Prupe.6G056500_v2.0.a1

Belongs to the bacterial ribosomal protein bS18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013090
Physical Location & Seq
Forward (+)
3974325 .. 3977695
3371 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G056500.2

Sequence Viewer

Length: 825 bp
ATGAAAGGTGTTCGATTTGCTTTGCGATCCTTCAACGATGGCGTTTCACGCCGATTTCATCAGCCACATATGAGAACCCTCTCCACGAATGTAACATCAGGCGGTGAAGTGGATGATGAGAACAATTCTAATTCATTTGAATCTCCGGATGAGTTTGAGCGGCGTATTTTCGGTGAAACTTCTGGGGGTAATTTTAGATCAGATGCCTTTTTCACGAAGCTTGATAGGCTCGGGATGGGTCATGATGGACAGGGTTTGAATCGTTCTGGAGGAGGTGGAAGTGGAAGTGGTTCTCATATACTCGACGGCTTAGATGAAAGTTTTAACACATTATCAGATGGAATGGATGGAAAATTAGAGAAAGCAGCCGCCGACTTTGATATTGATTACGAGGAAATAAACCAAGAGGACTATTCTTACAGACCAGATGTGAATTTTGAGCTAGGAATGACTTATGACCTTAAAGATCTTGATCTTACTAAGCGAGGAGTGCGTAAGTTTACCCCAAGGGATGAGTTTGAAGTAACTACAAAGGAAGTTCTTAGAAAAGCTGATTTCAGGAATGTGAGATTCCTGGCAAATTTCTTAACAGATGCTGGAATTCTCATCAAAAGAAGCAAGACTGGGATCAGCGCCAAGGCCCAGAGGAAGGTCGCTAGGGAAATCAAAACAGCTCGAGCTTTTGGTTTAATGCCTTTCACGACAATGGGGACAAAGTCATTTGTTTTTGGGAAAACTATGGAGGCTCTCGATCAAGATTACGAATACGAAAGTTATGATAACCCTATGGATGCTGATGGAAAAGACCCACTGGGGCCCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S18

Protein Analysis

275

Amino Acids

30.7

Weight (kDa)

5.13

Isoelectric Point (pI)

