RLG00000036104

Belongs to the bacterial ribosomal protein bS18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013090
Physical Location & Seq
Reverse (-)
75766952 .. 75769551
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036104

Sequence Viewer

Length: 906 bp
ATGGTTGAAGAAGCCCTAAGAAAACAATACCCTCTCTCTCCCCCCTCCATCTCTGCCTCTGTAACTCTTTCGTGCTCTTCGGTCTCTCCTGAAATGAAAGTTCTTCGATTTGCCCTGCGATCTCTCAATGATGGTGTATCACGCCGGTTTTATCAGCCGCAGAGTGTGAGAACTCTTTCCACATATGTACCCCCAGGTGGTAGAATGGATGAGAAGCAGAACTCTAATTCCTTTGAATCTGATGTTGATTTTGCGGCAAAGATTTTCGGTAAAACTTCTGAAGGAAGTTCCCAAACAAATTCCTTTTTTGCTAAACTTGAAAGGCTCAAAAAGACGCCTCATGATGGATATGCTTCAAATCCGCCTGGAGGAAATGGAAGTGGTTCCCACGTACTCGACGACTTAGATGAAAGTTTTAACACATTGTCAGATGGAATGGATGGAAAATTAAAGAGAGCAGCCACGGACATTCAATATGATTTCGAGGAAGTTGATACAGATGGTTATACCTTCAGACCAGATATGAGATATCAACTGGGAGGGACTTATGATGTTAAAGATCTTGATCTTACTAGGCCTGGAGTTCATAAACCTCCCAGAAAGATTGATTTTGAAGTAACTACAAAGGAAGTTCTTCGAAAAGCTGATTTCAGGAATGTGAGATTCCTTGCAAATTTCATAACTGAGGCTGGAGTTATTATCAAAAGAAGCAAGACTAAGATTAGCGCCAAGGCCCAGAGAAAGGTTGCAAGAGAAATTAAGACAGCTCGAGCTTTCGGTTTAATGCCTTTCACAACGATGGGGACAAAATCATTTGTTTTTGGAAAGACTATGGAAAATCTTGGTGAAGACTTTGAATATGAAAGTTATGATAACCCTACAGCTGATGACAGTCTGGGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S18

Protein Analysis

302

Amino Acids

33.61

Weight (kDa)

