FvH4_3g38720

Belongs to the bacterial ribosomal protein bS18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013090
Physical Location & Seq
Reverse (-)
32994198 .. 32998064
3867 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38720.t1

Sequence Viewer

Length: 813 bp
ATGAAACTTTTTCAATTTGCTCTGCGGTCTCTCCATGATGGTGTATCATGCCGGTTTCATCATGCGCACAGCGTGAGAACTCTTTCCACATATGCACCCCCAGGTGGTAGAATGGATGATAAGCAAAACTCTAATTCCTTTGAATCTGCTGATGATTTTGAGGCGAGGATTTTCAGGGATACTCCCGAAGGGAATCCCAAAAGAGATGCCTTTTTTACTATACTTGATAGGCTTGAGAAGACTAGTGATGGATATGCTTCGAATCAGCCTGGAGAAAATCAAGGTGGTTCCCATGTACTTGACGGCTTGGATGAAAGTTTTAACACATTGTCAGATGGAATGGATAAAAAATTAAAGAGAGCAGCCACATACTTTCAATATGATTTGGAGGAATGTAAAACAGACGGATATATCTTCAGACCTGATGCAAATTATTTTGACGGAGGGACTTATGAGCCTAAAGATCTTGATCTTACTAAGCCTGCATATCGTCAACCTCGCAGAAGGAATGAGTTTGAAGTAACTACAGAGGAAGTTCTTCGAAAAGCCGATTTCAGGAATGTGAGATTCCTTGCAAATTTCATAACTGAGGCTGGAGTCCTTAAAAAAAGAAGCCAGACTAAAATTAGTGCCAAAGCCCAGAGAAAGATTGCGAGAGAAATTAAGACAGCTCGAGCTTTCGGTTTAATGCCTTTCACAACTATGGGGATGAAATCATTTGTATTTGGAAAGACTATGGAAAATCTTGATGCCGACTTTGAGTATGAAAGTTATGATAACCCTACTGCTGATGATGGTCTTGGATACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S18

Protein Analysis

271

Amino Acids

30.85

Weight (kDa)

