MD11G1073200.v1.1

Belongs to the bacterial ribosomal protein bS18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013090
Physical Location & Seq
Forward (+)
6217266 .. 6219794
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1073200.v1.1.491

Sequence Viewer

Length: 810 bp
ATGAAAATTGTTCGGTTTGCTTTGCGATCCTTCAATGACAGTCGCCGATTTCATCAGCCACATGTGAGAACTCTGTCTACATACATGACATCAGGTGGAGGAATGGATGATAAGAAAATTTCTAATTCCTTTGAATCTTCTGATGATTTCGAGCGGCGCATCTTCAGTGAAACTTCTGGGGGTAACTTTTTCTCAAAGCTAGATAGGCTTGGGAAGGCTCATGATGGACATGTTTCAGATCTTGGTGGAGGATTTGGAATTGGAAGTGGAAGTGGTTCCCATGTACTTGATGGCTTAGATGAGAGTTTAAACACATTATCTGATGGAATGGATGGAAAATTAGAGAAAGCAGCCACCTACTTTGAGTATGATGAGGAAGAAGTAGACAAAGATGATTATTCTTTCAGACCAGATATGACTTTTAAGCCAGGAATGACTTATGAAAAAAAAGATCTGGATCTTACTAAGCCAGGAGTAAGTAAACTTCCCCGTAGGTATGAGTTTGAAGTAACTACAAAGGAAGTTCTTAGAAAAGCTGATTTCAGGAATGTGAGATTCCTTGCGAATTTCTTAACAGAGGCTGGAATTCTTATCAAAAGAAGCAAGACTGGAATTAGCGCCAAAGCTCAGAGGAAGGTCGCCAGGGAAATCAAAACAGCTCGAGCTTTTGGTTTAATGCCTTTCACGACAATGGGGACAAAATCATTCGTTTTTGGGAAAACTATGGAGAGTCTGGATGAAGATTATGAGTACGAAAGTTATGATAACCATATGGGTGATGCCGATGAAAGAGACCCTCTGGCACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S18

Protein Analysis

270

Amino Acids

30.35

Weight (kDa)

