Rmu_sc0000738.1_g000001

Belongs to the bacterial ribosomal protein bS18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000738.1
OG0013090
Physical Location & Seq
Forward (+)
1 .. 3381
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000738.1_g000001.1.cds

Sequence Viewer

Length: 878 bp
aatacaataccctctcttggatctctgcctctgtaactcttccgtgctcttcagtctctccagaaatgaaagtttttcgatttgccctgcgatctctcaatgatggtgtatcacgccggttttatcagccgcacagtgtgagaactctttccacatatgtacccccaggtggtagaatggatgataagcagaactctaattcctttgaatctgctgatgtttttgagccgaggattttcagtgaaacttctgaaggaaattccaaaacagataccttttttgctaatcttgagaggctcagaaagacgactcgtgatggatatgcttcaaatccgcctggaggaaatggaagtggttcccatgtacttgatggcttagatgaaagttttaacacattgtcagatggaatggatggaaaattaaagagagcagccacggacattcaatatgatatcgaggaagttgatacagatggttataccttcagaccagatatgagatatcaactgggagggacttatgatgttaaagatcttgatcttactaggcctggagttcataaacctcccagaaagattgattttgaagtaactacaaaggaggttcttcaaaaagctgatttcaggaatgtgagattccttgcaaatttcataactgaggctggagttattatcaaaagaagcaagactaagattagtgccaaggcccagagaaaggttgcgagagaaattaagacagctcgagctttcggtttaatgcctttcacaacgatggggacaaaatcatttgtttttggaaagactatggaaaatcttggtgaagacttcgaatacgaaagttatgataaccccacagctgatgacggtctgggattctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S18

Protein Analysis

291

Amino Acids

32.62

Weight (kDa)

