s) 324, 356, 462, 666, 689
SatI GCNGC 2 cut(s) 65, 366
Sau3AI GATC 3 cut(s) 26, 466, 472
Sau96I GGNCC 1 cut(s) 640
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 3 cut(s) 102, 273, 486
Sfr274I CTCGAG 1 cut(s) 675
SfuI TTCGAA 1 cut(s) 762
SlaI CTCGAG 1 cut(s) 675
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 2 cut(s) 224, 675
SmoI CTYRAG 2 cut(s) 224, 675
Sse9I AATT 5 cut(s) 133, 193, 353, 580, 663
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 2 cut(s) 65, 269
SspMI CTAG 1 cut(s) 480
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 3 cut(s) 100, 271, 484
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 5 cut(s) 13, 303, 390, 676, 762
TasI AATT 5 cut(s) 133, 193, 353, 580, 663
TatI WGTACW 1 cut(s) 298
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 3 cut(s) 143, 570, 807
Tru1I TTAA 5 cut(s) 324, 356, 462, 666, 689
Tru9I TTAA 5 cut(s) 324, 356, 462, 666, 689
TscAI CASTG 2 cut(s) 76, 181
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 4 cut(s) 17, 330, 482, 574
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 76, 181
XapI RAATTY 2 cut(s) 193, 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 675
XmnI GAANNNNTTC 2 cut(s) 82, 289
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.