5.78

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S18 PF01084 178 - 226 3.8e-15 Ribosomal protein S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07210
fragaria_vesca FvH4_3g38720
malus_domestica MD03G1068600.v1.1 MD03G1068700.v1.1 MD11G1073200.v1.1
prunus_persica Prupe.6G056500_v2.0.a1 Prupe.6G056500_v2.0.a1
pyrus_communis pycom11g06070
rosa_chinensis RchiOBHm_Chr5g0069871
rosa_laevigata RLG00000036104
rosa_multiflora Rmu_sc0000738.1_g000001
rosa_roxburghii Rroxscaffold_1G00011180
rosa_rugosa Rorug05G0400400
rosa_samantha Rh5AG457500 Rh5BG476300 Rh5CG500100 Rh5DG488100
rosa_wichuraiana Rw5G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 802
AccBSI CCGCTC 1 cut(s) 154
AccI GTMKAC 2 cut(s) 77, 384
AciI CCGC 1 cut(s) 154
AclWI GGATC 2 cut(s) 21, 465
AcsI RAATTY 3 cut(s) 117, 565, 585
AcuI CTGAAG 1 cut(s) 148
AfaI GTAC 2 cut(s) 285, 752
AflIII ACRYGT 2 cut(s) 61, 229
AgsI TTSAA 3 cut(s) 34, 134, 506
AjnI CCWGG 3 cut(s) 427, 469, 641
AluBI AGCT 5 cut(s) 199, 536, 626, 659, 665
AluI AGCT 5 cut(s) 199, 536, 626, 659, 665
Alw26I GTCTC 1 cut(s) 786
AlwI GGATC 2 cut(s) 21, 465
AlwNI CAGNNNCTG 1 cut(s) 581
Ama87I CYCGRG 1 cut(s) 660
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 3 cut(s) 117, 565, 585
Asp700I GAANNNNTTC 1 cut(s) 274
AspLEI GCGC 2 cut(s) 159, 620
AsuHPI GGTGA 1 cut(s) 788
AvaI CYCGRG 1 cut(s) 660
BanI GGYRCC 1 cut(s) 802
BarI GAAGNNNNNNTAC 2 cut(s) 468, 500
BbvI GCAGC 1 cut(s) 362
BccI CCATC 4 cut(s) 218, 284, 317, 326
BciT130I CCWGG 3 cut(s) 429, 471, 643
BcoDI GTCTC 1 cut(s) 786
BfaI CTAG 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 621
BglII AGATCT 2 cut(s) 238, 451
BisI GCNGC 2 cut(s) 155, 351
BlsI GCNGC 2 cut(s) 156, 352
Bme1390I CCNGG 3 cut(s) 429, 471, 643
BmeT110I CYCGRG 1 cut(s) 660
BmiI GGNNCC 2 cut(s) 277, 804
BmrFI CCNGG 3 cut(s) 429, 471, 643
BmsI GCATC 2 cut(s) 168, 769
BsaBI GATNNNNATC 1 cut(s) 456
BsaI GGTCTC 1 cut(s) 786
BsaJI CCNNGG 1 cut(s) 642
Bse1I ACTGG 1 cut(s) 613
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 3 cut(s) 429, 471, 643
BseDI CCNNGG 1 cut(s) 642
BseGI GGATG 3 cut(s) 112, 337, 742
BseJI GATNNNNATC 1 cut(s) 456
BseMII CTCAG 1 cut(s) 641
BseNI ACTGG 1 cut(s) 613
BseXI GCAGC 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 802
BsiHKCI CYCGRG 1 cut(s) 660
BslFI GGGAC 1 cut(s) 709
BsmAI GTCTC 1 cut(s) 786
BsmFI GGGAC 1 cut(s) 709
Bso31I GGTCTC 1 cut(s) 786
BsoBI CYCGRG 1 cut(s) 660
Bsp143I GATC 4 cut(s) 26, 238, 451, 457
BspACI CCGC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 640
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 277, 804
BspPI GGATC 2 cut(s) 21, 465
BspT107I GGYRCC 1 cut(s) 802
BspTNI GGTCTC 1 cut(s) 786
BsrBI CCGCTC 1 cut(s) 154
BsrI ACTGG 1 cut(s) 613
BssECI CCNNGG 1 cut(s) 642
BssMI GATC 4 cut(s) 26, 238, 451, 457
Bst2UI CCWGG 3 cut(s) 429, 471, 643
Bst4CI ACNGT 1 cut(s) 41
BstDEI CTNAG 4 cut(s) 295, 465, 527, 627
BstF5I GGATG 3 cut(s) 112, 337, 742
BstH2I RGCGCY 1 cut(s) 621
BstHHI GCGC 2 cut(s) 159, 620
BstKTI GATC 4 cut(s) 29, 241, 454, 460
BstMAI GTCTC 1 cut(s) 786
BstMBI GATC 4 cut(s) 26, 238, 451, 457
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 3 cut(s) 429, 471, 643
BstNSI RCATGY 2 cut(s) 65, 233
BstSCI CCNGG 3 cut(s) 427, 469, 641
BstV1I GCAGC 1 cut(s) 362
BstX2I RGATCY 3 cut(s) 238, 451, 457
BstYI RGATCY 3 cut(s) 238, 451, 457
BtsCI GGATG 3 cut(s) 112, 337, 742
BtsIMutI CAGTG 1 cut(s) 172
CaiI CAGNNNCTG 1 cut(s) 581
CciI TCATGA 1 cut(s) 220
CfoI GCGC 2 cut(s) 159, 620
Csp6I GTAC 2 cut(s) 284, 751
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 5 cut(s) 62, 85, 221, 230, 281
CviQI GTAC 2 cut(s) 284, 751
DdeI CTNAG 4 cut(s) 295, 465, 527, 627
DpnI GATC 4 cut(s) 28, 240, 453, 459
DpnII GATC 4 cut(s) 26, 238, 451, 457
DraI TTTAAA 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 786
