Rh5AG457500

Belongs to the bacterial ribosomal protein bS18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013090
Physical Location & Seq
Reverse (-)
78398873 .. 78402810
3938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG457500.1

Sequence Viewer

Length: 585 bp
ATGAAAGTTTTTCGATTTGCCCTGCGATCTCTCAATGATGGTGTATCACGCCGGTTTTATCAGCCGCACAGTGTGAGAACTCTTTCCACATATGTACCCCCAGGTGGTAGAATGGATGATAAGCAGAACTCTAATTCCTTTGAATCTGCTGATGTTTTTGAGCCGAGGATTTTCAGTGAAACTTCTGAAGGAAATTCCAAAACAGATACCTTTTTTACTAATCTTGAGAGGCTCAGAAAGACGACTCGTGATGGATATGCTTCAAATCCGCCTGCAGGAAATGGAAGTGGTTCCCATGTACTCGATGGCTTAGATGAAAGTTTTAACACATTGTCAGATGGAATGGATGGAAAATTAAAGAGAGCAGCCACGGACATTCAATATGATATCGAGGAAGTTGATACAGATGGTTATACCTTCAGACCAGATATGAGATATCAACTGGGAGGGACTTATGATGTTAAAGATCTTGATCTTACTAGGCCTGGAGTTCATAAACCTCCCAGAAAGATTGATTTTGAAGTAACTACAAAGGAAGTTCTTCAAAAAGCTGATTTCAGGGTATGCATACCTGTCAGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S18

Protein Analysis

194

Amino Acids

21.93

Weight (kDa)