31.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07210
fragaria_vesca FvH4_3g38720
malus_domestica MD03G1068600.v1.1 MD03G1068700.v1.1 MD11G1073200.v1.1
prunus_persica Prupe.6G056500_v2.0.a1 Prupe.6G056500_v2.0.a1
pyrus_communis pycom11g06070
rosa_chinensis RchiOBHm_Chr5g0069871
rosa_laevigata RLG00000036104
rosa_multiflora Rmu_sc0000738.1_g000001
rosa_roxburghii Rroxscaffold_1G00011180
rosa_rugosa Rorug05G0400400
rosa_samantha Rh5AG457500 Rh5BG476300 Rh5CG500100 Rh5DG488100
rosa_wichuraiana Rw5G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 160
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 3 cut(s) 102, 160, 369
AclWI GGATC 2 cut(s) 21, 635
AcsI RAATTY 3 cut(s) 433, 580, 600
AfiI CCNNNNNNNGG 1 cut(s) 649
AgsI TTSAA 4 cut(s) 34, 140, 259, 521
AjnI CCWGG 1 cut(s) 573
AluBI AGCT 5 cut(s) 220, 442, 551, 674, 680
AluI AGCT 5 cut(s) 220, 442, 551, 674, 680
AlwI GGATC 2 cut(s) 21, 635
AlwNI CAGNNNCTG 1 cut(s) 596
Ama87I CYCGRG 2 cut(s) 230, 675
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 2 cut(s) 639, 815
ApaI GGGCCC 1 cut(s) 819
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 3 cut(s) 433, 580, 600
Asp700I GAANNNNTTC 1 cut(s) 289
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 3 cut(s) 640, 815, 816
AsuHPI GGTGA 2 cut(s) 116, 185
AvaI CYCGRG 2 cut(s) 230, 675
BaeGI GKGCMC 1 cut(s) 819
BanII GRGCYC 1 cut(s) 819
BbvI GCAGC 1 cut(s) 377
BccI CCATC 6 cut(s) 32, 229, 239, 332, 341, 791
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 575
BfaI CTAG 2 cut(s) 443, 657
BfoI RGCGCY 1 cut(s) 636
BglII AGATCT 1 cut(s) 466
BisI GCNGC 3 cut(s) 161, 366, 369
BlsI GCNGC 3 cut(s) 162, 367, 370
Bme1390I CCNGG 1 cut(s) 575
BmeT110I CYCGRG 2 cut(s) 230, 675
BmgT120I GGNCC 3 cut(s) 640, 815, 816
BmiI GGNNCC 2 cut(s) 816, 817
BmrFI CCNGG 1 cut(s) 575
BmrI ACTGGG 2 cut(s) 633, 821
BmsI GCATC 3 cut(s) 193, 583, 781
BmuI ACTGGG 2 cut(s) 633, 821
BpmI CTGGAG 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 506, 636
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse1I ACTGG 2 cut(s) 628, 816
Bse8I GATNNNNATC 1 cut(s) 471
BseAI TCCGGA 1 cut(s) 145
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 2 cut(s) 506, 636
BseGI GGATG 6 cut(s) 118, 154, 240, 352, 517, 796
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 649
BseNI ACTGG 2 cut(s) 628, 816
BseRI GAGGAG 2 cut(s) 285, 501
BseSI GKGCMC 1 cut(s) 819
BseXI GCAGC 1 cut(s) 377
BshFI GGCC 2 cut(s) 641, 817
BsiHKCI CYCGRG 2 cut(s) 230, 675
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 1 cut(s) 649
BsmFI GGGAC 1 cut(s) 724
BsnI GGCC 2 cut(s) 641, 817
BsoBI CYCGRG 2 cut(s) 230, 675
Bsp120I GGGCCC 1 cut(s) 815
Bsp1286I GDGCHC 1 cut(s) 819
Bsp13I TCCGGA 1 cut(s) 145
Bsp143I GATC 6 cut(s) 26, 197, 466, 472, 627, 751
BspACI CCGC 3 cut(s) 102, 160, 369
BspANI GGCC 2 cut(s) 641, 817
BspEI TCCGGA 1 cut(s) 145
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 816, 817
BspPI GGATC 2 cut(s) 21, 635
BsrBI CCGCTC 1 cut(s) 160
BsrI ACTGG 2 cut(s) 628, 816
BssECI CCNNGG 2 cut(s) 506, 636
BssMI GATC 6 cut(s) 26, 197, 466, 472, 627, 751
BssT1I CCWWGG 2 cut(s) 506, 636
Bst2UI CCWGG 1 cut(s) 575
BstDEI CTNAG 3 cut(s) 310, 480, 542
BstF5I GGATG 6 cut(s) 118, 154, 240, 352, 517, 796
BstH2I RGCGCY 1 cut(s) 636
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 6 cut(s) 29, 200, 469, 475, 630, 754
BstMBI GATC 6 cut(s) 26, 197, 466, 472, 627, 751
BstMWI GCNNNNNNNGC 3 cut(s) 48, 226, 490
BstNI CCWGG 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 819
BstV1I GCAGC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 2 cut(s) 641, 817
BtsCI GGATG 6 cut(s) 118, 154, 240, 352, 517, 796
BtsIMutI CAGTG 1 cut(s) 809
CaiI CAGNNNCTG 1 cut(s) 596
CciI TCATGA 1 cut(s) 241
CfoI GCGC 1 cut(s) 635
Cfr13I GGNCC 3 cut(s) 640, 815, 816
CviAII CATG 1 cut(s) 242
DdeI CTNAG 3 cut(s) 310, 480, 542
DpnI GATC 6 cut(s) 28, 199, 468, 474, 629, 753