Eco57I CTGAAG 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 660
EcoRI GAATTC 1 cut(s) 585
EcoRII CCWGG 3 cut(s) 427, 469, 641
FaeI CATG 5 cut(s) 65, 88, 224, 233, 284
FaqI GGGAC 1 cut(s) 709
FatI CATG 5 cut(s) 61, 84, 220, 229, 280
FauNDI CATATG 1 cut(s) 771
FblI GTMKAC 2 cut(s) 77, 384
Fnu4HI GCNGC 2 cut(s) 155, 351
FokI GGATG 3 cut(s) 119, 344, 749
Fsp4HI GCNGC 2 cut(s) 155, 351
FspBI CTAG 1 cut(s) 200
GlaI GCGC 2 cut(s) 158, 619
GluI GCNGC 2 cut(s) 155, 351
HaeII RGCGCY 1 cut(s) 621
HhaI GCGC 2 cut(s) 159, 620
Hin1II CATG 5 cut(s) 65, 88, 224, 233, 284
Hin6I GCGC 2 cut(s) 157, 618
HinP1I GCGC 2 cut(s) 157, 618
HinfI GANTC 3 cut(s) 134, 555, 730
HphI GGTGA 1 cut(s) 788
Hpy166II GTNNAC 3 cut(s) 78, 385, 482
Hpy188I TCNGA 5 cut(s) 142, 238, 322, 407, 630
Hpy188III TCNNGA 5 cut(s) 221, 455, 544, 685, 734
Hpy8I GTNNAC 3 cut(s) 78, 385, 482
HpyAV CCTTC 3 cut(s) 40, 208, 628
HpyCH4III ACNGT 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 4 cut(s) 295, 465, 527, 627
Hsp92II CATG 5 cut(s) 65, 88, 224, 233, 284
HspAI GCGC 2 cut(s) 157, 618
Kzo9I GATC 4 cut(s) 26, 238, 451, 457
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 2 cut(s) 168, 769
MaeI CTAG 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 182, 508
MalI GATC 4 cut(s) 28, 240, 453, 459
MbiI CCGCTC 1 cut(s) 154
MboI GATC 4 cut(s) 26, 238, 451, 457
MboII GAAGA 4 cut(s) 129, 154, 389, 752
MflI RGATCY 3 cut(s) 238, 451, 457
MluCI AATT 8 cut(s) 6, 117, 124, 258, 338, 565, 585, 612
MlyI GAGTC 1 cut(s) 739
MnlI CCTC 6 cut(s) 92, 242, 367, 571, 624, 807
MroXI GAANNNNTTC 1 cut(s) 274
MseI TTAA 4 cut(s) 308, 423, 572, 674
MslI CAYNNNNRTG 2 cut(s) 689, 774
MspR9I CCNGG 3 cut(s) 429, 471, 643
MssI GTTTAAAC 1 cut(s) 309
MvaI CCWGG 3 cut(s) 429, 471, 643
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeI CATATG 1 cut(s) 771
NdeII GATC 4 cut(s) 26, 238, 451, 457
NlaIII CATG 5 cut(s) 65, 88, 224, 233, 284
NlaIV GGNNCC 2 cut(s) 277, 804
NspI RCATGY 2 cut(s) 65, 233
PaeR7I CTCGAG 1 cut(s) 660
PagI TCATGA 1 cut(s) 220
PciI ACATGT 2 cut(s) 61, 229
PdmI GAANNNNTTC 1 cut(s) 274
PfeI GAWTC 2 cut(s) 134, 555
PkrI GCNGC 2 cut(s) 156, 352
PleI GAGTC 1 cut(s) 738
PmeI GTTTAAAC 1 cut(s) 309
PpsI GAGTC 1 cut(s) 738
PscI ACATGT 2 cut(s) 61, 229
Psp6I CCWGG 3 cut(s) 427, 469, 641
PspGI CCWGG 3 cut(s) 427, 469, 641
PspN4I GGNNCC 2 cut(s) 277, 804
PspXI VCTCGAGB 1 cut(s) 660
PsrI GAACNNNNNNTAC 2 cut(s) 61, 93
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 3 cut(s) 238, 451, 457
RsaI GTAC 2 cut(s) 285, 752
RsaNI GTAC 2 cut(s) 284, 751
RseI CAYNNNNRTG 2 cut(s) 689, 774
SaqAI TTAA 4 cut(s) 308, 423, 572, 674
SatI GCNGC 2 cut(s) 155, 351
Sau3AI GATC 4 cut(s) 26, 238, 451, 457
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 3 cut(s) 429, 471, 643
SetI ASST 9 cut(s) 97, 201, 359, 497, 538, 628, 639, 661, 667
SfaNI GCATC 2 cut(s) 168, 769
Sfr274I CTCGAG 1 cut(s) 660
SlaI CTCGAG 1 cut(s) 660
SmiMI CAYNNNNRTG 2 cut(s) 689, 774
SmlI CTYRAG 1 cut(s) 660
SmoI CTYRAG 1 cut(s) 660
Sse9I AATT 8 cut(s) 6, 117, 124, 258, 338, 565, 585, 612
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 3 cut(s) 427, 469, 641
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 150, 661
TasI AATT 8 cut(s) 6, 117, 124, 258, 338, 565, 585, 612
TatI WGTACW 1 cut(s) 283
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 134, 555
Tru1I TTAA 4 cut(s) 308, 423, 572, 674
Tru9I TTAA 4 cut(s) 308, 423, 572, 674
TscAI CASTG 1 cut(s) 172
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 5 cut(s) 17, 41, 456, 753, 801
TspRI CASTG 1 cut(s) 172
XapI RAATTY 3 cut(s) 117, 565, 585
XceI RCATGY 2 cut(s) 65, 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 660
XmiI GTMKAC 2 cut(s) 77, 384
XmnI GAANNNNTTC 1 cut(s) 274
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.