6.03

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S18 PF01084 182 - 230 3.1e-14 Ribosomal protein S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07210
fragaria_vesca FvH4_3g38720
malus_domestica MD03G1068600.v1.1 MD03G1068700.v1.1 MD11G1073200.v1.1
prunus_persica Prupe.6G056500_v2.0.a1 Prupe.6G056500_v2.0.a1
pyrus_communis pycom11g06070
rosa_chinensis RchiOBHm_Chr5g0069871
rosa_laevigata RLG00000036104
rosa_multiflora Rmu_sc0000738.1_g000001
rosa_roxburghii Rroxscaffold_1G00011180
rosa_rugosa Rorug05G0400400
rosa_samantha Rh5AG457500 Rh5BG476300 Rh5CG500100 Rh5DG488100
rosa_wichuraiana Rw5G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 66
AciI CCGC 1 cut(s) 25
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 400
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 104, 555
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 4 cut(s) 14, 143, 377, 518
AhlI ACTAGT 1 cut(s) 242
AjnI CCWGG 2 cut(s) 100, 268
AluBI AGCT 2 cut(s) 671, 677
AluI AGCT 2 cut(s) 671, 677
Alw26I GTCTC 1 cut(s) 33
Ama87I CYCGRG 1 cut(s) 672
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 577
Asp700I GAANNNNTTC 2 cut(s) 82, 537
AspLEI GCGC 1 cut(s) 67
AsuII TTCGAA 2 cut(s) 260, 541
AvaI CYCGRG 1 cut(s) 672
BbsI GAAGAC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 374
BccI CCATC 4 cut(s) 32, 242, 329, 788
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 2 cut(s) 102, 270
BciVI GTATCC 2 cut(s) 172, 797
BcoDI GTCTC 1 cut(s) 33
BcuI ACTAGT 1 cut(s) 242
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 525
BfuI GTATCC 2 cut(s) 172, 797
BglII AGATCT 1 cut(s) 463
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme1390I CCNGG 2 cut(s) 102, 270
BmeT110I CYCGRG 1 cut(s) 672
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 2 cut(s) 102, 270
BmsI GCATC 3 cut(s) 196, 415, 739
BpiI GAAGAC 1 cut(s) 245
BpmI CTGGAG 2 cut(s) 291, 615
Bpu14I TTCGAA 2 cut(s) 260, 541
BpuEI CTTGAG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 555
Bse118I RCCGGY 1 cut(s) 51
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 2 cut(s) 102, 270
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 3 cut(s) 121, 316, 714
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 104, 555
BseMII CTCAG 1 cut(s) 579
BseXI GCAGC 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 2 cut(s) 104, 555
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 460
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 672
Bsp119I TTCGAA 2 cut(s) 260, 541
Bsp143I GATC 2 cut(s) 463, 469
BspACI CCGC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 580
BspLI GGNNCC 1 cut(s) 289
BspT104I TTCGAA 2 cut(s) 260, 541
BspTNI GGTCTC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 463, 469
Bst2UI CCWGG 2 cut(s) 102, 270
BstBI TTCGAA 2 cut(s) 260, 541
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 2 cut(s) 477, 588
BstF5I GGATG 3 cut(s) 121, 316, 714
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 2 cut(s) 466, 472
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 2 cut(s) 463, 469
BstNI CCWGG 2 cut(s) 102, 270
BstNSI RCATGY 1 cut(s) 811
BstSCI CCNGG 2 cut(s) 100, 268
BstSFI CTRYAG 1 cut(s) 525
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuI GTATCC 2 cut(s) 172, 797
BtsCI GGATG 3 cut(s) 121, 316, 714
Cac8I GCNNGC 1 cut(s) 483
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 51
Csp6I GTAC 1 cut(s) 296
CviAII CATG 5 cut(s) 35, 48, 62, 293, 808
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 2 cut(s) 477, 588
DpnI GATC 2 cut(s) 465, 471
DpnII GATC 2 cut(s) 463, 469
DraIII CACNNNGTG 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 672
EcoRII CCWGG 2 cut(s) 100, 268
FaeI CATG 5 cut(s) 38, 51, 65, 296, 811
FaqI GGGAC 1 cut(s) 460
FatI CATG 5 cut(s) 34, 47, 61, 292, 807
FauNDI CATATG 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 3 cut(s) 128, 323, 721
Fsp4HI GCNGC 1 cut(s) 363
FspAI RTGCGCAY 1 cut(s) 66
FspBI CTAG 1 cut(s) 243
FspI TGCGCA 1 cut(s) 66
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 363
GsuI CTGGAG 2 cut(s) 291, 615
HapII CCGG 1 cut(s) 52
HhaI GCGC 1 cut(s) 67
Hin1II CATG 5 cut(s) 38, 51, 65, 296, 811
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 494
HindII GTYRAC 1 cut(s) 494
HinfI GANTC 5 cut(s) 143, 193, 262, 567, 597
HpaII CCGG 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 2 cut(s) 334, 419
Hpy188III TCNNGA 4 cut(s) 185, 467, 556, 746
Hpy8I GTNNAC 1 cut(s) 494
HpyAV CCTTC 2 cut(s) 182, 498
HpyCH4V TGCA 4 cut(s) 95, 428, 485, 575
HpyF3I CTNAG 2 cut(s) 477, 588
Hsp92II CATG 5 cut(s) 38, 51, 65, 296, 811
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 463, 469
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 3 cut(s) 196, 415, 739
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 520
MalI GATC 2 cut(s) 465, 471
MboI GATC 2 cut(s) 463, 469
MboII GAAGA 3 cut(s) 250, 406, 530
MflI RGATCY 1 cut(s) 463
MluCI AATT 7 cut(s) 14, 133, 350, 430, 577, 624, 660
MlyI GAGTC 1 cut(s) 606
MnlI CCTC 7 cut(s) 154, 159, 382, 437, 507, 523, 583
MroXI GAANNNNTTC 2 cut(s) 82, 537
MseI TTAA 5 cut(s) 321, 353, 603, 663, 686
MslI CAYNNNNRTG 2 cut(s) 39, 701
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 2 cut(s) 102, 270
MvaI CCWGG 2 cut(s) 102, 270
NdeI CATATG 1 cut(s) 91
NdeII GATC 2 cut(s) 463, 469
NlaIII CATG 5 cut(s) 38, 51, 65, 296, 811
NlaIV GGNNCC 1 cut(s) 289
NsbI TGCGCA 1 cut(s) 66
NspI RCATGY 1 cut(s) 811
NspV TTCGAA 2 cut(s) 260, 541
PaeR7I CTCGAG 1 cut(s) 672
PciI ACATGT 1 cut(s) 807
PdmI GAANNNNTTC 2 cut(s) 82, 537
PfeI GAWTC 4 cut(s) 143, 193, 262, 567
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 1 cut(s) 605
PpsI GAGTC 1 cut(s) 605
PscI ACATGT 1 cut(s) 807
Psp6I CCWGG 2 cut(s) 100, 268
PspGI CCWGG 2 cut(s) 100, 268
PspN4I GGNNCC 1 cut(s) 289
PspXI VCTCGAGB 1 cut(s) 672
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
RseI CAYNNNNRTG 2 cut(s) 39, 701
SaqAI TTAA 5 cut(s) 321, 353, 603, 663, 686
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 2 cut(s) 463, 469
SchI GAGTC 1 cut(s) 606
ScrFI CCNGG 2 cut(s) 102, 270
SetI ASST 6 cut(s) 106, 286, 424, 499, 673, 679
SfaNI GCATC 3 cut(s) 196, 415, 739
SfcI CTRYAG 1 cut(s) 525
Sfr274I CTCGAG 1 cut(s) 672
SfuI TTCGAA 2 cut(s) 260, 541
SlaI CTCGAG 1 cut(s) 672
SmiMI CAYNNNNRTG 2 cut(s) 39, 701
SmlI CTYRAG 2 cut(s) 233, 672
SmoI CTYRAG 2 cut(s) 233, 672
SpeI ACTAGT 1 cut(s) 242
Sse9I AATT 7 cut(s) 14, 133, 350, 430, 577, 624, 660
SsiI CCGC 1 cut(s) 25
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 100, 268
TaqI TCGA 3 cut(s) 260, 541, 673
TasI AATT 7 cut(s) 14, 133, 350, 430, 577, 624, 660
TatI WGTACW 1 cut(s) 295
TfiI GAWTC 4 cut(s) 143, 193, 262, 567
Tru1I TTAA 5 cut(s) 321, 353, 603, 663, 686
Tru9I TTAA 5 cut(s) 321, 353, 603, 663, 686
TseI GCWGC 1 cut(s) 362
TspDTI ATGAA 6 cut(s) 17, 47, 327, 571, 725, 780
TspGWI ACGGA 2 cut(s) 420, 456
XapI RAATTY 1 cut(s) 577
XceI RCATGY 1 cut(s) 811
XhoI CTCGAG 1 cut(s) 672
XmnI GAANNNNTTC 2 cut(s) 82, 537
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.