7.73

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S18 PF01084 214 - 262 1.8e-15 Ribosomal protein S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07210
fragaria_vesca FvH4_3g38720
malus_domestica MD03G1068600.v1.1 MD03G1068700.v1.1 MD11G1073200.v1.1
prunus_persica Prupe.6G056500_v2.0.a1 Prupe.6G056500_v2.0.a1
pyrus_communis pycom11g06070
rosa_chinensis RchiOBHm_Chr5g0069871
rosa_laevigata RLG00000036104
rosa_multiflora Rmu_sc0000738.1_g000001
rosa_roxburghii Rroxscaffold_1G00011180
rosa_rugosa Rorug05G0400400
rosa_samantha Rh5AG457500 Rh5BG476300 Rh5CG500100 Rh5DG488100
rosa_wichuraiana Rw5G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 158, 254, 362
AcsI RAATTY 2 cut(s) 298, 673
AcuI CTGAAG 2 cut(s) 300, 496
AcyI GRCGYC 1 cut(s) 335
AfaI GTAC 2 cut(s) 189, 393
AfiI CCNNNNNNNGG 4 cut(s) 197, 344, 368, 742
AgsI TTSAA 7 cut(s) 8, 236, 320, 357, 473, 614, 857
AjnI CCWGG 3 cut(s) 193, 364, 577
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 4 cut(s) 644, 767, 773, 884
AluI AGCT 4 cut(s) 644, 767, 773, 884
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 768
AoxI GGCC 2 cut(s) 575, 732
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 2 cut(s) 298, 673
Asp700I GAANNNNTTC 3 cut(s) 175, 382, 633
AspLEI GCGC 1 cut(s) 728
AspS9I GGNCC 1 cut(s) 733
AsuHPI GGTGA 1 cut(s) 857
AsuII TTCGAA 1 cut(s) 637
AvaI CYCGRG 1 cut(s) 768
BaeI ACNNNNGTAYC 2 cut(s) 171, 204
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 470
BccI CCATC 7 cut(s) 56, 125, 338, 425, 434, 494, 793
BciT130I CCWGG 3 cut(s) 195, 366, 579
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 1 cut(s) 879
BfoI RGCGCY 1 cut(s) 729
BglII AGATCT 1 cut(s) 559
BisI GCNGC 3 cut(s) 158, 255, 459
BlsI GCNGC 3 cut(s) 159, 256, 460
Bme1390I CCNGG 3 cut(s) 195, 366, 579
BmeT110I CYCGRG 1 cut(s) 768
BmgT120I GGNCC 1 cut(s) 733
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 3 cut(s) 195, 366, 579
BmrI ACTGGG 1 cut(s) 545
BmuI ACTGGG 1 cut(s) 545
BpiI GAAGAC 1 cut(s) 855
BpmI CTGGAG 3 cut(s) 387, 600, 711
Bpu14I TTCGAA 1 cut(s) 637
BsaAI YACGTR 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 564
BsaHI GRCGYC 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 3 cut(s) 193, 462, 729
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 344, 368, 742
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 540
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 3 cut(s) 195, 366, 579
BseDI CCNNGG 3 cut(s) 193, 462, 729
BseGI GGATG 2 cut(s) 214, 445
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 4 cut(s) 197, 344, 368, 742
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 1 cut(s) 540
BseXI GCAGC 1 cut(s) 470
BshFI GGCC 2 cut(s) 577, 734
BsiHKAI GWGCWC 1 cut(s) 77
BsiHKCI CYCGRG 1 cut(s) 768
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 556, 817
BslI CCNNNNNNNGG 4 cut(s) 197, 344, 368, 742
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 2 cut(s) 556, 817
BsnI GGCC 2 cut(s) 577, 734
Bso31I GGTCTC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 768
Bsp119I TTCGAA 1 cut(s) 637
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 119, 559, 565
BspACI CCGC 3 cut(s) 158, 254, 362
BspANI GGCC 2 cut(s) 577, 734
BspCNI CTCAG 1 cut(s) 676
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 1 cut(s) 540
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 3 cut(s) 193, 462, 729
BssMI GATC 3 cut(s) 119, 559, 565
BssNI GRCGYC 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 729
Bst2UI CCWGG 3 cut(s) 195, 366, 579
Bst4CI ACNGT 1 cut(s) 893
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 335
BstBAI YACGTR 1 cut(s) 391
BstBI TTCGAA 1 cut(s) 637
BstDEI CTNAG 4 cut(s) 17, 403, 684, 717
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 214, 445
BstH2I RGCGCY 1 cut(s) 729
BstHHI GCGC 1 cut(s) 728
BstKTI GATC 3 cut(s) 122, 562, 568
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 3 cut(s) 119, 559, 565
BstNI CCWGG 3 cut(s) 195, 366, 579
BstSCI CCNGG 3 cut(s) 193, 364, 577
BstSFI CTRYAG 1 cut(s) 879
BstV1I GCAGC 1 cut(s) 470
BstV2I GAAGAC 1 cut(s) 855
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BsuRI GGCC 2 cut(s) 577, 734
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 2 cut(s) 214, 445
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 728
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 733
