Rh5CG500100

Belongs to the bacterial ribosomal protein bS18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013090
Physical Location & Seq
Reverse (-)
69506793 .. 69510724
3932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG500100.1

Sequence Viewer

Length: 702 bp
ATGGATGATAAGCAGAACTCTAATTCCTTTGAATCTGCTGATGTTTTTGGGGCGAGCATTTTCAGTGAAACTTCTGAAGGAAATTCCAAAACAGATACCTTTTTTGCTAATCTTGAGAGGCTCAGAAAGACGACTCGTGATGGATATGCTTCAAATCCGCCTGGAGGAAATGGAAGTGGTTCCCATGTACTCGATGGCTTAGATGAAAGTTTTAACACATTGTCAGATGGAATGGATGGAAAATTAAAGAGAGCTGCCACGGACATTCAATATGATGTCGAGGAAGTTGATACAGATGGTTATACCTTCAGACCAGATATGAGATATCAACTGGGAGGGACTTATGATGTTAAAGATCTTGATCTTACTAGGCCTGGAGTTCATAAACCTCCCAGAAAGATTGATTTTGAAGTAACTACAAAGGAGGTTCTTCAAAAAGCTGATTTCAGGAATGTGAGATTCCTTGCAAATTTCATAACTGAGGCTGGAGTTATTATCAAAAGAAGCAAGACTAAGATTAGTGCCAAGGCCCAGAGAAAGGTTGCGAGAGAAATTAAGACAGCTCGAGCTTTCGGTTTAATGCCTTTCACAACGATGGGGACAAAATCATTTGTTTTTGGAAAGACTATGGAAAATCTTGGTGAAGACTTCGAATACGAAAGTTATGATAACCCCACAGCTGATGACGGTCTGGGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S18

Protein Analysis

233

Amino Acids

25.93

Weight (kDa)