5.67

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07210
fragaria_vesca FvH4_3g38720
malus_domestica MD03G1068600.v1.1 MD03G1068700.v1.1 MD11G1073200.v1.1
prunus_persica Prupe.6G056500_v2.0.a1 Prupe.6G056500_v2.0.a1
pyrus_communis pycom11g06070
rosa_chinensis RchiOBHm_Chr5g0069871
rosa_laevigata RLG00000036104
rosa_multiflora Rmu_sc0000738.1_g000001
rosa_roxburghii Rroxscaffold_1G00011180
rosa_rugosa Rorug05G0400400
rosa_samantha Rh5AG457500 Rh5BG476300 Rh5CG500100 Rh5DG488100
rosa_wichuraiana Rw5G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 65, 269
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 2 cut(s) 207, 403
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 2 cut(s) 96, 300
AfiI CCNNNNNNNGG 2 cut(s) 104, 275
AgsI TTSAA 5 cut(s) 143, 264, 380, 521, 545
AjnI CCWGG 2 cut(s) 100, 484
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 1 cut(s) 551
AluI AGCT 1 cut(s) 551
AlwNI CAGNNNCTG 1 cut(s) 582
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 193
Asp700I GAANNNNTTC 3 cut(s) 82, 289, 540
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
BauI CACGAG 1 cut(s) 246
BbvI GCAGC 1 cut(s) 377
BccI CCATC 6 cut(s) 32, 245, 299, 332, 341, 401
BciT130I CCWGG 2 cut(s) 102, 486
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 273
BglII AGATCT 1 cut(s) 466
BisI GCNGC 2 cut(s) 65, 366
BlsI GCNGC 2 cut(s) 66, 367
Bme1390I CCNGG 2 cut(s) 102, 486
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 2 cut(s) 102, 486
BmrI ACTGGG 1 cut(s) 452
BmuI ACTGGG 1 cut(s) 452
BpmI CTGGAG 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 471
BsaJI CCNNGG 3 cut(s) 100, 164, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 275
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 2 cut(s) 102, 486
BseDI CCNNGG 3 cut(s) 100, 164, 369
BseGI GGATG 2 cut(s) 121, 352
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 2 cut(s) 104, 275
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 447
BseXI GCAGC 1 cut(s) 377
BshFI GGCC 1 cut(s) 484
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 2 cut(s) 104, 275
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 1 cut(s) 484
Bsp143I GATC 3 cut(s) 26, 466, 472
BspACI CCGC 2 cut(s) 65, 269
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 1 cut(s) 447
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 100, 164, 369
BssMI GATC 3 cut(s) 26, 466, 472
BssSI CACGAG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 102, 486
Bst4CI ACNGT 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 233, 310
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 121, 352
BstKTI GATC 3 cut(s) 29, 469, 475
BstMBI GATC 3 cut(s) 26, 466, 472
BstNI CCWGG 2 cut(s) 102, 486
BstSCI CCNGG 2 cut(s) 100, 484
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 1 cut(s) 484
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 2 cut(s) 121, 352
BtsIMutI CAGTG 2 cut(s) 76, 181
Cac8I GCNNGC 1 cut(s) 273
CaiI CAGNNNCTG 1 cut(s) 582
Cfr10I RCCGGY 1 cut(s) 51
Csp6I GTAC 2 cut(s) 95, 299
CviAII CATG 1 cut(s) 296
CviJI RGCY 7 cut(s) 64, 163, 232, 309, 368, 484, 551
CviKI_1 RGCY 7 cut(s) 64, 163, 232, 309, 368, 484, 551
CviQI GTAC 2 cut(s) 95, 299
DdeI CTNAG 2 cut(s) 233, 310
DpnI GATC 3 cut(s) 28, 468, 474
DpnII GATC 3 cut(s) 26, 466, 472
DraIII CACNNNGTG 1 cut(s) 73
EciI GGCGGA 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 484
Eco32I GATATC 2 cut(s) 388, 437
Eco57I CTGAAG 2 cut(s) 207, 403
EcoRII CCWGG 2 cut(s) 100, 484
EcoRV GATATC 2 cut(s) 388, 437
EcoT22I ATGCAT 1 cut(s) 569
FaeI CATG 1 cut(s) 299
FaqI GGGAC 1 cut(s) 463
FatI CATG 1 cut(s) 295
FauNDI CATATG 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 65, 366
FokI GGATG 2 cut(s) 128, 359
Fsp4HI GCNGC 2 cut(s) 65, 366
FspBI CTAG 1 cut(s) 480
GluI GCNGC 2 cut(s) 65, 366
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 1 cut(s) 484
HapII CCGG 1 cut(s) 52
Hin1II CATG 1 cut(s) 299
HinfI GANTC 2 cut(s) 143, 244
HpaII CCGG 1 cut(s) 52
Hpy188I TCNGA 5 cut(s) 187, 236, 337, 422, 584
Hpy188III TCNNGA 3 cut(s) 224, 248, 470
HpyAV CCTTC 2 cut(s) 182, 427
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 275, 567
HpyF3I CTNAG 2 cut(s) 233, 310
Hsp92II CATG 1 cut(s) 299
Kzo9I GATC 3 cut(s) 26, 466, 472
Lsp1109I GCAGC 1 cut(s) 377
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 523
MalI GATC 3 cut(s) 28, 468, 474
MboI GATC 3 cut(s) 26, 466, 472
MboII GAAGA 1 cut(s) 533
MflI RGATCY 1 cut(s) 466
MluCI AATT 3 cut(s) 133, 193, 353
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 5 cut(s) 159, 222, 385, 440, 510
Mph1103I ATGCAT 1 cut(s) 569
MroXI GAANNNNTTC 3 cut(s) 82, 289, 540
MseI TTAA 3 cut(s) 324, 356, 462
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 2 cut(s) 102, 486
MvaI CCWGG 2 cut(s) 102, 486
NdeI CATATG 1 cut(s) 91
NdeII GATC 3 cut(s) 26, 466, 472
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 1 cut(s) 292
NmeAIII GCCGAG 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 569
PceI AGGCCT 1 cut(s) 484
PdmI GAANNNNTTC 3 cut(s) 82, 289, 540
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 66, 367
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 100, 484
PspGI CCWGG 2 cut(s) 100, 484
PspN4I GGNNCC 1 cut(s) 292
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 582
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 2 cut(s) 96, 300
RsaNI GTAC 2 cut(s) 95, 299
SaqAI TTAA 3 cut(s) 324, 356, 462
SatI GCNGC 2 cut(s) 65, 366
Sau3AI GATC 3 cut(s) 26, 466, 472
SbfI CCTGCAGG 1 cut(s) 277
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 2 cut(s) 102, 486
SdaI CCTGCAGG 1 cut(s) 277
SetI ASST 6 cut(s) 106, 212, 419, 502, 553, 574
SfcI CTRYAG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse8387I CCTGCAGG 1 cut(s) 277
Sse9I AATT 3 cut(s) 133, 193, 353
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 2 cut(s) 65, 269
SspMI CTAG 1 cut(s) 480
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 2 cut(s) 100, 484
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 3 cut(s) 13, 303, 390
TasI AATT 3 cut(s) 133, 193, 353
TatI WGTACW 1 cut(s) 298
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 3 cut(s) 324, 356, 462
Tru9I TTAA 3 cut(s) 324, 356, 462
TscAI CASTG 2 cut(s) 76, 181
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 3 cut(s) 17, 330, 482
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 76, 181
XapI RAATTY 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XmnI GAANNNNTTC 3 cut(s) 82, 289, 540
XspI CTAG 1 cut(s) 480
Zsp2I ATGCAT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.