DpnII GATC 6 cut(s) 26, 197, 466, 472, 627, 751
Eco130I CCWWGG 2 cut(s) 506, 636
Eco24I GRGCYC 1 cut(s) 819
Eco88I CYCGRG 2 cut(s) 230, 675
EcoO109I RGGNCCY 2 cut(s) 815, 816
EcoRI GAATTC 1 cut(s) 600
EcoRII CCWGG 1 cut(s) 573
EcoT14I CCWWGG 2 cut(s) 506, 636
EcoT38I GRGCYC 1 cut(s) 819
ErhI CCWWGG 2 cut(s) 506, 636
FaeI CATG 1 cut(s) 245
FaiI YATR 9 cut(s) 69, 71, 243, 297, 299, 456, 740, 777, 788
FaqI GGGAC 1 cut(s) 724
FatI CATG 1 cut(s) 241
FauNDI CATATG 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 161, 366, 369
FokI GGATG 6 cut(s) 125, 161, 247, 359, 524, 803
FriOI GRGCYC 1 cut(s) 819
Fsp4HI GCNGC 3 cut(s) 161, 366, 369
FspBI CTAG 2 cut(s) 443, 657
GlaI GCGC 1 cut(s) 634
GluI GCNGC 3 cut(s) 161, 366, 369
GsuI CTGGAG 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 636
HaeIII GGCC 2 cut(s) 641, 817
HapII CCGG 1 cut(s) 146
HhaI GCGC 1 cut(s) 635
Hin1II CATG 1 cut(s) 245
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 3 cut(s) 140, 259, 570
HpaII CCGG 1 cut(s) 146
HphI GGTGA 2 cut(s) 116, 185
Hpy166II GTNNAC 1 cut(s) 501
Hpy188I TCNGA 2 cut(s) 202, 337
Hpy8I GTNNAC 1 cut(s) 501
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 40, 643
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 226, 490
HpyF3I CTNAG 3 cut(s) 310, 480, 542
Hsp92II CATG 1 cut(s) 245
HspAI GCGC 1 cut(s) 633
Kpn2I TCCGGA 1 cut(s) 145
Kzo9I GATC 6 cut(s) 26, 197, 466, 472, 627, 751
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 3 cut(s) 193, 583, 781
MaeI CTAG 2 cut(s) 443, 657
MaeIII GTNAC 2 cut(s) 91, 523
MalI GATC 6 cut(s) 28, 199, 468, 474, 629, 753
MbiI CCGCTC 1 cut(s) 160
MboI GATC 6 cut(s) 26, 197, 466, 472, 627, 751
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 819
MluCI AATT 7 cut(s) 124, 130, 190, 353, 433, 580, 600
MnlI CCTC 8 cut(s) 89, 263, 266, 385, 400, 479, 639, 736
MroI TCCGGA 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 4 cut(s) 324, 462, 587, 689
MslI CAYNNNNRTG 1 cut(s) 704
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 575
MvaI CCWGG 1 cut(s) 575
MwoI GCNNNNNNNGC 3 cut(s) 48, 226, 490
NdeI CATATG 1 cut(s) 69
NdeII GATC 6 cut(s) 26, 197, 466, 472, 627, 751
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 816, 817
PaeR7I CTCGAG 1 cut(s) 675
PagI TCATGA 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 3 cut(s) 140, 259, 570
PflFI GACNNNGTC 1 cut(s) 715
PkrI GCNGC 3 cut(s) 162, 367, 370
Psp6I CCWGG 1 cut(s) 573
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 2 cut(s) 816, 817
PspOMI GGGCCC 1 cut(s) 815
PspPI GGNCC 3 cut(s) 640, 815, 816
PspXI VCTCGAGB 1 cut(s) 675
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 1 cut(s) 466
PsyI GACNNNGTC 1 cut(s) 715
RseI CAYNNNNRTG 1 cut(s) 704
SaqAI TTAA 4 cut(s) 324, 462, 587, 689
SatI GCNGC 3 cut(s) 161, 366, 369
Sau3AI GATC 6 cut(s) 26, 197, 466, 472, 627, 751
Sau96I GGNCC 3 cut(s) 640, 815, 816
ScrFI CCNGG 1 cut(s) 575
SduI GDGCHC 1 cut(s) 819
SetI ASST 9 cut(s) 10, 222, 277, 444, 462, 553, 654, 676, 682
SfaNI GCATC 3 cut(s) 193, 583, 781
Sfr274I CTCGAG 1 cut(s) 675
SlaI CTCGAG 1 cut(s) 675
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
Sse9I AATT 7 cut(s) 124, 130, 190, 353, 433, 580, 600
SsiI CCGC 3 cut(s) 102, 160, 369
SspMI CTAG 2 cut(s) 443, 657
StyD4I CCNGG 1 cut(s) 573
StyI CCWWGG 2 cut(s) 506, 636
TaqI TCGA 4 cut(s) 13, 303, 676, 750
TasI AATT 7 cut(s) 124, 130, 190, 353, 433, 580, 600
TauI GCSGC 2 cut(s) 163, 371
TfiI GAWTC 3 cut(s) 140, 259, 570
Tru1I TTAA 4 cut(s) 324, 462, 587, 689
Tru9I TTAA 4 cut(s) 324, 462, 587, 689
TscAI CASTG 1 cut(s) 816
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 4 cut(s) 17, 47, 123, 330
TspRI CASTG 1 cut(s) 816
Tth111I GACNNNGTC 1 cut(s) 715
XapI RAATTY 3 cut(s) 433, 580, 600
XhoI CTCGAG 1 cut(s) 675
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 2 cut(s) 443, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.