5.14

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S18 PF01084 146 - 194 9.9e-16 Ribosomal protein S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07210
fragaria_vesca FvH4_3g38720
malus_domestica MD03G1068600.v1.1 MD03G1068700.v1.1 MD11G1073200.v1.1
prunus_persica Prupe.6G056500_v2.0.a1 Prupe.6G056500_v2.0.a1
pyrus_communis pycom11g06070
rosa_chinensis RchiOBHm_Chr5g0069871
rosa_laevigata RLG00000036104
rosa_multiflora Rmu_sc0000738.1_g000001
rosa_roxburghii Rroxscaffold_1G00011180
rosa_rugosa Rorug05G0400400
rosa_samantha Rh5AG457500 Rh5BG476300 Rh5CG500100 Rh5DG488100
rosa_wichuraiana Rw5G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AcsI RAATTY 2 cut(s) 82, 469
AcuI CTGAAG 2 cut(s) 96, 292
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 164, 538
AgsI TTSAA 5 cut(s) 32, 153, 269, 410, 434
AjnI CCWGG 2 cut(s) 160, 373
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 5 cut(s) 254, 440, 563, 569, 680
AluI AGCT 5 cut(s) 254, 440, 563, 569, 680
Ama87I CYCGRG 1 cut(s) 564
AoxI GGCC 2 cut(s) 371, 528
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 2 cut(s) 82, 469
Asp700I GAANNNNTTC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 529
AsuHPI GGTGA 1 cut(s) 653
AsuII TTCGAA 1 cut(s) 651
AvaI CYCGRG 1 cut(s) 564
BauI CACGAG 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 651
BbvI GCAGC 1 cut(s) 241
BccI CCATC 6 cut(s) 134, 188, 221, 230, 290, 589
BciT130I CCWGG 2 cut(s) 162, 375
BfaI CTAG 1 cut(s) 369
BglII AGATCT 1 cut(s) 355
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 162, 375
BmeT110I CYCGRG 1 cut(s) 564
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 162, 375
BmrI ACTGGG 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 3 cut(s) 183, 396, 507
Bpu14I TTCGAA 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 258, 525
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 538
Bse1I ACTGG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 360
BseBI CCWGG 2 cut(s) 162, 375
BseDI CCNNGG 2 cut(s) 258, 525
BseGI GGATG 2 cut(s) 10, 241
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 164, 538
BseMII CTCAG 2 cut(s) 136, 471
BseNI ACTGG 1 cut(s) 336
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 2 cut(s) 373, 530
BsiHKCI CYCGRG 1 cut(s) 564
BslFI GGGAC 2 cut(s) 352, 613
BslI CCNNNNNNNGG 2 cut(s) 164, 538
BsmFI GGGAC 2 cut(s) 352, 613
BsnI GGCC 2 cut(s) 373, 530
BsoBI CYCGRG 1 cut(s) 564
Bsp119I TTCGAA 1 cut(s) 651
Bsp143I GATC 2 cut(s) 355, 361
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 373, 530
BspCNI CTCAG 2 cut(s) 135, 472
BspLI GGNNCC 1 cut(s) 181
BspT104I TTCGAA 1 cut(s) 651
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 258, 525
BssMI GATC 2 cut(s) 355, 361
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 2 cut(s) 162, 375
Bst4CI ACNGT 1 cut(s) 689
BstBI TTCGAA 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 4 cut(s) 122, 199, 480, 513
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 10, 241
BstKTI GATC 2 cut(s) 358, 364
BstMBI GATC 2 cut(s) 355, 361
BstNI CCWGG 2 cut(s) 162, 375
BstSCI CCNGG 2 cut(s) 160, 373
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 2 cut(s) 373, 530
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 10, 241
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 529
Csp6I GTAC 1 cut(s) 188
CviAII CATG 1 cut(s) 185
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 4 cut(s) 122, 199, 480, 513
DpnI GATC 2 cut(s) 357, 363
DpnII GATC 2 cut(s) 355, 361
EciI GGCGGA 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 525
Eco147I AGGCCT 1 cut(s) 373
Eco32I GATATC 1 cut(s) 326
Eco57I CTGAAG 2 cut(s) 96, 292
Eco88I CYCGRG 1 cut(s) 564
EcoRII CCWGG 2 cut(s) 160, 373
EcoRV GATATC 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 1 cut(s) 188
FaqI GGGAC 2 cut(s) 352, 613
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 2 cut(s) 17, 248
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 369
GluI GCNGC 1 cut(s) 255
GsuI CTGGAG 3 cut(s) 183, 396, 507
HaeIII GGCC 2 cut(s) 373, 530
Hin1II CATG 1 cut(s) 188
HinfI GANTC 4 cut(s) 32, 133, 459, 696
HphI GGTGA 1 cut(s) 653
Hpy188I TCNGA 4 cut(s) 76, 125, 226, 311
Hpy188III TCNNGA 4 cut(s) 113, 137, 359, 448
HpyAV CCTTC 2 cut(s) 71, 316
HpyCH4III ACNGT 1 cut(s) 689
HpyCH4V TGCA 1 cut(s) 467
HpyF3I CTNAG 4 cut(s) 122, 199, 480, 513
Hsp92II CATG 1 cut(s) 188
Kzo9I GATC 2 cut(s) 355, 361
Lsp1109I GCAGC 1 cut(s) 241
MaeI CTAG 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 412
MalI GATC 2 cut(s) 357, 363
MboI GATC 2 cut(s) 355, 361
MboII GAAGA 2 cut(s) 422, 656
MflI RGATCY 1 cut(s) 355
MluCI AATT 5 cut(s) 22, 82, 242, 469, 552
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 7 cut(s) 111, 158, 274, 329, 399, 418, 475
MroXI GAANNNNTTC 1 cut(s) 178
MseI TTAA 5 cut(s) 213, 245, 351, 555, 578
MslI CAYNNNNRTG 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 680
MspR9I CCNGG 2 cut(s) 162, 375
MvaI CCWGG 2 cut(s) 162, 375
NdeII GATC 2 cut(s) 355, 361
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 181
NspV TTCGAA 1 cut(s) 651
PaeR7I CTCGAG 1 cut(s) 564
PceI AGGCCT 1 cut(s) 373
PdmI GAANNNNTTC 1 cut(s) 178
PfeI GAWTC 3 cut(s) 32, 459, 696
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 160, 373
PspGI CCWGG 2 cut(s) 160, 373
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 529
PspXI VCTCGAGB 1 cut(s) 564
PsuI RGATCY 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 593
SaqAI TTAA 5 cut(s) 213, 245, 351, 555, 578
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 355, 361
Sau96I GGNCC 1 cut(s) 529
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 2 cut(s) 162, 375
Sfr274I CTCGAG 1 cut(s) 564
SfuI TTCGAA 1 cut(s) 651
SlaI CTCGAG 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 2 cut(s) 113, 564
SmoI CTYRAG 2 cut(s) 113, 564
Sse9I AATT 5 cut(s) 22, 82, 242, 469, 552
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 369
StuI AGGCCT 1 cut(s) 373
StyD4I CCNGG 2 cut(s) 160, 373
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 1 cut(s) 689
TaqI TCGA 4 cut(s) 192, 279, 565, 651
TasI AATT 5 cut(s) 22, 82, 242, 469, 552
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 3 cut(s) 32, 459, 696
Tru1I TTAA 5 cut(s) 213, 245, 351, 555, 578
Tru9I TTAA 5 cut(s) 213, 245, 351, 555, 578
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 3 cut(s) 219, 371, 463
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 70
XapI RAATTY 2 cut(s) 82, 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 178
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.