6.42

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07210
fragaria_vesca FvH4_3g38720
malus_domestica MD03G1068600.v1.1 MD03G1068700.v1.1 MD11G1073200.v1.1
prunus_persica Prupe.6G056500_v2.0.a1 Prupe.6G056500_v2.0.a1
pyrus_communis pycom11g06070
rosa_chinensis RchiOBHm_Chr5g0069871
rosa_laevigata RLG00000036104
rosa_multiflora Rmu_sc0000738.1_g000001
rosa_roxburghii Rroxscaffold_1G00011180
rosa_rugosa Rorug05G0400400
rosa_samantha Rh5AG457500 Rh5BG476300 Rh5CG500100 Rh5DG488100
rosa_wichuraiana Rw5G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 130, 334
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 2 cut(s) 258, 645
AcuI CTGAAG 3 cut(s) 35, 272, 468
AdeI CACNNNGTG 1 cut(s) 138
AfaI GTAC 2 cut(s) 161, 365
AfiI CCNNNNNNNGG 4 cut(s) 17, 169, 340, 714
AgsI TTSAA 5 cut(s) 208, 329, 445, 586, 610
AjnI CCWGG 3 cut(s) 165, 336, 549
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
AluBI AGCT 4 cut(s) 616, 739, 745, 856
AluI AGCT 4 cut(s) 616, 739, 745, 856
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 740
AoxI GGCC 2 cut(s) 547, 704
ApeKI GCWGC 1 cut(s) 430
ApoI RAATTY 2 cut(s) 258, 645
Asp700I GAANNNNTTC 2 cut(s) 147, 354
AspS9I GGNCC 1 cut(s) 705
AsuHPI GGTGA 1 cut(s) 829
AsuII TTCGAA 1 cut(s) 827
AvaI CYCGRG 1 cut(s) 740
BaeI ACNNNNGTAYC 2 cut(s) 143, 176
BauI CACGAG 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 827
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 442
BccI CCATC 7 cut(s) 97, 310, 364, 397, 406, 466, 765
BciT130I CCWGG 3 cut(s) 167, 338, 551
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 1 cut(s) 545
BglII AGATCT 1 cut(s) 531
BisI GCNGC 2 cut(s) 130, 431
BlsI GCNGC 2 cut(s) 131, 432
Bme1390I CCNGG 3 cut(s) 167, 338, 551
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 1 cut(s) 705
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 3 cut(s) 167, 338, 551
BmrI ACTGGG 1 cut(s) 517
BmuI ACTGGG 1 cut(s) 517
BpiI GAAGAC 1 cut(s) 827
BpmI CTGGAG 4 cut(s) 44, 359, 572, 683
Bpu14I TTCGAA 1 cut(s) 827
BpuEI CTTGAG 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 536
BsaJI CCNNGG 4 cut(s) 165, 229, 434, 701
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 169, 340, 714
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 512
Bse8I GATNNNNATC 1 cut(s) 536
BseBI CCWGG 3 cut(s) 167, 338, 551
BseDI CCNNGG 4 cut(s) 165, 229, 434, 701
BseGI GGATG 2 cut(s) 186, 417
BseJI GATNNNNATC 1 cut(s) 536
BseLI CCNNNNNNNGG 4 cut(s) 17, 169, 340, 714
BseMII CTCAG 2 cut(s) 312, 647
BseNI ACTGG 1 cut(s) 512
BseXI GCAGC 1 cut(s) 442
BshFI GGCC 2 cut(s) 549, 706
BsiHKAI GWGCWC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 2 cut(s) 528, 789
BslI CCNNNNNNNGG 4 cut(s) 17, 169, 340, 714
BsmAI GTCTC 1 cut(s) 60
BsmFI GGGAC 2 cut(s) 528, 789
BsnI GGCC 2 cut(s) 549, 706
BsoBI CYCGRG 1 cut(s) 740
Bsp119I TTCGAA 1 cut(s) 827
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 4 cut(s) 20, 91, 531, 537
BspACI CCGC 2 cut(s) 130, 334
BspANI GGCC 2 cut(s) 549, 706
BspCNI CTCAG 2 cut(s) 311, 648
BspLI GGNNCC 1 cut(s) 357
BspPI GGATC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 54
BspT104I TTCGAA 1 cut(s) 827
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 1 cut(s) 512
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 4 cut(s) 165, 229, 434, 701
BssMI GATC 4 cut(s) 20, 91, 531, 537
BssSI CACGAG 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 701
Bst2BI CACGAG 1 cut(s) 311
Bst2UI CCWGG 3 cut(s) 167, 338, 551
Bst4CI ACNGT 2 cut(s) 136, 865
Bst6I CTCTTC 2 cut(s) 44, 54
BstBI TTCGAA 1 cut(s) 827
BstDEI CTNAG 4 cut(s) 298, 375, 656, 689
BstDSI CCRYGG 1 cut(s) 434
BstF5I GGATG 2 cut(s) 186, 417
BstKTI GATC 4 cut(s) 23, 94, 534, 540
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 4 cut(s) 20, 91, 531, 537
BstNI CCWGG 3 cut(s) 167, 338, 551
BstSCI CCNGG 3 cut(s) 165, 336, 549
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 1 cut(s) 827
BstX2I RGATCY 2 cut(s) 20, 531
BstYI RGATCY 2 cut(s) 20, 531
BsuRI GGCC 2 cut(s) 549, 706
BtgI CCRYGG 1 cut(s) 434
BtsCI GGATG 2 cut(s) 186, 417
BtsIMutI CAGTG 2 cut(s) 141, 246