CseI GACGC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 188, 392
CviAII CATG 1 cut(s) 341
CviQI GTAC 2 cut(s) 188, 392
DdeI CTNAG 4 cut(s) 17, 403, 684, 717
DpnI GATC 3 cut(s) 121, 561, 567
DpnII GATC 3 cut(s) 119, 559, 565
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 729
Eco147I AGGCCT 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 530
Eco57I CTGAAG 2 cut(s) 300, 496
Eco88I CYCGRG 1 cut(s) 768
EcoRII CCWGG 3 cut(s) 193, 364, 577
EcoRV GATATC 1 cut(s) 530
EcoT14I CCWWGG 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 1 cut(s) 344
FaqI GGGAC 2 cut(s) 556, 817
FatI CATG 1 cut(s) 340
FauNDI CATATG 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 158, 255, 459
FokI GGATG 2 cut(s) 221, 452
Fsp4HI GCNGC 3 cut(s) 158, 255, 459
FspBI CTAG 1 cut(s) 573
GlaI GCGC 1 cut(s) 727
GluI GCNGC 3 cut(s) 158, 255, 459
GsuI CTGGAG 3 cut(s) 387, 600, 711
HaeII RGCGCY 1 cut(s) 729
HaeIII GGCC 2 cut(s) 577, 734
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 343
HhaI GCGC 1 cut(s) 728
Hin1I GRCGYC 1 cut(s) 335
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 1 cut(s) 726
HinP1I GCGC 1 cut(s) 726
HinfI GANTC 3 cut(s) 236, 663, 900
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 857
Hpy188I TCNGA 4 cut(s) 241, 280, 430, 515
Hpy188III TCNNGA 4 cut(s) 89, 341, 563, 652
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 2 cut(s) 275, 520
HpyCH4III ACNGT 1 cut(s) 893
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 2 cut(s) 671, 749
HpyF3I CTNAG 4 cut(s) 17, 403, 684, 717
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 335
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 1 cut(s) 726
Kzo9I GATC 3 cut(s) 119, 559, 565
LguI GCTCTTC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 470
MaeI CTAG 1 cut(s) 573
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 61, 616
MalI GATC 3 cut(s) 121, 561, 567
MboI GATC 3 cut(s) 119, 559, 565
MboII GAAGA 5 cut(s) 20, 69, 95, 626, 860
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 5 cut(s) 226, 298, 446, 673, 756
MnlI CCTC 9 cut(s) 42, 55, 67, 348, 362, 478, 533, 603, 679
MroXI GAANNNNTTC 3 cut(s) 175, 382, 633
MseI TTAA 5 cut(s) 417, 449, 555, 759, 782
MslI CAYNNNNRTG 1 cut(s) 797
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 3 cut(s) 195, 366, 579
MvaI CCWGG 3 cut(s) 195, 366, 579
NdeI CATATG 1 cut(s) 184
NdeII GATC 3 cut(s) 119, 559, 565
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 385
NspV TTCGAA 1 cut(s) 637
PaeR7I CTCGAG 1 cut(s) 768
PagI TCATGA 1 cut(s) 340
PceI AGGCCT 1 cut(s) 577
PciSI GCTCTTC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PdmI GAANNNNTTC 3 cut(s) 175, 382, 633
PfeI GAWTC 3 cut(s) 236, 663, 900
PkrI GCNGC 3 cut(s) 159, 256, 460
Ppu21I YACGTR 1 cut(s) 391
Psp6I CCWGG 3 cut(s) 193, 364, 577
PspGI CCWGG 3 cut(s) 193, 364, 577
PspN4I GGNNCC 1 cut(s) 385
PspPI GGNCC 1 cut(s) 733
PspXI VCTCGAGB 1 cut(s) 768
PsuI RGATCY 1 cut(s) 559
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 2 cut(s) 189, 393
RsaNI GTAC 2 cut(s) 188, 392
RseI CAYNNNNRTG 1 cut(s) 797
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 5 cut(s) 417, 449, 555, 759, 782
SatI GCNGC 3 cut(s) 158, 255, 459
Sau3AI GATC 3 cut(s) 119, 559, 565
Sau96I GGNCC 1 cut(s) 733
ScrFI CCNGG 3 cut(s) 195, 366, 579
SduI GDGCHC 1 cut(s) 77
SetI ASST 9 cut(s) 199, 393, 512, 595, 646, 747, 769, 775, 886
SfcI CTRYAG 1 cut(s) 879
Sfr274I CTCGAG 1 cut(s) 768
SfuI TTCGAA 1 cut(s) 637
SlaI CTCGAG 1 cut(s) 768
SmiMI CAYNNNNRTG 1 cut(s) 797
SmlI CTYRAG 1 cut(s) 768
SmoI CTYRAG 1 cut(s) 768
Sse9I AATT 5 cut(s) 226, 298, 446, 673, 756
SseBI AGGCCT 1 cut(s) 577
SsiI CCGC 3 cut(s) 158, 254, 362
SspMI CTAG 1 cut(s) 573
StuI AGGCCT 1 cut(s) 577
StyD4I CCNGG 3 cut(s) 193, 364, 577
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 1 cut(s) 893
TaiI ACGT 1 cut(s) 393
TaqI TCGA 5 cut(s) 106, 396, 483, 637, 769
TaqII GACCGA 1 cut(s) 70
TasI AATT 5 cut(s) 226, 298, 446, 673, 756
TauI GCSGC 2 cut(s) 160, 257
TfiI GAWTC 3 cut(s) 236, 663, 900
Tru1I TTAA 5 cut(s) 417, 449, 555, 759, 782
Tru9I TTAA 5 cut(s) 417, 449, 555, 759, 782
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 5 cut(s) 110, 423, 575, 667, 876
TspGWI ACGGA 1 cut(s) 479
XapI RAATTY 2 cut(s) 298, 673
XhoI CTCGAG 1 cut(s) 768
XmnI GAANNNNTTC 3 cut(s) 175, 382, 633
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.