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 705
Csp6I GTAC 2 cut(s) 160, 364
CviAII CATG 1 cut(s) 361
CviQI GTAC 2 cut(s) 160, 364
DdeI CTNAG 4 cut(s) 298, 375, 656, 689
DpnI GATC 4 cut(s) 22, 93, 533, 539
DpnII GATC 4 cut(s) 20, 91, 531, 537
DraIII CACNNNGTG 1 cut(s) 138
Eam1104I CTCTTC 2 cut(s) 44, 54
EarI CTCTTC 2 cut(s) 44, 54
EciI GGCGGA 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 701
Eco147I AGGCCT 1 cut(s) 549
Eco32I GATATC 2 cut(s) 453, 502
Eco57I CTGAAG 3 cut(s) 35, 272, 468
Eco88I CYCGRG 1 cut(s) 740
EcoRII CCWGG 3 cut(s) 165, 336, 549
EcoRV GATATC 2 cut(s) 453, 502
EcoT14I CCWWGG 1 cut(s) 701
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 1 cut(s) 364
FaqI GGGAC 2 cut(s) 528, 789
FatI CATG 1 cut(s) 360
FauNDI CATATG 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 130, 431
FokI GGATG 2 cut(s) 193, 424
Fsp4HI GCNGC 2 cut(s) 130, 431
FspBI CTAG 1 cut(s) 545
GluI GCNGC 2 cut(s) 130, 431
GsuI CTGGAG 4 cut(s) 44, 359, 572, 683
HaeIII GGCC 2 cut(s) 549, 706
HapII CCGG 1 cut(s) 117
Hin1II CATG 1 cut(s) 364
HinfI GANTC 4 cut(s) 208, 309, 635, 872
HpaII CCGG 1 cut(s) 117
HphI GGTGA 1 cut(s) 829
Hpy188I TCNGA 4 cut(s) 252, 301, 402, 487
Hpy188III TCNNGA 5 cut(s) 61, 289, 313, 535, 624
HpyAV CCTTC 2 cut(s) 247, 492
HpyCH4III ACNGT 2 cut(s) 136, 865
HpyCH4V TGCA 1 cut(s) 643
HpyF3I CTNAG 4 cut(s) 298, 375, 656, 689
Hsp92II CATG 1 cut(s) 364
Kzo9I GATC 4 cut(s) 20, 91, 531, 537
LguI GCTCTTC 1 cut(s) 54
Lsp1109I GCAGC 1 cut(s) 442
MaeI CTAG 1 cut(s) 545
MaeIII GTNAC 2 cut(s) 33, 588
MalI GATC 4 cut(s) 22, 93, 533, 539
MboI GATC 4 cut(s) 20, 91, 531, 537
MboII GAAGA 4 cut(s) 31, 41, 598, 832
MflI RGATCY 2 cut(s) 20, 531
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 5 cut(s) 198, 258, 418, 645, 728
MlyI GAGTC 1 cut(s) 303
MroXI GAANNNNTTC 2 cut(s) 147, 354
MseI TTAA 5 cut(s) 389, 421, 527, 731, 754
MslI CAYNNNNRTG 1 cut(s) 769
MspA1I CMGCKG 1 cut(s) 856
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 3 cut(s) 167, 338, 551
MvaI CCWGG 3 cut(s) 167, 338, 551
NdeI CATATG 1 cut(s) 156
NdeII GATC 4 cut(s) 20, 91, 531, 537
NlaIII CATG 1 cut(s) 364
NlaIV GGNNCC 1 cut(s) 357
NmeAIII GCCGAG 1 cut(s) 254
NspV TTCGAA 1 cut(s) 827
PaeR7I CTCGAG 1 cut(s) 740
PceI AGGCCT 1 cut(s) 549
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 147, 354
PfeI GAWTC 3 cut(s) 208, 635, 872
PkrI GCNGC 2 cut(s) 131, 432
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
Psp6I CCWGG 3 cut(s) 165, 336, 549
PspGI CCWGG 3 cut(s) 165, 336, 549
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 705
PspXI VCTCGAGB 1 cut(s) 740
PsuI RGATCY 2 cut(s) 20, 531
PvuII CAGCTG 1 cut(s) 856
RsaI GTAC 2 cut(s) 161, 365
RsaNI GTAC 2 cut(s) 160, 364
RseI CAYNNNNRTG 1 cut(s) 769
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 5 cut(s) 389, 421, 527, 731, 754
SatI GCNGC 2 cut(s) 130, 431
Sau3AI GATC 4 cut(s) 20, 91, 531, 537
Sau96I GGNCC 1 cut(s) 705
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 3 cut(s) 167, 338, 551
SduI GDGCHC 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 740
SfuI TTCGAA 1 cut(s) 827
SlaI CTCGAG 1 cut(s) 740
SmiMI CAYNNNNRTG 1 cut(s) 769
SmlI CTYRAG 2 cut(s) 289, 740
SmoI CTYRAG 2 cut(s) 289, 740
Sse9I AATT 5 cut(s) 198, 258, 418, 645, 728
SseBI AGGCCT 1 cut(s) 549
SsiI CCGC 2 cut(s) 130, 334
SspMI CTAG 1 cut(s) 545
StuI AGGCCT 1 cut(s) 549
StyD4I CCNGG 3 cut(s) 165, 336, 549
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 2 cut(s) 136, 865
TaqI TCGA 4 cut(s) 78, 455, 741, 827
TasI AATT 5 cut(s) 198, 258, 418, 645, 728
TatI WGTACW 1 cut(s) 363
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 3 cut(s) 208, 635, 872
Tru1I TTAA 5 cut(s) 389, 421, 527, 731, 754
Tru9I TTAA 5 cut(s) 389, 421, 527, 731, 754
TscAI CASTG 2 cut(s) 141, 246
TseI GCWGC 1 cut(s) 430
TspDTI ATGAA 4 cut(s) 82, 395, 547, 639
TspGWI ACGGA 2 cut(s) 32, 451
TspRI CASTG 2 cut(s) 141, 246
XapI RAATTY 2 cut(s) 258, 645
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 740
XmnI GAANNNNTTC 2 cut(s) 147, 354
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.